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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 13:22:57 UTC

Update Date

2021-09-26 23:08:01 UTC

HMDB ID

HMDB0254192

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Lucerastat

Description

1-butyl-2-(hydroxymethyl)piperidine-3,4,5-triol belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms. Based on a literature review very few articles have been published on 1-butyl-2-(hydroxymethyl)piperidine-3,4,5-triol. This compound has been identified in human blood as reported by (PMID: 31557052 ). Lucerastat is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Lucerastat is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0254192
     RDKit          3D
Lucerastat
 36 36  0  0  0  0  0  0  0  0999 V2000
    4.8146    0.0626    0.4202 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5964   -0.2557   -0.4403 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3280    0.3523    0.1844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2245    0.0165   -0.7512 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0858    0.5142   -0.3520 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8644    0.3315   -1.6117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2314    0.8956   -1.4819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9782    0.5322   -2.5944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9235    0.3454   -0.2587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1948   -0.1378   -0.5774 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0957   -0.7901    0.2738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7316   -1.2198    1.4709 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7174   -0.2582    0.6806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9356    0.4402    1.9763 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1699    0.9102    2.6285 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6820    0.1708   -0.2882 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7160    1.0791    0.9009 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0693   -0.7276    1.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4650   -1.3755   -0.3850 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7132   -0.0090   -1.4939 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2575   -0.0760    1.1767 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4679    1.4636    0.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4614    0.4308   -1.7516 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1749   -1.1016   -0.9252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3129    0.8615   -2.4192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8930   -0.7328   -1.8280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2182    2.0258   -1.4664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6579    0.9786   -3.4201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0721    1.1758    0.4414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7127   -0.3285    0.2185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0565   -1.5934   -0.4587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4000   -0.5795    1.7901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0790   -1.1435    0.8664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6728    1.2718    1.9119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4350   -0.3058    2.6628 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1281    0.7282    3.5943 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 13  5  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  6 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 11 31  1  0
 12 32  1  0
 13 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
M  END

  Mrv1533004161521242D          

 15 15  0  0  0  0            999 V2000
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0254192

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCN1CC(O)C(O)C(O)C1CO

> <INCHI_IDENTIFIER>
InChI=1S/C10H21NO4/c1-2-3-4-11-5-8(13)10(15)9(14)7(11)6-12/h7-10,12-15H,2-6H2,1H3

> <INCHI_KEY>
UQRORFVVSGFNRO-UHFFFAOYSA-N

> <FORMULA>
C10H21NO4

> <MOLECULAR_WEIGHT>
219.281

> <EXACT_MASS>
219.14705816

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
24.054803076313565

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-butyl-2-(hydroxymethyl)piperidine-3,4,5-triol

> <ALOGPS_LOGP>
-1.14

> <JCHEM_LOGP>
-1.178796231

> <ALOGPS_LOGS>
0.18

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
14.032374880430773

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.902158855063018

> <JCHEM_PKA_STRONGEST_BASIC>
8.49299815256285

> <JCHEM_POLAR_SURFACE_AREA>
84.16000000000001

> <JCHEM_REFRACTIVITY>
55.7427

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.31e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-butyl-2-(hydroxymethyl)piperidine-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0254192
     RDKit          3D
Lucerastat
 36 36  0  0  0  0  0  0  0  0999 V2000
    4.8146    0.0626    0.4202 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5964   -0.2557   -0.4403 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3280    0.3523    0.1844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2245    0.0165   -0.7512 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0858    0.5142   -0.3520 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8644    0.3315   -1.6117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2314    0.8956   -1.4819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9782    0.5322   -2.5944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9235    0.3454   -0.2587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1948   -0.1378   -0.5774 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0957   -0.7901    0.2738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7316   -1.2198    1.4709 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7174   -0.2582    0.6806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9356    0.4402    1.9763 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1699    0.9102    2.6285 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6820    0.1708   -0.2882 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7160    1.0791    0.9009 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0693   -0.7276    1.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4650   -1.3755   -0.3850 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7132   -0.0090   -1.4939 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2575   -0.0760    1.1767 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4679    1.4636    0.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4614    0.4308   -1.7516 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1749   -1.1016   -0.9252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3129    0.8615   -2.4192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8930   -0.7328   -1.8280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2182    2.0258   -1.4664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6579    0.9786   -3.4201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0721    1.1758    0.4414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7127   -0.3285    0.2185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0565   -1.5934   -0.4587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4000   -0.5795    1.7901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0790   -1.1435    0.8664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6728    1.2718    1.9119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4350   -0.3058    2.6628 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1281    0.7282    3.5943 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 13  5  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  6 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 11 31  1  0
 12 32  1  0
 13 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
M  END

