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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-03-31 18:46:24 UTC

Update Date

2022-10-24 19:44:57 UTC

HMDB ID

HMDB0241371

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(9E)-3-Hydroxytetradec-5-enedioylcarnitine

Description

(9E)-3-Hydroxytetradec-5-enedioylcarnitine is an acylcarnitine. More specifically, it is an (9E)-3-hydroxytetradec-5-enedioic acid ester of carnitine. Acylcarnitines were first discovered more than 70 year ago (PMID: 13825279 ). It is believed that there are more than 1000 types of acylcarnitines in the human body. The general role of acylcarnitines is to transport acyl-groups (organic acids and fatty acids) from the cytoplasm into the mitochondria so that they can be broken down to produce energy. This process is known as beta-oxidation. According to a recent review (PMID: 35710135 ), acylcarnitines (ACs) can be classified into 9 different categories depending on the type and size of their acyl-group: 1) short-chain ACs; 2) medium-chain ACs; 3) long-chain ACs; 4) very long-chain ACs; 5) hydroxy ACs; 6) branched chain ACs; 7) unsaturated ACs; 8) dicarboxylic ACs and 9) miscellaneous ACs. Short-chain ACs have acyl-groups with two to five carbons (C2-C5), medium-chain ACs have acyl-groups with six to thirteen carbons (C6-C13), long-chain ACs have acyl-groups with fourteen to twenty once carbons (C14-C21) and very long-chain ACs have acyl groups with more than 22 carbons. (9E)-3-Hydroxytetradec-5-enedioylcarnitine is therefore classified as a long chain AC. As a long-chain acylcarnitine (9E)-3-Hydroxytetradec-5-enedioylcarnitine is generally formed through esterification with long-chain fatty acids obtained from the diet. The main function of most long-chain acylcarnitines is to ensure long chain fatty acid transport into the mitochondria (PMID: 22804748 ). Altered levels of long-chain acylcarnitines can serve as useful markers for inherited disorders of long-chain fatty acid metabolism. Carnitine palmitoyltransferase I (CPT I, EC:2.3.1.21) is involved in the synthesis of long-chain acylcarnitines (more than C12) on the mitochondrial outer membrane. Elevated serum/plasma levels of long-chain acylcarnitines are not only markers for incomplete FA oxidation but also are indicators of altered carbohydrate and lipid metabolism. High serum concentrations of long-chain acylcarnitines in the postprandial or fed state are markers of insulin resistance and arise from insulin's inability to inhibit CPT-1-dependent fatty acid metabolism in muscles and the heart (PMID: 19073774 ). Increased intracellular content of long-chain acylcarnitines is thought to serve as a feedback inhibition mechanism of insulin action (PMID: 23258903 ). In healthy subjects, increased concentrations of insulin effectively inhibits long-chain acylcarnitine production. Several studies have also found increased levels of circulating long-chain acylcarnitines in chronic heart failure patients (PMID: 26796394 ). The study of acylcarnitines is an active area of research and it is likely that many novel acylcarnitines will be discovered in the coming years. It is also likely that many novel roles in health and disease will be uncovered. An excellent review of the current state of knowledge for acylcarnitines is available (PMID: 35710135 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652303312120462D          

 29 28  0  0  0  0            999 V2000
    2.8066    1.6204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    1.6204    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8092    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5237    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2381    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9526    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6671    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.9526    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    4.5079    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    3.9336    5.2224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1086    3.7934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    4.9204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  4  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
  5 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 26 29  1  0  0  0  0
M  CHG  2   3  -1  26   1
M  END

