Record Information |
---|
Version | 5.0 |
---|
Status | Detected but not Quantified |
---|
Creation Date | 2021-09-11 00:20:00 UTC |
---|
Update Date | 2021-10-01 18:58:20 UTC |
---|
HMDB ID | HMDB0247327 |
---|
Secondary Accession Numbers | None |
---|
Metabolite Identification |
---|
Common Name | 4-Amino-5-hydroxymethyl-2-methylpyrimidine |
---|
Description | 4-Amino-5-hydroxymethyl-2-methylpyrimidine, also known as toxopyrimidine or pyramine, belongs to the class of organic compounds known as hydropyrimidines. Hydropyrimidines are compounds containing a hydrogenated pyrimidine ring (i.e. containing less than the maximum number of double bonds.). 4-Amino-5-hydroxymethyl-2-methylpyrimidine has been detected, but not quantified in, several different foods, such as dates (Phoenix dactylifera), mamey sapotes (Pouteria sapota), pepper (spice), allspices (Pimenta dioica), and common sages (Salvia officinalis). This could make 4-amino-5-hydroxymethyl-2-methylpyrimidine a potential biomarker for the consumption of these foods. 4-Amino-5-hydroxymethyl-2-methylpyrimidine is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review a significant number of articles have been published on 4-Amino-5-hydroxymethyl-2-methylpyrimidine. This compound has been identified in human blood as reported by (PMID: 31557052 ). 4-amino-5-hydroxymethyl-2-methylpyrimidine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 4-Amino-5-hydroxymethyl-2-methylpyrimidine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources. |
---|
Structure | InChI=1S/C6H9N3O/c1-4-8-2-5(3-10)6(7)9-4/h2,10H,3H2,1H3,(H2,7,8,9) |
---|
Synonyms | Value | Source |
---|
2-Methyl-4-amino-5-hydroxymethylpyrimidine | ChEBI | 4-Amino-2-methyl-5-hydroxymethylpyrimidine | ChEBI | 4-Amino-2-methyl-5-pyrimidinemethanol | ChEBI | Atoxopyrimidine | ChEBI | Pyramin | ChEBI | Pyramine | ChEBI | Toxopyrimidine | ChEBI | HMP | Kegg | HMP CPD | HMDB |
|
---|
Chemical Formula | C6H9N3O |
---|
Average Molecular Weight | 139.1552 |
---|
Monoisotopic Molecular Weight | 139.074561925 |
---|
IUPAC Name | (4-amino-2-methylpyrimidin-5-yl)methanol |
---|
Traditional Name | toxopyrimidine |
---|
CAS Registry Number | Not Available |
---|
SMILES | CC1=NC=C(CO)C(N)=N1 |
---|
InChI Identifier | InChI=1S/C6H9N3O/c1-4-8-2-5(3-10)6(7)9-4/h2,10H,3H2,1H3,(H2,7,8,9) |
---|
InChI Key | VUTBELPREDJDDH-UHFFFAOYSA-N |
---|
Chemical Taxonomy |
---|
Description | Belongs to the class of organic compounds known as hydropyrimidines. Hydropyrimidines are compounds containing a hydrogenated pyrimidine ring (i.E. Containing less than the maximum number of double bonds.). |
---|
Kingdom | Organic compounds |
---|
Super Class | Organoheterocyclic compounds |
---|
Class | Diazines |
---|
Sub Class | Pyrimidines and pyrimidine derivatives |
---|
Direct Parent | Hydropyrimidines |
---|
Alternative Parents | |
---|
Substituents | - Imidolactam
- Hydropyrimidine
- Heteroaromatic compound
- Azacycle
- Organic nitrogen compound
- Organic oxygen compound
- Organopnictogen compound
- Hydrocarbon derivative
- Aromatic alcohol
- Primary alcohol
- Organooxygen compound
- Organonitrogen compound
- Alcohol
- Aromatic heteromonocyclic compound
|
---|
Molecular Framework | Aromatic heteromonocyclic compounds |
---|
External Descriptors | |
---|
Ontology |
---|
Physiological effect | Not Available |
---|
Disposition | |
---|
Process | |
---|
Role | Not Available |
---|
Physical Properties |
---|
State | Not Available |
---|
Experimental Molecular Properties | Property | Value | Reference |
---|
Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
|
---|
Experimental Chromatographic Properties | Not Available |
---|
Predicted Molecular Properties | |
---|
Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
---|
