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Showing metabocard for PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) (HMDB0274648)

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Record Information
Version5.0
StatusPredicted
Creation Date2021-09-13 01:57:03 UTC
Update Date2022-11-30 19:59:51 UTC
HMDB IDHMDB0274648
Secondary Accession NumbersNone
Metabolite Identification
Common NamePGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0)
DescriptionPGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) is an oxidized phosphoglycerophosphate (PGP). Oxidized phosphoglycerophosphates are glycerophospholipids in which a phosphoglycerol moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized phosphoglycerophosphates belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, phosphoglycerophosphates can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0), in particular, consists of one chain of one Lipoxin A5 at the C-1 position and one chain of 18-methyleicosanoyl at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized PGPs can be synthesized via three different routes. In one route, the oxidized PGP is synthetized de novo following the same mechanisms as for PGPs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the PGP backbone, mainely through the action of LOX (PMID: 33329396 ).
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0)
  Mrv1652309132103572D          

 67 66  0  0  1  0            999 V2000
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   -0.9591    0.3596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2447    0.7720    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6571    1.4866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1679    0.0575    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4699    1.1846    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1844    0.7720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8989    1.1846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6134    0.7720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7177    0.3983    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0032    0.8108    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.4156    1.5255    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5905    0.0962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2885    1.2234    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3114    1.8990    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
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 66 67  1  0  0  0  0
M  END
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3D MOL for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

HMDB0274648
     RDKit          3D
PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0)
149148  0  0  0  0  0  0  0  0999 V2000
   12.1191    5.7805    5.4462 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6922    7.1799    5.0033 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2281    7.3137    4.9999 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4394    7.5928    3.9823 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9750    7.8189    2.6417 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6230    9.1872    2.0876 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.2128    9.2295    0.8001 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1748    9.3814    1.8614 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3786    8.3568    1.7418 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9551    8.5389    1.5191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1387    7.4764    1.3976 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7328    7.6564    1.1765 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9292    6.6180    1.0657 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4049    5.2901    1.1554 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6746    4.2258    1.0778 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2239    4.2587    0.8847 C   0  0  2  0  0  0  0  0  0  0  0  0
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    0.6051    2.9500    1.3521 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9685    2.7628    2.6718 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8278    2.7435    1.0556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7659    3.7481    1.6198 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2135    3.3768    1.3617 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.8518   -1.9976    1.5143 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7000   -1.5740   -1.3707 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0039   -0.6364   -3.2654 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3997    0.2229   -5.2256 P   0  0  0  0  0  5  0  0  0  0  0  0
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    3.3657   -0.3001   -6.8413 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5783   -0.6511   -4.3759 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.4234   -2.1530    2.1759 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0218   -3.5031    2.6373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2105   -4.6551    2.1364 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.3496   -5.8992    0.1407 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5213   -6.1083   -1.3621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5119   -7.1040   -1.8411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6198   -7.4898   -3.2854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4665   -8.3206   -3.6912 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1297   -7.8164   -3.9153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2832   -7.0046   -3.0986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4135   -5.5797   -2.7748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3149   -4.5814   -3.8777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3557   -4.5339   -4.9118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7156   -4.1302   -4.4035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7917   -2.7197   -3.8643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4271   -1.6606   -4.8506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3142   -1.6962   -6.0847 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7967   -0.3242   -4.1674 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0686   -0.1301   -2.8833 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1745    5.5837    5.1805 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4684    5.0117    5.0255 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0388    5.6586    6.5592 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1320    7.8476    5.8090 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2253    7.4586    4.0985 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7551    7.1529    6.0127 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3601    7.6468    4.2048 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7120    7.0045    1.9081 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0777    7.7989    2.6693 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0862    9.9927    2.6638 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6422    8.3931    0.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8357   10.4102    1.8050 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0)
  Mrv1652309132103572D          

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 60 61  1  0  0  0  0
 61 62  1  0  0  0  0
 62 63  1  0  0  0  0
 63 64  1  0  0  0  0
 64 65  1  0  0  0  0
 64 66  1  0  0  0  0
 66 67  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0274648

