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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 02:18:16 UTC
Update Date2021-09-26 22:59:19 UTC
HMDB IDHMDB0248821
Secondary Accession NumbersNone
Metabolite Identification
Common NameZidovudine monophosphate
DescriptionZidovudine monophosphate, also known as AZTMP or ZDV 5'-monophosphate, belongs to the class of organic compounds known as hydroxypyrimidines. These are organic compounds containing a hydroxyl group attached to a pyrimidine ring. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions. Based on a literature review a significant number of articles have been published on Zidovudine monophosphate. This compound has been identified in human blood as reported by (PMID: 31557052 ). Zidovudine monophosphate is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Zidovudine monophosphate is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
Zidovudine monophosphoric acidGenerator
3'-Azido-2',3'-deoxythymidine 5'-monophosphateHMDB
3'-Azido-3'-deoxythymidine 5'-phosphateHMDB
3'-Azido-3'-deoxythymidine 5'phosphateHMDB
3'-Azido-3'-deoxythymidine 5'phosphate, diammonium saltHMDB
3'-Azidodeoxythymidine monophosphateHMDB
AZTMPHMDB
ZDV 5'-monoPhosphateHMDB
ZDVMPHMDB
Zidovudine 5'-monophosphateHMDB
Chemical FormulaC10H14N5O7P
Average Molecular Weight347.224
Monoisotopic Molecular Weight347.063084809
IUPAC Name{[3-azido-5-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methoxy}phosphonic acid
Traditional Name[3-azido-5-(5-methyl-2,4-dioxo-3H-pyrimidin-1-yl)oxolan-2-yl]methoxyphosphonic acid
CAS Registry NumberNot Available
SMILES
CC1=CN(C2CC(N=[N+]=[N-])C(COP(O)(O)=O)O2)C(=O)NC1=O
InChI Identifier
InChI=1S/C10H14N5O7P/c1-5-3-15(10(17)12-9(5)16)8-2-6(13-14-11)7(22-8)4-21-23(18,19)20/h3,6-8H,2,4H2,1H3,(H,12,16,17)(H2,18,19,20)
InChI KeyOIFWQOKDSPDILA-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydroxypyrimidines. These are organic compounds containing a hydroxyl group attached to a pyrimidine ring. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazines
Sub ClassPyrimidines and pyrimidine derivatives
Direct ParentHydroxypyrimidines
Alternative Parents
Substituents
  • Hydroxypyrimidine
  • Monoalkyl phosphate
  • Pyrimidone
  • Hydropyrimidine
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Heteroaromatic compound
  • Tetrahydrofuran
  • Azo compound
  • Azo imide
  • Oxacycle
  • Azacycle
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.04ALOGPS
logP-0.42ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)1.26ChemAxon
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area154.83 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity72.58 m³·mol⁻¹ChemAxon
Polarizability29.79 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+163.66630932474
DeepCCS[M-H]-160.88630932474
DeepCCS[M-2H]-196.01330932474
DeepCCS[M+Na]+171.93430932474
AllCCS[M+H]+173.032859911
AllCCS[M+H-H2O]+170.132859911
AllCCS[M+NH4]+175.832859911
AllCCS[M+Na]+176.632859911
AllCCS[M-H]-170.432859911
AllCCS[M+Na-2H]-170.132859911
AllCCS[M+HCOO]-169.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Zidovudine monophosphateCC1=CN(C2CC(N=[N+]=[N-])C(COP(O)(O)=O)O2)C(=O)NC1=O4121.6Standard polar33892256
Zidovudine monophosphateCC1=CN(C2CC(N=[N+]=[N-])C(COP(O)(O)=O)O2)C(=O)NC1=O2253.6Standard non polar33892256
Zidovudine monophosphateCC1=CN(C2CC(N=[N+]=[N-])C(COP(O)(O)=O)O2)C(=O)NC1=O2931.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Zidovudine monophosphate,1TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C)O2)C(=O)[NH]C1=O2966.2Semi standard non polar33892256
Zidovudine monophosphate,1TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C)O2)C(=O)[NH]C1=O2894.8Standard non polar33892256
Zidovudine monophosphate,1TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C)O2)C(=O)[NH]C1=O4607.5Standard polar33892256
Zidovudine monophosphate,1TMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O)O2)C(=O)N([Si](C)(C)C)C1=O2958.2Semi standard non polar33892256
Zidovudine monophosphate,1TMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O)O2)C(=O)N([Si](C)(C)C)C1=O2906.7Standard non polar33892256
Zidovudine monophosphate,1TMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O)O2)C(=O)N([Si](C)(C)C)C1=O5125.6Standard polar33892256
Zidovudine monophosphate,2TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C(=O)[NH]C1=O2969.6Semi standard non polar33892256
Zidovudine monophosphate,2TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C(=O)[NH]C1=O2959.4Standard non polar33892256
Zidovudine monophosphate,2TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C(=O)[NH]C1=O4112.5Standard polar33892256
Zidovudine monophosphate,2TMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C)O2)C(=O)N([Si](C)(C)C)C1=O2953.6Semi standard non polar33892256
Zidovudine monophosphate,2TMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C)O2)C(=O)N([Si](C)(C)C)C1=O2972.6Standard non polar33892256
Zidovudine monophosphate,2TMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C)O2)C(=O)N([Si](C)(C)C)C1=O4397.7Standard polar33892256
Zidovudine monophosphate,3TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C(=O)N([Si](C)(C)C)C1=O2963.5Semi standard non polar33892256
Zidovudine monophosphate,3TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C(=O)N([Si](C)(C)C)C1=O3015.6Standard non polar33892256
Zidovudine monophosphate,3TMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C(=O)N([Si](C)(C)C)C1=O3942.2Standard polar33892256
Zidovudine monophosphate,1TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C(=O)[NH]C1=O3200.9Semi standard non polar33892256
Zidovudine monophosphate,1TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C(=O)[NH]C1=O3132.5Standard non polar33892256
Zidovudine monophosphate,1TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C(=O)[NH]C1=O4704.3Standard polar33892256
Zidovudine monophosphate,1TBDMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O3186.9Semi standard non polar33892256
Zidovudine monophosphate,1TBDMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O3145.1Standard non polar33892256
Zidovudine monophosphate,1TBDMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O5024.4Standard polar33892256
Zidovudine monophosphate,2TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C(=O)[NH]C1=O3399.1Semi standard non polar33892256
Zidovudine monophosphate,2TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C(=O)[NH]C1=O3388.8Standard non polar33892256
Zidovudine monophosphate,2TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C(=O)[NH]C1=O4268.9Standard polar33892256
Zidovudine monophosphate,2TBDMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O3411.2Semi standard non polar33892256
Zidovudine monophosphate,2TBDMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O3401.8Standard non polar33892256
Zidovudine monophosphate,2TBDMS,isomer #2CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O4430.0Standard polar33892256
Zidovudine monophosphate,3TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O3584.9Semi standard non polar33892256
Zidovudine monophosphate,3TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O3594.6Standard non polar33892256
Zidovudine monophosphate,3TBDMS,isomer #1CC1=CN(C2CC(N=[N+]=[N-])C(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C(=O)N([Si](C)(C)C(C)(C)C)C1=O4079.9Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Zidovudine monophosphate GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-9311000000-321f4f80a8b0580e51302021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Zidovudine monophosphate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID1542
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound1600
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]