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0       1.334   2.310   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -1.334   3.850   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   13                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11    5   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   30    0
END

COMPND    HMDB0254192
HETATM    1  C1  UNL     1       4.815   0.063   0.420  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.596  -0.256  -0.440  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.328   0.352   0.184  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.224   0.016  -0.751  1.00  0.00           C  
HETATM    5  N1  UNL     1      -0.086   0.514  -0.352  1.00  0.00           N  
HETATM    6  C5  UNL     1      -0.864   0.331  -1.612  1.00  0.00           C  
HETATM    7  C6  UNL     1      -2.231   0.896  -1.482  1.00  0.00           C  
HETATM    8  O1  UNL     1      -2.978   0.532  -2.594  1.00  0.00           O  
HETATM    9  C7  UNL     1      -2.924   0.345  -0.259  1.00  0.00           C  
HETATM   10  O2  UNL     1      -4.195  -0.138  -0.577  1.00  0.00           O  
HETATM   11  C8  UNL     1      -2.096  -0.790   0.274  1.00  0.00           C  
HETATM   12  O3  UNL     1      -2.732  -1.220   1.471  1.00  0.00           O  
HETATM   13  C9  UNL     1      -0.717  -0.258   0.681  1.00  0.00           C  
HETATM   14  C10 UNL     1      -0.936   0.440   1.976  1.00  0.00           C  
HETATM   15  O4  UNL     1       0.170   0.910   2.629  1.00  0.00           O  
HETATM   16  H1  UNL     1       5.682   0.171  -0.288  1.00  0.00           H  
HETATM   17  H2  UNL     1       4.716   1.079   0.901  1.00  0.00           H  
HETATM   18  H3  UNL     1       5.069  -0.728   1.137  1.00  0.00           H  
HETATM   19  H4  UNL     1       3.465  -1.376  -0.385  1.00  0.00           H  
HETATM   20  H5  UNL     1       3.713  -0.009  -1.494  1.00  0.00           H  
HETATM   21  H6  UNL     1       2.258  -0.076   1.177  1.00  0.00           H  
HETATM   22  H7  UNL     1       2.468   1.464   0.169  1.00  0.00           H  
HETATM   23  H8  UNL     1       1.461   0.431  -1.752  1.00  0.00           H  
HETATM   24  H9  UNL     1       1.175  -1.102  -0.925  1.00  0.00           H  
HETATM   25  H10 UNL     1      -0.313   0.861  -2.419  1.00  0.00           H  
HETATM   26  H11 UNL     1      -0.893  -0.733  -1.828  1.00  0.00           H  
HETATM   27  H12 UNL     1      -2.218   2.026  -1.466  1.00  0.00           H  
HETATM   28  H13 UNL     1      -2.658   0.979  -3.420  1.00  0.00           H  
HETATM   29  H14 UNL     1      -3.072   1.176   0.441  1.00  0.00           H  
HETATM   30  H15 UNL     1      -4.713  -0.328   0.218  1.00  0.00           H  
HETATM   31  H16 UNL     1      -2.057  -1.593  -0.459  1.00  0.00           H  
HETATM   32  H17 UNL     1      -3.400  -0.580   1.790  1.00  0.00           H  
HETATM   33  H18 UNL     1      -0.079  -1.143   0.866  1.00  0.00           H  
HETATM   34  H19 UNL     1      -1.673   1.272   1.912  1.00  0.00           H  
HETATM   35  H20 UNL     1      -1.435  -0.306   2.663  1.00  0.00           H  
HETATM   36  H21 UNL     1       0.128   0.728   3.594  1.00  0.00           H  
CONECT    1    2   16   17   18
CONECT    2    3   19   20
CONECT    3    4   21   22
CONECT    4    5   23   24
CONECT    5    6   13
CONECT    6    7   25   26
CONECT    7    8    9   27
CONECT    8   28
CONECT    9   10   11   29
CONECT   10   30
CONECT   11   12   13   31
CONECT   12   32
CONECT   13   14   33
CONECT   14   15   34   35
CONECT   15   36
END