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC[C@H](O)[C@@H](O)\C=C/C=C\C=C\C=C\[C@H](O)C\C=C/CC)OC(=O)CCCCCCCCCCCCCCCCC(C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C47H84O16P2/c1-4-6-23-30-41(48)31-25-20-17-18-21-26-32-44(50)45(51)33-28-35-46(52)59-38-43(39-62-65(57,58)61-37-42(49)36-60-64(54,55)56)63-47(53)34-27-22-16-14-12-10-8-7-9-11-13-15-19-24-29-40(3)5-2/h6,17-18,20-21,23,25-26,31-32,40-45,48-51H,4-5,7-16,19,22,24,27-30,33-39H2,1-3H3,(H,57,58)(H2,54,55,56)/b20-17+,21-18-,23-6-,31-25+,32-26-/t40?,41-,42+,43-,44+,45+/m1/s1

> <INCHI_KEY>
IJOFYEGFZLSDCQ-ZQDMNYJUSA-N

> <FORMULA>
C47H84O16P2

> <MOLECULAR_WEIGHT>
967.121

> <EXACT_MASS>
966.523460621

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
149

> <JCHEM_AVERAGE_POLARIZABILITY>
108.97828529669556

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S)-2-hydroxy-3-({hydroxy[(2R)-2-[(18-methylicosanoyl)oxy]-3-{[(5S,6S,7Z,9Z,11E,13E,15R,17Z)-5,6,15-trihydroxyicosa-7,9,11,13,17-pentaenoyl]oxy}propoxy]phosphoryl}oxy)propoxy]phosphonic acid

> <ALOGPS_LOGP>
6.29

> <JCHEM_LOGP>
9.31091988

> <ALOGPS_LOGS>
-6.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
2.040303597909083

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3552538523619155

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6091835616050383

> <JCHEM_POLAR_SURFACE_AREA>
256.03999999999996

> <JCHEM_REFRACTIVITY>
257.51390000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
45

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.44e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-hydroxy-3-{[hydroxy((2R)-2-[(18-methylicosanoyl)oxy]-3-{[(5S,6S,7Z,9Z,11E,13E,15R,17Z)-5,6,15-trihydroxyicosa-7,9,11,13,17-pentaenoyl]oxy}propoxy)phosphoryl]oxy}propoxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

HMDB0274648
     RDKit          3D
PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0)
149148  0  0  0  0  0  0  0  0999 V2000
   12.1191    5.7805    5.4462 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6922    7.1799    5.0033 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2281    7.3137    4.9999 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4394    7.5928    3.9823 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9750    7.8189    2.6417 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6230    9.1872    2.0876 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.2128    9.2295    0.8001 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1748    9.3814    1.8614 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3786    8.3568    1.7418 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9551    8.5389    1.5191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1387    7.4764    1.3976 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7328    7.6564    1.1765 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9292    6.6180    1.0657 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4049    5.2901    1.1554 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6746    4.2258    1.0778 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2239    4.2587    0.8847 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6839    5.2188    1.7790 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6051    2.9500    1.3521 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9685    2.7628    2.6718 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8278    2.7435    1.0556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7659    3.7481    1.6198 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2135    3.3768    1.3617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5609    2.1004    2.0720 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6450    1.5258    1.8779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6877    1.5482    2.9539 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7423    0.4186    3.7392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9370   -0.8998    3.0642 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7800   -1.1613    2.1342 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8182   -2.4563    1.6109 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4560   -2.6260    0.6170 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.2550   -4.0920    0.3104 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8518   -1.9976    1.5143 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5629   -1.7495   -0.8050 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7000   -1.5740   -1.3707 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6244   -0.7827   -2.6452 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0982    0.4854   -2.4491 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0039   -0.6364   -3.2654 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9049    0.0318   -4.4928 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3997    0.2229   -5.2256 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.8497    1.6711   -5.1907 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3657   -0.3001   -6.8413 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5783   -0.6511   -4.3759 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2068   -1.0072    2.4150 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0960   -1.9809    2.7819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7179   -2.7772    3.7161 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4234   -2.1530    2.1759 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0218   -3.5031    2.6373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2105   -4.6551    2.1364 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2733   -4.8007    0.6286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3496   -5.8992    0.1407 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5213   -6.1083   -1.3621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5119   -7.1040   -1.8411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6198   -7.4898   -3.2854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4665   -8.3206   -3.6912 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1297   -7.8164   -3.9153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2832   -7.0046   -3.0986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4135   -5.5797   -2.7748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3149   -4.5814   -3.8777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3557   -4.5339   -4.9118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7156   -4.1302   -4.4035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7917   -2.7197   -3.8643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4271   -1.6606   -4.8506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3142   -1.6962   -6.0847 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7967   -0.3242   -4.1674 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0686   -0.1301   -2.8833 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1745    5.5837    5.1805 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4684    5.0117    5.0255 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0388    5.6586    6.5592 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1320    7.8476    5.8090 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2253    7.4586    4.0985 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7551    7.1529    6.0127 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3601    7.6468    4.2048 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7120    7.0045    1.9081 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0777    7.7989    2.6693 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0862    9.9927    2.6638 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6422    8.3931    0.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8357   10.4102    1.8050 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7757    7.3611    1.8072 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4953    9.5059    1.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6452    6.5290    1.4822 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3352    8.6884    1.1003 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8904    6.8404    0.8895 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5014    5.1273    1.3052 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1131    3.2099    1.1508 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8592    4.5072   -0.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6850    4.8264    2.7017 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1704    2.1648    0.7403 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9254    2.9862    2.7664 H   0  0  0  0  0  0  0  0  0  0  0  0
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 30 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 35 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  2  0
 39 41  1  0
 39 42  1  0
 27 43  1  0
 43 44  1  0
 44 45  2  0
 44 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  1  0
 50 51  1  0
 51 52  1  0
 52 53  1  0
 53 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  1  0
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 58 59  1  0
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 61 62  1  0
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  3 71  1  0
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  5 73  1  0
  5 74  1  0
  6 75  1  1
  7 76  1  0
  8 77  1  0
  9 78  1  0
 10 79  1  0
 11 80  1  0
 12 81  1  0
 13 82  1  0
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 16 85  1  6
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 18 87  1  6
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 20 89  1  0
 20 90  1  0
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 65148  1  0
 65149  1  0
M  END
Download