HMDB0241371
     RDKit          3D
(9E)-3-Hydroxytetradec-5-enedioylcarnitine
 66 65  0  0  0  0  0  0  0  0999 V2000
   -8.2717   -0.4515   -0.4598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0964   -1.2180   -0.1138 N   0  0  0  0  0  4  0  0  0  0  0  0
   -7.2920   -1.8913    1.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1266   -2.3413   -1.1288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9279   -0.4732   -0.2996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2437    0.3163    0.7179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8119    1.6001    1.2006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0494    1.7294    1.8864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8032    0.8833    2.3706 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5319    3.0682    2.0609 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.0069    0.7961    0.0457 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7809    0.4587    0.5771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7560   -0.2438    1.6129 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5521    0.9481   -0.1105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3079    0.4661    0.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2662    0.9178    1.9204 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9574    0.8980   -0.0593 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1166    0.4128   -1.4683 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4001    0.8921   -2.0521 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5720    0.3984   -1.2728 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8850    0.8939   -1.8970 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9618    0.3159   -1.0076 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8094    1.0961   -0.3657 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8600    0.5194    0.5031 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7948   -0.9884    0.5258 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8381   -1.6153    1.3911 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2156   -1.3189    0.9838 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1825   -1.7583    1.6989 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5862   -0.5955   -0.1225 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7713   -0.7963   -1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9933   -0.5031    0.3713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9640    0.6197   -0.5735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5731   -1.5005    1.8882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3048   -1.6572    1.5074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2555   -3.0019    1.0754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6421   -3.2340   -0.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1594   -2.5856   -1.3759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5446   -1.9891   -1.9923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1721   -1.2027   -0.7877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0667    0.2417   -1.2052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8820   -0.2675    1.5981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8934    2.2626    0.2470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9606    2.1406    1.7498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5480    0.6616   -1.1770 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5561    2.0535   -0.0690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3498   -0.6413    0.6364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8029    1.7479    2.0479 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0244    2.0144   -0.0811 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7974    0.4598    0.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1436   -0.7013   -1.4240 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2429    0.6696   -2.1200 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4180    2.0039   -2.1333 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5243    0.5145   -3.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6221    0.7591   -0.2247 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6081   -0.7101   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9936    0.5451   -2.9413 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9104    1.9927   -1.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0481   -0.7590   -0.8887 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7289    2.1651   -0.4811 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7097    0.8376    1.5778 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8657    0.9074    0.2368 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9404   -1.4094   -0.5103 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7927   -1.2687    0.9289 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7093   -2.7295    1.2998 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6525   -1.4039    2.4707 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3528    0.0490   -0.0615 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  2  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  6 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  3
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  3 33  1  0
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  4 38  1  0
  5 39  1  0
  5 40  1  0
  6 41  1  0
  7 42  1  0
  7 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  0
 19 53  1  0
 20 54  1  0
 20 55  1  0
 21 56  1  0
 21 57  1  0
 22 58  1  0
 23 59  1  0
 24 60  1  0
 24 61  1  0
 25 62  1  0
 25 63  1  0
 26 64  1  0
 26 65  1  0
 29 66  1  0
M  CHG  2   2   1  10  -1
M  END


  Mrv1652303312120462D          

 29 28  0  0  0  0            999 V2000
    2.8066    1.6204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    1.6204    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    4.0954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0947    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8092    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5237    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2381    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9526    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6671    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.9526    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    4.5079    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    3.9336    5.2224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1086    3.7934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    4.9204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  4  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
  5 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 26 29  1  0  0  0  0
M  CHG  2   3  -1  26   1
M  END
> <DATABASE_ID>
HMDB0241371

> <DATABASE_NAME>
hmdb

> <SMILES>
C[N+](C)(C)CC(CC([O-])=O)OC(=O)CC(O)CCCCCC=CCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C21H37NO7/c1-22(2,3)16-18(15-20(26)27)29-21(28)14-17(23)12-10-8-6-4-5-7-9-11-13-19(24)25/h5,7,17-18,23H,4,6,8-16H2,1-3H3,(H-,24,25,26,27)

> <INCHI_KEY>
PJOMAXRDGWJCAU-UHFFFAOYSA-N

> <FORMULA>
C21H37NO7

> <MOLECULAR_WEIGHT>
415.527

> <EXACT_MASS>
415.257002535

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
46.333607693988725

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(13-carboxy-3-hydroxytridec-9-enoyl)oxy]-4-(trimethylazaniumyl)butanoate

