Hmdb loader
Survey
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2019-12-02 16:13:24 UTC
Update Date2022-11-30 19:53:42 UTC
HMDB IDHMDB0240601
Secondary Accession NumbersNone
Metabolite Identification
Common NameLysoPG(16:0/0:0)
DescriptionLysoPG(16:0/0:0) is a lysophosphatidylglycerol. It is a glycerophospholipid in which a phosphoglycerol moiety occupies a glycerol substitution site. The term 'lysophospholipid' (LPL) refers to any phospholipid that is missing one of its two O-acyl chains. Thus, LPLs have a free alcohol in either the sn-1 or sn-2 position. The prefix 'lyso-' comes from the fact that lysophospholipids were originally found to be hemolytic. However, it is now used to refer generally to phospholipids missing an acyl chain. LPLs are usually the result of phospholipase A-type enzymatic activity on regular phospholipids such as phosphatidylcholine or phosphatidic acid, although they can also be generated by the acylation of glycerophospholipids or the phosphorylation of monoacylglycerols. Lysophosphatidylglycerols can have different combinations of fatty acids of varying lengths and saturation attached at the C-1 (sn-1) or C-2 (sn-2) position. LysoPG(16:0/0:0), in particular, consists of one chain of palmitic acid at the C-1 position.
Structure
Data?1575303586
Synonyms
ValueSource
1-Palmitoyl-sn-glycero-3-phospho-(1'-sn-glycerol)ChEBI
LPG(16:0/0:0)ChEBI
PG(16:0/0:0)ChEBI
1-Palmitoyl-GPGHMDB
1-Palmitoyl-lysophosphatidylglycerolHMDB
1-Palmitoyl-sn-glycero-3-phospho-(1’-sn-glycerol)HMDB
1-Palmitoyl-sn-glycero-3-phosphoglycerolHMDB
GPG(16:0)HMDB
GPG(16:0/0:0)HMDB
LPG(16:0)HMDB
LysoPG(16:0)HMDB
Lysophosphatidylglycerol(16:0)HMDB
Lysophosphatidylglycerol(16:0/0:0)HMDB
LysoPG(16:0/0:0)HMDB
Chemical FormulaC22H45O9P
Average Molecular Weight484.567
Monoisotopic Molecular Weight484.280120027
IUPAC Name[(2S)-2,3-dihydroxypropoxy][(2R)-3-(hexadecanoyloxy)-2-hydroxypropoxy]phosphinic acid
Traditional Name(2S)-2,3-dihydroxypropoxy((2R)-3-(hexadecanoyloxy)-2-hydroxypropoxy)phosphinic acid
CAS Registry Number116870-26-9
SMILES
CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(O)(=O)OC[C@@H](O)CO
InChI Identifier
InChI=1S/C22H45O9P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-22(26)29-17-21(25)19-31-32(27,28)30-18-20(24)16-23/h20-21,23-25H,2-19H2,1H3,(H,27,28)/t20-,21+/m0/s1
InChI KeyBVJSKAUUFXBDOB-LEWJYISDSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as lysophosphatidylglycerols. These are glycerophosphoglycerols (molecules containing a glycerol moiety attached to the phosphate group linked to a glycerol) in which only one fatty acid is bonded to the 1-glycerol moiety (through an ester linkage).
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoglycerols
Direct ParentLysophosphatidylglycerols
Alternative Parents
Substituents
  • Monoacylglycerophosphoglycerol
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Fatty acyl
  • Alkyl phosphate
  • Phosphoric acid ester
  • Carboxylic acid ester
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Carbonyl group
  • Primary alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.24ALOGPS
logP4.02ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)1.89ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area142.75 ŲChemAxon
Rotatable Bond Count24ChemAxon
Refractivity121.72 m³·mol⁻¹ChemAxon
Polarizability54.1 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+205.57830932474
DeepCCS[M-H]-201.70530932474
DeepCCS[M-2H]-238.10130932474
DeepCCS[M+Na]+214.39330932474
AllCCS[M+H]+221.532859911
AllCCS[M+H-H2O]+219.932859911
AllCCS[M+NH4]+222.932859911
AllCCS[M+Na]+223.332859911
AllCCS[M-H]-217.032859911
AllCCS[M+Na-2H]-219.532859911
AllCCS[M+HCOO]-222.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
LysoPG(16:0/0:0)CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(O)(=O)OC[C@@H](O)CO4028.9Standard polar33892256
LysoPG(16:0/0:0)CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(O)(=O)OC[C@@H](O)CO3244.3Standard non polar33892256
LysoPG(16:0/0:0)CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(O)(=O)OC[C@@H](O)CO3609.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
LysoPG(16:0/0:0),1TMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](O)CO)O[Si](C)(C)C3575.1Semi standard non polar33892256
LysoPG(16:0/0:0),1TMS,isomer #2CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)OC[C@H](CO)O[Si](C)(C)C3546.5Semi standard non polar33892256
LysoPG(16:0/0:0),1TMS,isomer #3CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)OC[C@@H](O)CO[Si](C)(C)C3512.4Semi standard non polar33892256
LysoPG(16:0/0:0),1TMS,isomer #4CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@@H](O)CO)O[Si](C)(C)C3570.9Semi standard non polar33892256
LysoPG(16:0/0:0),2TMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO)O[Si](C)(C)C)O[Si](C)(C)C3556.1Semi standard non polar33892256