PDB for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0)   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  O   UNK     0      -7.097   0.673   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      -1.790   0.671   0.000  0.00  0.00           O+0
HETATM    3  P   UNK     0      -0.457   1.441   0.000  0.00  0.00           P+0
HETATM    4  O   UNK     0      -1.227   2.775   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       0.313   0.107   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       0.877   2.211   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.211   1.441   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.545   2.211   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.878   1.441   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       8.806   0.743   0.000  0.00  0.00           O+0
HETATM   11  P   UNK     0       7.473   1.513   0.000  0.00  0.00           P+0
HETATM   12  O   UNK     0       8.242   2.848   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       6.702   0.180   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       6.138   2.284   0.000  0.00  0.00           O+0
HETATM   15  H   UNK     0       4.315   3.545   0.000  0.00  0.00           H+0
HETATM   16  O   UNK     0       2.775   3.545   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -5.781   1.440   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -4.447   0.670   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.113   1.440   0.000  0.00  0.00           C+0
HETATM   20  H   UNK     0      -3.677  -0.663   0.000  0.00  0.00           H+0
HETATM   21  O   UNK     0      -5.217  -0.663   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -8.423   1.436   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -8.423   2.876   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -9.756   0.665   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -11.089   1.436   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -12.422   0.665   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -13.755   1.436   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0     -13.755   2.876   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0     -15.088   0.665   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0     -15.088  -0.775   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0     -16.421   1.436   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -17.961   1.436   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -19.294   0.665   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0     -20.834   0.665   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -22.167   1.436   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -23.500   0.665   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -24.833   1.436   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -26.166   0.665   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -27.499   1.436   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0     -27.499   2.876   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0     -28.832   0.665   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -30.165   1.436   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -31.705   1.436   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -33.038   0.665   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -34.371   1.436   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -6.551  -1.433   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      -6.551  -2.873   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      -7.884  -0.662   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -9.217  -1.433   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0     -10.550  -0.662   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0     -11.883  -1.433   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0     -13.216  -0.662   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0     -14.549  -1.433   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0     -15.882  -0.662   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -17.215  -1.433   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0     -18.548  -0.662   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0     -19.881  -1.433   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0     -21.214  -0.662   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0     -22.547  -1.433   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0     -23.880  -0.662   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0     -25.213  -1.433   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0     -26.546  -0.662   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0     -27.879  -1.433   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0     -29.212  -0.662   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0     -30.545  -1.433   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0     -30.545   0.106   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0     -31.878  -0.665   0.000  0.00  0.00           C+0
CONECT    1   22   17                                                       
CONECT    2   19    3                                                       
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7   16   15    9                                             
CONECT    9    8   14                                                       
CONECT   10   11                                                            
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    9   11                                                       
CONECT   15    8                                                            
CONECT   16    8                                                            
CONECT   17    1   18                                                       
CONECT   18   17   20   21   19                                             
CONECT   19    2   18                                                       
CONECT   20   18                                                            
CONECT   21   18   46                                                       
CONECT   22    1   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44                                                            
CONECT   46   21   47   48                                                  
CONECT   47   46                                                            
CONECT   48   46   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64                                                       
CONECT   64   63   65   66                                                  
CONECT   65   64                                                            
CONECT   66   64   67                                                       
CONECT   67   66                                                            
MASTER        0    0    0    0    0    0    0    0   67    0  132    0
END
Download