HMDB0254192
     RDKit          3D
Lucerastat
 36 36  0  0  0  0  0  0  0  0999 V2000
    4.8146    0.0626    0.4202 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5964   -0.2557   -0.4403 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3280    0.3523    0.1844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2245    0.0165   -0.7512 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0858    0.5142   -0.3520 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8644    0.3315   -1.6117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2314    0.8956   -1.4819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9782    0.5322   -2.5944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9235    0.3454   -0.2587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1948   -0.1378   -0.5774 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0957   -0.7901    0.2738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7316   -1.2198    1.4709 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7174   -0.2582    0.6806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9356    0.4402    1.9763 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1699    0.9102    2.6285 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6820    0.1708   -0.2882 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7160    1.0791    0.9009 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0693   -0.7276    1.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4650   -1.3755   -0.3850 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7132   -0.0090   -1.4939 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2575   -0.0760    1.1767 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4679    1.4636    0.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4614    0.4308   -1.7516 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1749   -1.1016   -0.9252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3129    0.8615   -2.4192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8930   -0.7328   -1.8280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2182    2.0258   -1.4664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6579    0.9786   -3.4201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0721    1.1758    0.4414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7127   -0.3285    0.2185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0565   -1.5934   -0.4587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4000   -0.5795    1.7901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0790   -1.1435    0.8664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6728    1.2718    1.9119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4350   -0.3058    2.6628 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1281    0.7282    3.5943 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 13  5  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  6 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 11 31  1  0
 12 32  1  0
 13 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₁₀H₂₁NO₄

Average Molecular Weight

219.281

Monoisotopic Molecular Weight

219.14705816

IUPAC Name

1-butyl-2-(hydroxymethyl)piperidine-3,4,5-triol

Traditional Name

1-butyl-2-(hydroxymethyl)piperidine-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CCCCN1CC(O)C(O)C(O)C1CO

InChI Identifier

InChI=1S/C10H21NO4/c1-2-3-4-11-5-8(13)10(15)9(14)7(11)6-12/h7-10,12-15H,2-6H2,1H3

InChI Key

UQRORFVVSGFNRO-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Piperidines

Sub Class

Not Available

Direct Parent

Piperidines

Alternative Parents

Substituents

Piperidine
1,2-aminoalcohol
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Polyol
Azacycle
Organic nitrogen compound
Primary alcohol
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Amine
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (HMDB: HMDB0254192)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-1.1	ALOGPS
logP	-1.2	ChemAxon
logS	0.18	ALOGPS
pKa (Strongest Acidic)	12.9	ChemAxon
pKa (Strongest Basic)	8.49	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	84.16 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	55.74 m³·mol⁻¹	ChemAxon
Polarizability	24.05 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	147.193	30932474
DeepCCS	[M-H]-	143.426	30932474
DeepCCS	[M-2H]-	180.628	30932474
DeepCCS	[M+Na]+	156.211	30932474
AllCCS	[M+H]+	152.5	32859911
AllCCS	[M+H-H2O]+	148.7	32859911
AllCCS	[M+NH4]+	155.9	32859911
AllCCS	[M+Na]+	156.9	32859911
AllCCS	[M-H]-	151.4	32859911
AllCCS	[M+Na-2H]-	152.1	32859911
AllCCS	[M+HCOO]-	153.0	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Lucerastat	CCCCN1CC(O)C(O)C(O)C1CO	3461.3	Standard polar	33892256
Lucerastat	CCCCN1CC(O)C(O)C(O)C1CO	1920.6	Standard non polar	33892256
Lucerastat	CCCCN1CC(O)C(O)C(O)C1CO	1964.5	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (Non-derivatized) - 70eV, Positive	splash10-0zos-3910000000-487652a19fde10ffe683	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_3_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_3_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_3_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TMS_4_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_1_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_2_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_2_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Lucerastat GC-MS (TBDMS_2_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lucerastat 10V, Positive-QTOF	splash10-00di-0090000000-66c377bd2995bc818438	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lucerastat 20V, Positive-QTOF	splash10-00di-2590000000-6286d923af7492795fcf	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lucerastat 40V, Positive-QTOF	splash10-05gi-9000000000-ba860e30faee784f9ef1	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lucerastat 10V, Negative-QTOF	splash10-014i-0090000000-32e6ad4c1e36e0f2fb66	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lucerastat 20V, Negative-QTOF	splash10-014i-0290000000-b7fd37a3d8a9c58a1be0	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lucerastat 40V, Negative-QTOF	splash10-0a4l-9310000000-fb18a3f257a799c2f63d	2021-10-12	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4324151

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5150939

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Lucerastat (HMDB0254192)

MOL for HMDB0254192 (Lucerastat)

3D MOL for HMDB0254192 (Lucerastat)

3D SDF for HMDB0254192 (Lucerastat)

3D-SDF for HMDB0254192 (Lucerastat)

PDB for HMDB0254192 (Lucerastat)

3D PDB for HMDB0254192 (Lucerastat)

SMILES for HMDB0254192 (Lucerastat)

INCHI for HMDB0254192 (Lucerastat)

Structure for HMDB0254192 (Lucerastat)

3D Structure for HMDB0254192 (Lucerastat)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra

NMR Spectra