LysoPG(16:0/0:0),2TMS,isomer #2CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](O)CO[Si](C)(C)C)O[Si](C)(C)C3537.2Semi standard non polar33892256
LysoPG(16:0/0:0),2TMS,isomer #3CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO)O[Si](C)(C)C)O[Si](C)(C)C3569.3Semi standard non polar33892256
LysoPG(16:0/0:0),2TMS,isomer #4CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C3537.7Semi standard non polar33892256
LysoPG(16:0/0:0),2TMS,isomer #5CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@H](CO)O[Si](C)(C)C)O[Si](C)(C)C3579.7Semi standard non polar33892256
LysoPG(16:0/0:0),2TMS,isomer #6CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@@H](O)CO[Si](C)(C)C)O[Si](C)(C)C3555.6Semi standard non polar33892256
LysoPG(16:0/0:0),3TMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3530.6Semi standard non polar33892256
LysoPG(16:0/0:0),3TMS,isomer #2CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3556.3Semi standard non polar33892256
LysoPG(16:0/0:0),3TMS,isomer #3CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3558.8Semi standard non polar33892256
LysoPG(16:0/0:0),3TMS,isomer #4CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3562.3Semi standard non polar33892256
LysoPG(16:0/0:0),4TMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3539.4Semi standard non polar33892256
LysoPG(16:0/0:0),4TMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3264.6Standard non polar33892256
LysoPG(16:0/0:0),4TMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3777.4Standard polar33892256
LysoPG(16:0/0:0),1TBDMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](O)CO)O[Si](C)(C)C(C)(C)C3812.7Semi standard non polar33892256
LysoPG(16:0/0:0),1TBDMS,isomer #2CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)OC[C@H](CO)O[Si](C)(C)C(C)(C)C3801.4Semi standard non polar33892256
LysoPG(16:0/0:0),1TBDMS,isomer #3CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)OC[C@@H](O)CO[Si](C)(C)C(C)(C)C3789.6Semi standard non polar33892256
LysoPG(16:0/0:0),1TBDMS,isomer #4CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@@H](O)CO)O[Si](C)(C)C(C)(C)C3798.1Semi standard non polar33892256
LysoPG(16:0/0:0),2TBDMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4035.1Semi standard non polar33892256
LysoPG(16:0/0:0),2TBDMS,isomer #2CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](O)CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4028.0Semi standard non polar33892256
LysoPG(16:0/0:0),2TBDMS,isomer #3CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4043.0Semi standard non polar33892256
LysoPG(16:0/0:0),2TBDMS,isomer #4CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)OC[C@H](CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4028.2Semi standard non polar33892256
LysoPG(16:0/0:0),2TBDMS,isomer #5CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@H](CO)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4031.2Semi standard non polar33892256
LysoPG(16:0/0:0),2TBDMS,isomer #6CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@@H](O)CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4021.5Semi standard non polar33892256
LysoPG(16:0/0:0),3TBDMS,isomer #1CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4257.0Semi standard non polar33892256
LysoPG(16:0/0:0),3TBDMS,isomer #2CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4248.7Semi standard non polar33892256
LysoPG(16:0/0:0),3TBDMS,isomer #3CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4251.2Semi standard non polar33892256
LysoPG(16:0/0:0),3TBDMS,isomer #4CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(OC[C@H](CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4249.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - LysoPG(16:0/0:0) GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - LysoPG(16:0/0:0) GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPG(16:0/0:0) 10V, Negative-QTOFsplash10-001i-0000900000-6601011f138ae3d70cc12021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPG(16:0/0:0) 20V, Negative-QTOFsplash10-001i-0000900000-6601011f138ae3d70cc12021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPG(16:0/0:0) 40V, Negative-QTOFsplash10-0a59-0191700000-7ec41cf244350dc728842021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue Locations
  • Placenta
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24823104
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound42607483
PDB IDNot Available
ChEBI ID75376
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Elshenawy S, Pinney SE, Stuart T, Doulias PT, Zura G, Parry S, Elovitz MA, Bennett MJ, Bansal A, Strauss JF 3rd, Ischiropoulos H, Simmons RA: The Metabolomic Signature of the Placenta in Spontaneous Preterm Birth. Int J Mol Sci. 2020 Feb 4;21(3). pii: ijms21031043. doi: 10.3390/ijms21031043. [PubMed:32033212 ]