3D PDB for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

COMPND    HMDB0274648
HETATM    1  C1  UNL     1      12.119   5.780   5.446  1.00  0.00           C  
HETATM    2  C2  UNL     1      11.692   7.180   5.003  1.00  0.00           C  
HETATM    3  C3  UNL     1      10.228   7.314   5.000  1.00  0.00           C  
HETATM    4  C4  UNL     1       9.439   7.593   3.982  1.00  0.00           C  
HETATM    5  C5  UNL     1       9.975   7.819   2.642  1.00  0.00           C  
HETATM    6  C6  UNL     1       9.623   9.187   2.088  1.00  0.00           C  
HETATM    7  O1  UNL     1      10.213   9.230   0.800  1.00  0.00           O  
HETATM    8  C7  UNL     1       8.175   9.381   1.861  1.00  0.00           C  
HETATM    9  C8  UNL     1       7.379   8.357   1.742  1.00  0.00           C  
HETATM   10  C9  UNL     1       5.955   8.539   1.519  1.00  0.00           C  
HETATM   11  C10 UNL     1       5.139   7.476   1.398  1.00  0.00           C  
HETATM   12  C11 UNL     1       3.733   7.656   1.177  1.00  0.00           C  
HETATM   13  C12 UNL     1       2.929   6.618   1.066  1.00  0.00           C  
HETATM   14  C13 UNL     1       3.405   5.290   1.155  1.00  0.00           C  
HETATM   15  C14 UNL     1       2.675   4.226   1.078  1.00  0.00           C  
HETATM   16  C15 UNL     1       1.224   4.259   0.885  1.00  0.00           C  
HETATM   17  O2  UNL     1       0.684   5.219   1.779  1.00  0.00           O  
HETATM   18  C16 UNL     1       0.605   2.950   1.352  1.00  0.00           C  
HETATM   19  O3  UNL     1       0.969   2.763   2.672  1.00  0.00           O  
HETATM   20  C17 UNL     1      -0.828   2.743   1.056  1.00  0.00           C  
HETATM   21  C18 UNL     1      -1.766   3.748   1.620  1.00  0.00           C  
HETATM   22  C19 UNL     1      -3.213   3.377   1.362  1.00  0.00           C  
HETATM   23  C20 UNL     1      -3.561   2.100   2.072  1.00  0.00           C  
HETATM   24  O4  UNL     1      -4.645   1.526   1.878  1.00  0.00           O  
HETATM   25  O5  UNL     1      -2.688   1.548   2.954  1.00  0.00           O  
HETATM   26  C21 UNL     1      -2.742   0.419   3.739  1.00  0.00           C  
HETATM   27  C22 UNL     1      -2.937  -0.900   3.064  1.00  0.00           C  
HETATM   28  C23 UNL     1      -1.780  -1.161   2.134  1.00  0.00           C  
HETATM   29  O6  UNL     1      -1.818  -2.456   1.611  1.00  0.00           O  
HETATM   30  P1  UNL     1      -0.456  -2.626   0.617  1.00  0.00           P  
HETATM   31  O7  UNL     1      -0.255  -4.092   0.310  1.00  0.00           O  
HETATM   32  O8  UNL     1       0.852  -1.998   1.514  1.00  0.00           O  
HETATM   33  O9  UNL     1      -0.563  -1.750  -0.805  1.00  0.00           O  
HETATM   34  C24 UNL     1       0.700  -1.574  -1.371  1.00  0.00           C  
HETATM   35  C25 UNL     1       0.624  -0.783  -2.645  1.00  0.00           C  
HETATM   36  O10 UNL     1       0.098   0.485  -2.449  1.00  0.00           O  
HETATM   37  C26 UNL     1       2.004  -0.636  -3.265  1.00  0.00           C  
HETATM   38  O11 UNL     1       1.905   0.032  -4.493  1.00  0.00           O  
HETATM   39  P2  UNL     1       3.400   0.223  -5.226  1.00  0.00           P  
HETATM   40  O12 UNL     1       3.850   1.671  -5.191  1.00  0.00           O  
HETATM   41  O13 UNL     1       3.366  -0.300  -6.841  1.00  0.00           O  
HETATM   42  O14 UNL     1       4.578  -0.651  -4.376  1.00  0.00           O  