> <JCHEM_LOGP>
-1.7685639644717452

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
4.9518992441496685

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.036211091466322

> <JCHEM_PKA_STRONGEST_BASIC>
-2.79876022260677

> <JCHEM_POLAR_SURFACE_AREA>
123.96000000000002

> <JCHEM_REFRACTIVITY>
132.17219999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3-[(13-carboxy-3-hydroxytridec-9-enoyl)oxy]-4-(trimethylammonio)butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0241371
     RDKit          3D
(9E)-3-Hydroxytetradec-5-enedioylcarnitine
 66 65  0  0  0  0  0  0  0  0999 V2000
   -8.2717   -0.4515   -0.4598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0964   -1.2180   -0.1138 N   0  0  0  0  0  4  0  0  0  0  0  0
   -7.2920   -1.8913    1.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1266   -2.3413   -1.1288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9279   -0.4732   -0.2996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2437    0.3163    0.7179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8119    1.6001    1.2006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0494    1.7294    1.8864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8032    0.8833    2.3706 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5319    3.0682    2.0609 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.0069    0.7961    0.0457 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7809    0.4587    0.5771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7560   -0.2438    1.6129 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5521    0.9481   -0.1105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3079    0.4661    0.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2662    0.9178    1.9204 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9574    0.8980   -0.0593 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1166    0.4128   -1.4683 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4001    0.8921   -2.0521 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5720    0.3984   -1.2728 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8850    0.8939   -1.8970 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9618    0.3159   -1.0076 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8094    1.0961   -0.3657 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8600    0.5194    0.5031 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7948   -0.9884    0.5258 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8381   -1.6153    1.3911 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2156   -1.3189    0.9838 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1825   -1.7583    1.6989 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5862   -0.5955   -0.1225 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7713   -0.7963   -1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9933   -0.5031    0.3713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9640    0.6197   -0.5735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5731   -1.5005    1.8882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3048   -1.6572    1.5074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2555   -3.0019    1.0754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6421   -3.2340   -0.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1594   -2.5856   -1.3759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5446   -1.9891   -1.9923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1721   -1.2027   -0.7877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0667    0.2417   -1.2052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8820   -0.2675    1.5981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8934    2.2626    0.2470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9606    2.1406    1.7498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5480    0.6616   -1.1770 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5561    2.0535   -0.0690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3498   -0.6413    0.6364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8029    1.7479    2.0479 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0244    2.0144   -0.0811 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7974    0.4598    0.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1436   -0.7013   -1.4240 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2429    0.6696   -2.1200 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4180    2.0039   -2.1333 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5243    0.5145   -3.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6221    0.7591   -0.2247 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6081   -0.7101   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9936    0.5451   -2.9413 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9104    1.9927   -1.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0481   -0.7590   -0.8887 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7289    2.1651   -0.4811 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7097    0.8376    1.5778 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8657    0.9074    0.2368 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9404   -1.4094   -0.5103 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7927   -1.2687    0.9289 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7093   -2.7295    1.2998 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6525   -1.4039    2.4707 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3528    0.0490   -0.0615 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  2  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  6 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  3
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  3 33  1  0
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  4 38  1  0
  5 39  1  0
  5 40  1  0
  6 41  1  0
  7 42  1  0
  7 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  0
 19 53  1  0
 20 54  1  0
 20 55  1  0
 21 56  1  0
 21 57  1  0
 22 58  1  0
 23 59  1  0
 24 60  1  0
 24 61  1  0
 25 62  1  0
 25 63  1  0
 26 64  1  0
 26 65  1  0
 29 66  1  0
M  CHG  2   2   1  10  -1
M  END

HEADER    PROTEIN                                 31-MAR-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   31-MAR-21         0                                  
HETATM    1  O   UNK     0       5.239   3.025   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       6.573   3.795   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       7.906   3.025   0.000  0.00  0.00           O-1
HETATM    4  C   UNK     0       6.573   5.335   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.906   6.105   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       9.240   5.335   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      10.574   6.105   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      10.574   7.645   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      11.907   5.335   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.241   6.105   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      13.241   7.645   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      14.575   5.335   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      15.908   6.105   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      17.242   5.335   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      18.576   6.105   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      19.909   5.335   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      21.243   6.105   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      22.577   5.335   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      23.910   6.105   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      25.244   5.335   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      26.578   6.105   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      27.912   5.335   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      29.245   6.105   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      27.912   3.795   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       7.906   7.645   0.000  0.00  0.00           C+0
HETATM   26  N   UNK     0       6.573   8.415   0.000  0.00  0.00           N+1
HETATM   27  C   UNK     0       7.343   9.748   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.803   7.081   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.239   9.185   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   25                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25    5   26                                                       
CONECT   26   25   27   28   29                                             
CONECT   27   26                                                            
CONECT   28   26                                                            
CONECT   29   26                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   56    0
END