4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C)C(N[Si](C)(C)C)=N1 | 1621.5 | Semi standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C)C(N[Si](C)(C)C)=N1 | 1605.1 | Standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C)C(N[Si](C)(C)C)=N1 | 2181.9 | Standard polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TMS,isomer #2 | CC1=NC=C(CO)C(N([Si](C)(C)C)[Si](C)(C)C)=N1 | 1635.6 | Semi standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TMS,isomer #2 | CC1=NC=C(CO)C(N([Si](C)(C)C)[Si](C)(C)C)=N1 | 1791.1 | Standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TMS,isomer #2 | CC1=NC=C(CO)C(N([Si](C)(C)C)[Si](C)(C)C)=N1 | 2161.1 | Standard polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,3TMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C)C(N([Si](C)(C)C)[Si](C)(C)C)=N1 | 1682.8 | Semi standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,3TMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C)C(N([Si](C)(C)C)[Si](C)(C)C)=N1 | 1747.6 | Standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,3TMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C)C(N([Si](C)(C)C)[Si](C)(C)C)=N1 | 1946.3 | Standard polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TBDMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C(C)(C)C)C(N[Si](C)(C)C(C)(C)C)=N1 | 2089.3 | Semi standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TBDMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C(C)(C)C)C(N[Si](C)(C)C(C)(C)C)=N1 | 1996.5 | Standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TBDMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C(C)(C)C)C(N[Si](C)(C)C(C)(C)C)=N1 | 2367.1 | Standard polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TBDMS,isomer #2 | CC1=NC=C(CO)C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=N1 | 2067.5 | Semi standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TBDMS,isomer #2 | CC1=NC=C(CO)C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=N1 | 2191.7 | Standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,2TBDMS,isomer #2 | CC1=NC=C(CO)C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=N1 | 2287.1 | Standard polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,3TBDMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C(C)(C)C)C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=N1 | 2283.4 | Semi standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,3TBDMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C(C)(C)C)C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=N1 | 2349.0 | Standard non polar | 33892256 | 4-Amino-5-hydroxymethyl-2-methylpyrimidine,3TBDMS,isomer #1 | CC1=NC=C(CO[Si](C)(C)C(C)(C)C)C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=N1 | 2280.2 | Standard polar | 33892256 |
|
---|
| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
---|
Predicted GC-MS | Predicted GC-MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine GC-MS (Non-derivatized) - 70eV, Positive | splash10-0abi-1900000000-e3106b1f3a699dcbb5cf | 2016-09-22 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine GC-MS (TMS_1_1) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine GC-MS (TMS_1_2) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine GC-MS (TBDMS_1_1) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine GC-MS (TBDMS_1_2) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
---|
Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 10V, Positive-QTOF | splash10-006x-0900000000-1464721132642f06c763 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 20V, Positive-QTOF | splash10-00di-1900000000-ffcb98d194c46375afed | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 40V, Positive-QTOF | splash10-007k-9200000000-146c29035e7732b4a386 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 10V, Negative-QTOF | splash10-000i-0900000000-a6fee6edf0aa915e501a | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 20V, Negative-QTOF | splash10-0a4r-4900000000-7fb22624813fc7a88208 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 40V, Negative-QTOF | splash10-0006-9000000000-fd0e2a1b16eb26493e89 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 10V, Positive-QTOF | splash10-00dl-0900000000-bcee92b22282400d9aa9 | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 20V, Positive-QTOF | splash10-00e9-7900000000-c3b2ba29d4a3384fbf9f | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 40V, Positive-QTOF | splash10-00lu-9000000000-cecde0be355431a2920b | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 10V, Negative-QTOF | splash10-000i-0900000000-cfc1d884f8ea3db6b6a6 | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 20V, Negative-QTOF | splash10-006x-8900000000-bb08081d11c0ce993537 | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 4-Amino-5-hydroxymethyl-2-methylpyrimidine 40V, Negative-QTOF | splash10-014l-9000000000-f27a78acaec6ce875983 | 2021-10-12 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
---|
Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-10-13 | Wishart Lab | View Spectrum |
|
---|