HETATM   43  O15 UNL     1      -4.207  -1.007   2.415  1.00  0.00           O  
HETATM   44  C27 UNL     1      -5.096  -1.981   2.782  1.00  0.00           C  
HETATM   45  O16 UNL     1      -4.718  -2.777   3.716  1.00  0.00           O  
HETATM   46  C28 UNL     1      -6.423  -2.153   2.176  1.00  0.00           C  
HETATM   47  C29 UNL     1      -7.022  -3.503   2.637  1.00  0.00           C  
HETATM   48  C30 UNL     1      -6.210  -4.655   2.136  1.00  0.00           C  
HETATM   49  C31 UNL     1      -6.273  -4.801   0.629  1.00  0.00           C  
HETATM   50  C32 UNL     1      -5.350  -5.899   0.141  1.00  0.00           C  
HETATM   51  C33 UNL     1      -5.521  -6.108  -1.362  1.00  0.00           C  
HETATM   52  C34 UNL     1      -4.512  -7.104  -1.841  1.00  0.00           C  
HETATM   53  C35 UNL     1      -4.620  -7.490  -3.285  1.00  0.00           C  
HETATM   54  C36 UNL     1      -3.466  -8.321  -3.691  1.00  0.00           C  
HETATM   55  C37 UNL     1      -2.130  -7.816  -3.915  1.00  0.00           C  
HETATM   56  C38 UNL     1      -1.283  -7.005  -3.099  1.00  0.00           C  
HETATM   57  C39 UNL     1      -1.413  -5.580  -2.775  1.00  0.00           C  
HETATM   58  C40 UNL     1      -1.315  -4.581  -3.878  1.00  0.00           C  
HETATM   59  C41 UNL     1      -2.356  -4.534  -4.912  1.00  0.00           C  
HETATM   60  C42 UNL     1      -3.716  -4.130  -4.403  1.00  0.00           C  
HETATM   61  C43 UNL     1      -3.792  -2.720  -3.864  1.00  0.00           C  
HETATM   62  C44 UNL     1      -3.427  -1.661  -4.851  1.00  0.00           C  
HETATM   63  C45 UNL     1      -4.314  -1.696  -6.085  1.00  0.00           C  
HETATM   64  C46 UNL     1      -3.797  -0.324  -4.167  1.00  0.00           C  
HETATM   65  C47 UNL     1      -3.069  -0.130  -2.883  1.00  0.00           C  
HETATM   66  H1  UNL     1      13.175   5.584   5.181  1.00  0.00           H  
HETATM   67  H2  UNL     1      11.468   5.012   5.026  1.00  0.00           H  
HETATM   68  H3  UNL     1      12.039   5.659   6.559  1.00  0.00           H  
HETATM   69  H4  UNL     1      12.132   7.848   5.809  1.00  0.00           H  
HETATM   70  H5  UNL     1      12.225   7.459   4.099  1.00  0.00           H  
HETATM   71  H6  UNL     1       9.755   7.153   6.013  1.00  0.00           H  
HETATM   72  H7  UNL     1       8.360   7.647   4.205  1.00  0.00           H  
HETATM   73  H8  UNL     1       9.712   7.004   1.908  1.00  0.00           H  
HETATM   74  H9  UNL     1      11.078   7.799   2.669  1.00  0.00           H  
HETATM   75  H10 UNL     1      10.086   9.993   2.664  1.00  0.00           H  
HETATM   76  H11 UNL     1      10.642   8.393   0.549  1.00  0.00           H  
HETATM   77  H12 UNL     1       7.836  10.410   1.805  1.00  0.00           H  
HETATM   78  H13 UNL     1       7.776   7.361   1.807  1.00  0.00           H  
HETATM   79  H14 UNL     1       5.495   9.506   1.445  1.00  0.00           H  
HETATM   80  H15 UNL     1       5.645   6.529   1.482  1.00  0.00           H  
HETATM   81  H16 UNL     1       3.335   8.688   1.100  1.00  0.00           H  
HETATM   82  H17 UNL     1       1.890   6.840   0.889  1.00  0.00           H  
HETATM   83  H18 UNL     1       4.501   5.127   1.305  1.00  0.00           H  
HETATM   84  H19 UNL     1       3.113   3.210   1.151  1.00  0.00           H  
HETATM   85  H20 UNL     1       0.859   4.507  -0.106  1.00  0.00           H  