COMPND    HMDB0241371
HETATM    1  C1  UNL     1      -8.272  -0.452  -0.460  1.00  0.00           C  
HETATM    2  N1  UNL     1      -7.096  -1.218  -0.114  1.00  0.00           N1+
HETATM    3  C2  UNL     1      -7.292  -1.891   1.125  1.00  0.00           C  
HETATM    4  C3  UNL     1      -7.127  -2.341  -1.129  1.00  0.00           C  
HETATM    5  C4  UNL     1      -5.928  -0.473  -0.300  1.00  0.00           C  
HETATM    6  C5  UNL     1      -5.244   0.316   0.718  1.00  0.00           C  
HETATM    7  C6  UNL     1      -5.812   1.600   1.201  1.00  0.00           C  
HETATM    8  C7  UNL     1      -7.049   1.729   1.886  1.00  0.00           C  
HETATM    9  O1  UNL     1      -7.803   0.883   2.371  1.00  0.00           O  
HETATM   10  O2  UNL     1      -7.532   3.068   2.061  1.00  0.00           O1-
HETATM   11  O3  UNL     1      -4.007   0.796   0.046  1.00  0.00           O  
HETATM   12  C8  UNL     1      -2.781   0.459   0.577  1.00  0.00           C  
HETATM   13  O4  UNL     1      -2.756  -0.244   1.613  1.00  0.00           O  
HETATM   14  C9  UNL     1      -1.552   0.948  -0.110  1.00  0.00           C  
HETATM   15  C10 UNL     1      -0.308   0.466   0.607  1.00  0.00           C  
HETATM   16  O5  UNL     1      -0.266   0.918   1.920  1.00  0.00           O  
HETATM   17  C11 UNL     1       0.957   0.898  -0.059  1.00  0.00           C  
HETATM   18  C12 UNL     1       1.117   0.413  -1.468  1.00  0.00           C  
HETATM   19  C13 UNL     1       2.400   0.892  -2.052  1.00  0.00           C  
HETATM   20  C14 UNL     1       3.572   0.398  -1.273  1.00  0.00           C  
HETATM   21  C15 UNL     1       4.885   0.894  -1.897  1.00  0.00           C  
HETATM   22  C16 UNL     1       5.962   0.316  -1.008  1.00  0.00           C  
HETATM   23  C17 UNL     1       6.809   1.096  -0.366  1.00  0.00           C  
HETATM   24  C18 UNL     1       7.860   0.519   0.503  1.00  0.00           C  
HETATM   25  C19 UNL     1       7.795  -0.988   0.526  1.00  0.00           C  
HETATM   26  C20 UNL     1       8.838  -1.615   1.391  1.00  0.00           C  
HETATM   27  C21 UNL     1      10.216  -1.319   0.984  1.00  0.00           C  
HETATM   28  O6  UNL     1      11.182  -1.758   1.699  1.00  0.00           O  
HETATM   29  O7  UNL     1      10.586  -0.595  -0.123  1.00  0.00           O  
HETATM   30  H1  UNL     1      -8.771  -0.796  -1.398  1.00  0.00           H  
HETATM   31  H2  UNL     1      -8.993  -0.503   0.371  1.00  0.00           H  
HETATM   32  H3  UNL     1      -7.964   0.620  -0.573  1.00  0.00           H  
HETATM   33  H4  UNL     1      -6.573  -1.500   1.888  1.00  0.00           H  
HETATM   34  H5  UNL     1      -8.305  -1.657   1.507  1.00  0.00           H  
HETATM   35  H6  UNL     1      -7.256  -3.002   1.075  1.00  0.00           H  
HETATM   36  H7  UNL     1      -6.642  -3.234  -0.701  1.00  0.00           H  
HETATM   37  H8  UNL     1      -8.159  -2.586  -1.376  1.00  0.00           H  
HETATM   38  H9  UNL     1      -6.545  -1.989  -1.992  1.00  0.00           H  
HETATM   39  H10 UNL     1      -5.172  -1.203  -0.788  1.00  0.00           H  
HETATM   40  H11 UNL     1      -6.067   0.242  -1.205  1.00  0.00           H  
HETATM   41  H12 UNL     1      -4.882  -0.267   1.598  1.00  0.00           H  
HETATM   42  H13 UNL     1      -5.893   2.263   0.247  1.00  0.00           H  
HETATM   43  H14 UNL     1      -4.961   2.141   1.750  1.00  0.00           H  
HETATM   44  H15 UNL     1      -1.548   0.662  -1.177  1.00  0.00           H  
HETATM   45  H16 UNL     1      -1.556   2.053  -0.069  1.00  0.00           H  
HETATM   46  H17 UNL     1      -0.350  -0.641   0.636  1.00  0.00           H  
HETATM   47  H18 UNL     1      -0.803   1.748   2.048  1.00  0.00           H  
HETATM   48  H19 UNL     1       1.024   2.014  -0.081  1.00  0.00           H  
HETATM   49  H20 UNL     1       1.797   0.460   0.533  1.00  0.00           H  
HETATM   50  H21 UNL     1       1.144  -0.701  -1.424  1.00  0.00           H  
HETATM   51  H22 UNL     1       0.243   0.670  -2.120  1.00  0.00           H  
HETATM   52  H23 UNL     1       2.418   2.004  -2.133  1.00  0.00           H  
HETATM   53  H24 UNL     1       2.524   0.514  -3.099  1.00  0.00           H  
HETATM   54  H25 UNL     1       3.622   0.759  -0.225  1.00  0.00           H  
HETATM   55  H26 UNL     1       3.608  -0.710  -1.334  1.00  0.00           H  
HETATM   56  H27 UNL     1       4.994   0.545  -2.941  1.00  0.00           H  
HETATM   57  H28 UNL     1       4.910   1.993  -1.808  1.00  0.00           H  
HETATM   58  H29 UNL     1       6.048  -0.759  -0.889  1.00  0.00           H  
HETATM   59  H30 UNL     1       6.729   2.165  -0.481  1.00  0.00           H  
HETATM   60  H31 UNL     1       7.710   0.838   1.578  1.00  0.00           H  
HETATM   61  H32 UNL     1       8.866   0.907   0.237  1.00  0.00           H  
HETATM   62  H33 UNL     1       7.940  -1.409  -0.510  1.00  0.00           H  
HETATM   63  H34 UNL     1       6.793  -1.269   0.929  1.00  0.00           H  
HETATM   64  H35 UNL     1       8.709  -2.729   1.300  1.00  0.00           H  
HETATM   65  H36 UNL     1       8.653  -1.404   2.471  1.00  0.00           H  
HETATM   66  H37 UNL     1      11.353   0.049  -0.061  1.00  0.00           H  
CONECT    1    2   30   31   32
CONECT    2    3    4    5
CONECT    3   33   34   35
CONECT    4   36   37   38
CONECT    5    6   39   40
CONECT    6    7   11   41
CONECT    7    8   42   43
CONECT    8    9    9   10
CONECT   11   12
CONECT   12   13   13   14
CONECT   14   15   44   45
CONECT   15   16   17   46
CONECT   16   47
CONECT   17   18   48   49
CONECT   18   19   50   51
CONECT   19   20   52   53
CONECT   20   21   54   55
CONECT   21   22   56   57
CONECT   22   23   23   58
CONECT   23   24   59
CONECT   24   25   60   61
CONECT   25   26   62   63
CONECT   26   27   64   65
CONECT   27   28   28   29
CONECT   29   66
END