HETATM   86  H21 UNL     1       0.685   4.826   2.702  1.00  0.00           H  
HETATM   87  H22 UNL     1       1.170   2.165   0.740  1.00  0.00           H  
HETATM   88  H23 UNL     1       1.925   2.986   2.766  1.00  0.00           H  
HETATM   89  H24 UNL     1      -1.097   1.742   1.435  1.00  0.00           H  
HETATM   90  H25 UNL     1      -0.942   2.655  -0.069  1.00  0.00           H  
HETATM   91  H26 UNL     1      -1.652   4.763   1.148  1.00  0.00           H  
HETATM   92  H27 UNL     1      -1.614   3.801   2.717  1.00  0.00           H  
HETATM   93  H28 UNL     1      -3.819   4.238   1.746  1.00  0.00           H  
HETATM   94  H29 UNL     1      -3.422   3.304   0.280  1.00  0.00           H  
HETATM   95  H30 UNL     1      -1.817   0.400   4.386  1.00  0.00           H  
HETATM   96  H31 UNL     1      -3.564   0.532   4.534  1.00  0.00           H  
HETATM   97  H32 UNL     1      -2.914  -1.692   3.868  1.00  0.00           H  
HETATM   98  H33 UNL     1      -0.850  -1.068   2.718  1.00  0.00           H  
HETATM   99  H34 UNL     1      -1.815  -0.494   1.249  1.00  0.00           H  
HETATM  100  H35 UNL     1       1.647  -2.576   1.410  1.00  0.00           H  
HETATM  101  H36 UNL     1       1.422  -1.104  -0.658  1.00  0.00           H  
HETATM  102  H37 UNL     1       1.112  -2.582  -1.587  1.00  0.00           H  
HETATM  103  H38 UNL     1       0.014  -1.303  -3.422  1.00  0.00           H  
HETATM  104  H39 UNL     1      -0.131   0.696  -1.516  1.00  0.00           H  
HETATM  105  H40 UNL     1       2.640  -0.041  -2.597  1.00  0.00           H  
HETATM  106  H41 UNL     1       2.413  -1.653  -3.382  1.00  0.00           H  
HETATM  107  H42 UNL     1       3.921  -1.107  -6.965  1.00  0.00           H  
HETATM  108  H43 UNL     1       5.452  -0.552  -4.800  1.00  0.00           H  
HETATM  109  H44 UNL     1      -6.353  -2.183   1.088  1.00  0.00           H  
HETATM  110  H45 UNL     1      -7.168  -1.395   2.513  1.00  0.00           H  
HETATM  111  H46 UNL     1      -7.191  -3.523   3.720  1.00  0.00           H  
HETATM  112  H47 UNL     1      -8.028  -3.539   2.153  1.00  0.00           H  
HETATM  113  H48 UNL     1      -6.599  -5.593   2.598  1.00  0.00           H  
HETATM  114  H49 UNL     1      -5.157  -4.532   2.399  1.00  0.00           H  
HETATM  115  H50 UNL     1      -7.320  -5.160   0.400  1.00  0.00           H  
HETATM  116  H51 UNL     1      -6.105  -3.858   0.100  1.00  0.00           H  
HETATM  117  H52 UNL     1      -5.474  -6.847   0.691  1.00  0.00           H  
HETATM  118  H53 UNL     1      -4.273  -5.595   0.283  1.00  0.00           H  
HETATM  119  H54 UNL     1      -5.564  -5.165  -1.895  1.00  0.00           H  
HETATM  120  H55 UNL     1      -6.559  -6.554  -1.453  1.00  0.00           H  
HETATM  121  H56 UNL     1      -4.788  -8.068  -1.212  1.00  0.00           H  
HETATM  122  H57 UNL     1      -3.519  -6.903  -1.452  1.00  0.00           H  
HETATM  123  H58 UNL     1      -5.570  -8.160  -3.306  1.00  0.00           H  
HETATM  124  H59 UNL     1      -4.899  -6.704  -3.984  1.00  0.00           H  
HETATM  125  H60 UNL     1      -3.823  -8.918  -4.618  1.00  0.00           H  
HETATM  126  H61 UNL     1      -3.362  -9.213  -2.953  1.00  0.00           H  
HETATM  127  H62 UNL     1      -2.063  -7.539  -5.041  1.00  0.00           H  
HETATM  128  H63 UNL     1      -1.493  -8.833  -4.040  1.00  0.00           H  
HETATM  129  H64 UNL     1      -0.196  -7.117  -3.536  1.00  0.00           H  
HETATM  130  H65 UNL     1      -1.123  -7.561  -2.097  1.00  0.00           H  
HETATM  131  H66 UNL     1      -2.253  -5.269  -2.126  1.00  0.00           H  
HETATM  132  H67 UNL     1      -0.503  -5.337  -2.103  1.00  0.00           H  
HETATM  133  H68 UNL     1      -1.200  -3.533  -3.471  1.00  0.00           H  
HETATM  134  H69 UNL     1      -0.326  -4.767  -4.374  1.00  0.00           H  
HETATM  135  H70 UNL     1      -2.498  -5.384  -5.566  1.00  0.00           H  
HETATM  136  H71 UNL     1      -2.046  -3.692  -5.627  1.00  0.00           H  
HETATM  137  H72 UNL     1      -4.553  -4.323  -5.059  1.00  0.00           H  
HETATM  138  H73 UNL     1      -3.868  -4.768  -3.467  1.00  0.00           H  
HETATM  139  H74 UNL     1      -3.124  -2.654  -2.999  1.00  0.00           H  
HETATM  140  H75 UNL     1      -4.832  -2.548  -3.539  1.00  0.00           H  
HETATM  141  H76 UNL     1      -2.352  -1.585  -5.082  1.00  0.00           H  
HETATM  142  H77 UNL     1      -4.612  -0.687  -6.430  1.00  0.00           H  
HETATM  143  H78 UNL     1      -5.245  -2.231  -5.838  1.00  0.00           H  
HETATM  144  H79 UNL     1      -3.815  -2.180  -6.948  1.00  0.00           H  
HETATM  145  H80 UNL     1      -4.905  -0.309  -4.073  1.00  0.00           H  
HETATM  146  H81 UNL     1      -3.483   0.452  -4.913  1.00  0.00           H  
HETATM  147  H82 UNL     1      -2.622   0.896  -2.881  1.00  0.00           H  
HETATM  148  H83 UNL     1      -2.247  -0.852  -2.797  1.00  0.00           H  
HETATM  149  H84 UNL     1      -3.742  -0.158  -1.993  1.00  0.00           H  
CONECT    1    2   66   67   68
CONECT    2    3   69   70
CONECT    3    4    4   71
CONECT    4    5   72
CONECT    5    6   73   74
CONECT    6    7    8   75
CONECT    7   76
CONECT    8    9    9   77
CONECT    9   10   78
CONECT   10   11   11   79
CONECT   11   12   80
CONECT   12   13   13   81
CONECT   13   14   82
CONECT   14   15   15   83
CONECT   15   16   84
CONECT   16   17   18   85
CONECT   17   86
CONECT   18   19   20   87
CONECT   19   88
CONECT   20   21   89   90
CONECT   21   22   91   92
CONECT   22   23   93   94
CONECT   23   24   24   25
CONECT   25   26
CONECT   26   27   95   96
CONECT   27   28   43   97
CONECT   28   29   98   99
CONECT   29   30
CONECT   30   31   31   32   33
CONECT   32  100
CONECT   33   34
CONECT   34   35  101  102
CONECT   35   36   37  103
CONECT   36  104
CONECT   37   38  105  106
CONECT   38   39
CONECT   39   40   40   41   42
CONECT   41  107
CONECT   42  108
CONECT   43   44
CONECT   44   45   45   46
CONECT   46   47  109  110
CONECT   47   48  111  112
CONECT   48   49  113  114
CONECT   49   50  115  116
CONECT   50   51  117  118
CONECT   51   52  119  120
CONECT   52   53  121  122
CONECT   53   54  123  124
CONECT   54   55  125  126
CONECT   55   56  127  128
CONECT   56   57  129  130
CONECT   57   58  131  132
CONECT   58   59  133  134
CONECT   59   60  135  136
CONECT   60   61  137  138
CONECT   61   62  139  140
CONECT   62   63   64  141
CONECT   63  142  143  144
CONECT   64   65  145  146
CONECT   65  147  148  149
END
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SMILES for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC[C@H](O)[C@@H](O)\C=C/C=C\C=C\C=C\[C@H](O)C\C=C/CC)OC(=O)CCCCCCCCCCCCCCCCC(C)CC
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INCHI for HMDB0274648 (PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0))