HMDB0241371
     RDKit          3D
(9E)-3-Hydroxytetradec-5-enedioylcarnitine
 66 65  0  0  0  0  0  0  0  0999 V2000
   -8.2717   -0.4515   -0.4598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0964   -1.2180   -0.1138 N   0  0  0  0  0  4  0  0  0  0  0  0
   -7.2920   -1.8913    1.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1266   -2.3413   -1.1288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9279   -0.4732   -0.2996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2437    0.3163    0.7179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8119    1.6001    1.2006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0494    1.7294    1.8864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8032    0.8833    2.3706 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5319    3.0682    2.0609 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.0069    0.7961    0.0457 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7809    0.4587    0.5771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7560   -0.2438    1.6129 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5521    0.9481   -0.1105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3079    0.4661    0.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2662    0.9178    1.9204 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9574    0.8980   -0.0593 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1166    0.4128   -1.4683 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4001    0.8921   -2.0521 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5720    0.3984   -1.2728 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8850    0.8939   -1.8970 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9618    0.3159   -1.0076 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8094    1.0961   -0.3657 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8600    0.5194    0.5031 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7948   -0.9884    0.5258 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8381   -1.6153    1.3911 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2156   -1.3189    0.9838 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1825   -1.7583    1.6989 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5862   -0.5955   -0.1225 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7713   -0.7963   -1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9933   -0.5031    0.3713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9640    0.6197   -0.5735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5731   -1.5005    1.8882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3048   -1.6572    1.5074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2555   -3.0019    1.0754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6421   -3.2340   -0.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1594   -2.5856   -1.3759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5446   -1.9891   -1.9923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1721   -1.2027   -0.7877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0667    0.2417   -1.2052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8820   -0.2675    1.5981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8934    2.2626    0.2470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9606    2.1406    1.7498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5480    0.6616   -1.1770 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5561    2.0535   -0.0690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3498   -0.6413    0.6364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8029    1.7479    2.0479 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0244    2.0144   -0.0811 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7974    0.4598    0.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1436   -0.7013   -1.4240 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2429    0.6696   -2.1200 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4180    2.0039   -2.1333 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5243    0.5145   -3.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6221    0.7591   -0.2247 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6081   -0.7101   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9936    0.5451   -2.9413 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9104    1.9927   -1.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0481   -0.7590   -0.8887 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7289    2.1651   -0.4811 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7097    0.8376    1.5778 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8657    0.9074    0.2368 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9404   -1.4094   -0.5103 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7927   -1.2687    0.9289 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7093   -2.7295    1.2998 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6525   -1.4039    2.4707 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3528    0.0490   -0.0615 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  2  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  6 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  3
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  3 33  1  0
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  4 38  1  0
  5 39  1  0
  5 40  1  0
  6 41  1  0
  7 42  1  0
  7 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  0
 19 53  1  0
 20 54  1  0
 20 55  1  0
 21 56  1  0
 21 57  1  0
 22 58  1  0
 23 59  1  0
 24 60  1  0
 24 61  1  0
 25 62  1  0
 25 63  1  0
 26 64  1  0
 26 65  1  0
 29 66  1  0
M  CHG  2   2   1  10  -1
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₂₁H₃₇NO₇