InChI=1S/C47H84O16P2/c1-4-6-23-30-41(48)31-25-20-17-18-21-26-32-44(50)45(51)33-28-35-46(52)59-38-43(39-62-65(57,58)61-37-42(49)36-60-64(54,55)56)63-47(53)34-27-22-16-14-12-10-8-7-9-11-13-15-19-24-29-40(3)5-2/h6,17-18,20-21,23,25-26,31-32,40-45,48-51H,4-5,7-16,19,22,24,27-30,33-39H2,1-3H3,(H,57,58)(H2,54,55,56)/b20-17+,21-18-,23-6-,31-25+,32-26-/t40?,41-,42+,43-,44+,45+/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
[(2S)-2-Hydroxy-3-({hydroxy[(2R)-2-[(18-methylicosanoyl)oxy]-3-{[(5S,6S,7Z,11E,13E,15R,17Z)-5,6,15-trihydroxyicosa-7,9,11,13,17-pentaenoyl]oxy}propoxy]phosphoryl}oxy)propoxy]phosphonateGenerator
Chemical FormulaC47H84O16P2
Average Molecular Weight967.121
Monoisotopic Molecular Weight966.523460621
IUPAC Name[(2S)-2-hydroxy-3-({hydroxy[(2R)-2-[(18-methylicosanoyl)oxy]-3-{[(5S,6S,7Z,9Z,11E,13E,15R,17Z)-5,6,15-trihydroxyicosa-7,9,11,13,17-pentaenoyl]oxy}propoxy]phosphoryl}oxy)propoxy]phosphonic acid
Traditional Name(2S)-2-hydroxy-3-{[hydroxy((2R)-2-[(18-methylicosanoyl)oxy]-3-{[(5S,6S,7Z,9Z,11E,13E,15R,17Z)-5,6,15-trihydroxyicosa-7,9,11,13,17-pentaenoyl]oxy}propoxy)phosphoryl]oxy}propoxyphosphonic acid
CAS Registry NumberNot Available
SMILES
[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC[C@H](O)[C@@H](O)\C=C/C=C\C=C\C=C\[C@H](O)C\C=C/CC)OC(=O)CCCCCCCCCCCCCCCCC(C)CC
InChI Identifier
InChI=1S/C47H84O16P2/c1-4-6-23-30-41(48)31-25-20-17-18-21-26-32-44(50)45(51)33-28-35-46(52)59-38-43(39-62-65(57,58)61-37-42(49)36-60-64(54,55)56)63-47(53)34-27-22-16-14-12-10-8-7-9-11-13-15-19-24-29-40(3)5-2/h6,17-18,20-21,23,25-26,31-32,40-45,48-51H,4-5,7-16,19,22,24,27-30,33-39H2,1-3H3,(H,57,58)(H2,54,55,56)/b20-17+,21-18-,23-6-,31-25+,32-26-/t40?,41-,42+,43-,44+,45+/m1/s1
InChI KeyIJOFYEGFZLSDCQ-ZQDMNYJUSA-N
Chemical Taxonomy
ClassificationNot classified
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP6.29ALOGPS
logP9.31ChemAxon
logS-6.2ALOGPS
pKa (Strongest Acidic)1.36ChemAxon
pKa (Strongest Basic)-1.6ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area256.04 ŲChemAxon
Rotatable Bond Count45ChemAxon
Refractivity257.51 m³·mol⁻¹ChemAxon
Polarizability108.98 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+312.27632859911
AllCCS[M+H-H2O]+312.52332859911
AllCCS[M+Na]+311.93432859911
AllCCS[M+NH4]+312.01432859911
AllCCS[M-H]-314.68832859911
AllCCS[M+Na-2H]-321.6332859911
AllCCS[M+HCOO]-329.18732859911
DeepCCS[M+H]+286.49130932474
DeepCCS[M-H]-284.59530932474
DeepCCS[M-2H]-318.37630932474
DeepCCS[M+Na]+292.39630932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) 10V, Positive-QTOFsplash10-00l2-0000001149-19282056ea01c7f14d452021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) 20V, Positive-QTOFsplash10-0uxs-1400002491-06585b068b5fc42450002021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) 40V, Positive-QTOFsplash10-0f6t-3795025200-ac317950f343bd8833b62021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) 10V, Negative-QTOFsplash10-014i-0010000009-57e72c66dad934fde7db2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) 20V, Negative-QTOFsplash10-03ea-1129002104-59e5a125a0eedde005ab2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/a-21:0) 40V, Negative-QTOFsplash10-0fi1-2092206000-bf306c657ed03ce0e4c12021-10-19Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]