Average Molecular Weight

415.527

Monoisotopic Molecular Weight

415.257002535

IUPAC Name

3-[(13-carboxy-3-hydroxytridec-9-enoyl)oxy]-4-(trimethylazaniumyl)butanoate

Traditional Name

3-[(13-carboxy-3-hydroxytridec-9-enoyl)oxy]-4-(trimethylammonio)butanoate

CAS Registry Number

Not Available

SMILES

C[N+](C)(C)CC(CC([O-])=O)OC(=O)CC(O)CCCCCC=CCCCC(O)=O

InChI Identifier

InChI=1S/C21H37NO7/c1-22(2,3)16-18(15-20(26)27)29-21(28)14-17(23)12-10-8-6-4-5-7-9-11-13-19(24)25/h5,7,17-18,23H,4,6,8-16H2,1-3H3,(H-,24,25,26,27)

InChI Key

PJOMAXRDGWJCAU-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyl carnitines. These are organic compounds containing a fatty acid with the carboxylic acid attached to carnitine through an ester bond.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Acyl carnitines

Alternative Parents

Substituents

Acyl-carnitine
Tricarboxylic acid or derivatives
Beta-hydroxy acid
Hydroxy acid
Tetraalkylammonium salt
Quaternary ammonium salt
Secondary alcohol
Carboxylic acid salt
Carboxylic acid ester
Carboxylic acid
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organic salt
Organic zwitterion
Organooxygen compound
Organonitrogen compound
Carbonyl group
Amine
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Health effect

Cancer

Breast cancer (PMID: 35710135)

Diabetes mellitus type 2 (PMID: 35710135)
Celiac disease (PMID: 35710135)
Inflammatory bowel disease (PMID: 35710135)

Circulatory system disorder

Cardiac disorder

Cardiovascular disease (PMID: 35710135)
Heart failure (PMID: 35710135)

Renal system and urinary system

Renal disorder

Renal cell carcinoma (PMID: 35710135)

Disposition

Biological location

Cell

All cells and tissues (PMID: 35710135)

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 35710135)

Excreta

Biofluid or Excreta

Urine (PMID: 35710135)

Cellular substructure

cytoplasm (PMID: 35710135)
mitochondrion matrix (PMID: 35710135)

Organelle

peroxisome (PMID: 35710135)

Source

Endogenous

Endogenous (HMDB: HMDB0241371)

Process

Not Available

Role

Biological role

Energy source (PMID: 35710135)

Industrial application

Pharmaceutical industry

Biomarker

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-1.8	ChemAxon
pKa (Strongest Acidic)	4.04	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	123.96 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	132.17 m³·mol⁻¹	ChemAxon
Polarizability	46.33 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	183.579	30932474
DeepCCS	[M-H]-	181.247	30932474
DeepCCS	[M-2H]-	214.463	30932474
DeepCCS	[M+Na]+	189.5	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(9E)-3-Hydroxytetradec-5-enedioylcarnitine	C[N+](C)(C)CC(CC([O-])=O)OC(=O)CC(O)CCCCCC=CCCCC(O)=O	4221.2	Standard polar	33892256
(9E)-3-Hydroxytetradec-5-enedioylcarnitine	C[N+](C)(C)CC(CC([O-])=O)OC(=O)CC(O)CCCCCC=CCCCC(O)=O	2374.2	Standard non polar	33892256
(9E)-3-Hydroxytetradec-5-enedioylcarnitine	C[N+](C)(C)CC(CC([O-])=O)OC(=O)CC(O)CCCCCC=CCCCC(O)=O	2906.8	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(9E)-3-Hydroxytetradec-5-enedioylcarnitine,1TMS,isomer #1	C[N+](C)(C)CC(CC(=O)[O-])OC(=O)CC(CCCCCC=CCCCC(=O)O)O[Si](C)(C)C	2985.7	Semi standard non polar	33892256
(9E)-3-Hydroxytetradec-5-enedioylcarnitine,1TMS,isomer #2	C[N+](C)(C)CC(CC(=O)[O-])OC(=O)CC(O)CCCCCC=CCCCC(=O)O[Si](C)(C)C	2963.5	Semi standard non polar	33892256
(9E)-3-Hydroxytetradec-5-enedioylcarnitine,2TMS,isomer #1	C[N+](C)(C)CC(CC(=O)[O-])OC(=O)CC(CCCCCC=CCCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C	2951.5	Semi standard non polar	33892256
(9E)-3-Hydroxytetradec-5-enedioylcarnitine,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(CCCCCC=CCCCC(=O)O)CC(=O)OC(CC(=O)[O-])C[N+](C)(C)C	3201.6	Semi standard non polar	33892256
(9E)-3-Hydroxytetradec-5-enedioylcarnitine,1TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OC(=O)CCCC=CCCCCCC(O)CC(=O)OC(CC(=O)[O-])C[N+](C)(C)C	3208.2	Semi standard non polar	33892256
(9E)-3-Hydroxytetradec-5-enedioylcarnitine,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)CCCC=CCCCCCC(CC(=O)OC(CC(=O)[O-])C[N+](C)(C)C)O[Si](C)(C)C(C)(C)C	3415.2	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine 10V, Positive-QTOF	Not Available	2021-04-06	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine 20V, Positive-QTOF	Not Available	2021-04-06	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine 40V, Positive-QTOF	Not Available	2021-04-06	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine 10V, Positive-QTOF	splash10-014i-0000900000-b92c3cf4cf6825dad8ca	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine 20V, Positive-QTOF	splash10-00kr-9000500000-fed741d8e1fa529a0bd5	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9E)-3-Hydroxytetradec-5-enedioylcarnitine 40V, Positive-QTOF	splash10-000i-9000000000-e9262cbaff8cb4ad0ba6	2021-09-22	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Blazenovic I, Kind T, Sa MR, Ji J, Vaniya A, Wancewicz B, Roberts BS, Torbasinovic H, Lee T, Mehta SS, Showalter MR, Song H, Kwok J, Jahn D, Kim J, Fiehn O: Structure Annotation of All Mass Spectra in Untargeted Metabolomics. Anal Chem. 2019 Feb 5;91(3):2155-2162. doi: 10.1021/acs.analchem.8b04698. Epub 2019 Jan 16. [PubMed:30608141 ]
FRITZ IB: Action of carnitine on long chain fatty acid oxidation by liver. Am J Physiol. 1959 Aug;197:297-304. doi: 10.1152/ajplegacy.1959.197.2.297. [PubMed:13825279 ]
Reuter SE, Evans AM: Carnitine and acylcarnitines: pharmacokinetic, pharmacological and clinical aspects. Clin Pharmacokinet. 2012 Sep 1;51(9):553-72. doi: 10.1007/BF03261931. [PubMed:22804748 ]
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Showing metabocard for (9E)-3-Hydroxytetradec-5-enedioylcarnitine (HMDB0241371)

MOL for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

3D MOL for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

3D SDF for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

3D-SDF for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

PDB for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

3D PDB for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

SMILES for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

INCHI for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

Structure for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

3D Structure for HMDB0241371 ((9E)-3-Hydroxytetradec-5-enedioylcarnitine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

NMR Spectra