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Showing metabocard for PI(PGF1alpha/16:1(9Z)) (HMDB0276229)

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Record Information
Version5.0
StatusPredicted
Creation Date2021-09-13 05:13:20 UTC
Update Date2022-11-30 20:00:39 UTC
HMDB IDHMDB0276229
Secondary Accession NumbersNone
Metabolite Identification
Common NamePI(PGF1alpha/16:1(9Z))
DescriptionPI(PGF1alpha/16:1(9Z)) is an oxidized phosphatidylinositol (PI). Phosphatidylinositols are important lipids, both as a key membrane constituent and as a participant in essential metabolic processes, both directly and via a number of metabolites. Phosphatidylinositols are acidic (anionic) phospholipids that consist of a phosphatidic acid backbone, linked via the phosphate group to inositol (hexahydroxycyclohexane). Phosphatidylinositols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PI(PGF1alpha/16:1(9Z)), in particular, consists of one chain of Prostaglandin F1alpha at the C-1 position and one chain of 9Z-hexadecenoyl at the C-2 position. The inositol group that is part of every phosphatidylinositol lipid is covalently linked to the phosphate group that acts as a bridge to the lipid tail. In most organisms, the stereochemical form of this inositol is myo-D-inositol (with one axial hydroxyl in position 2 with the remainder equatorial), although other forms can be found in certain plant phosphatidylinositols. Phosphatidylinositol is especially abundant in brain tissue, where it can amount to 10% of the phospholipids, but it is present in all tissues and cell types. There is usually less of it than of phosphatidylcholine, phosphatidylethanolamine and phosphatidylserine. In animal tissues, phosphatidylinositol is the primary source of the arachidonic acid required for biosynthesis of eicosanoids, including prostaglandins, via the action of the enzyme phospholipase A2. Phosphatidylinositol can be phosphorylated by a number of different kinases that place the phosphate moiety on positions 4 and 5 of the inositol ring, although position 3 can also be phosphorylated by a specific kinase. Seven different isomers are known, but the most important in both quantitative and biological terms are phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate. Phosphatidylinositol and the phosphatidylinositol phosphates are the main source of diacylglycerols that serve as signaling molecules, via the action of phospholipase C enzymes. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PIs composed exclusively of non-phosphorylated inositol exhibit a net charge of -1 at physiological pH. Molecules with phosphorylated inositol (such as PIP, PIP2, PIP3, etc.) are termed polyphosphoinositides. The polyphosphoinositides are important intracellular transducers of signals emanating from the plasma membrane. The synthesis of PI involves CDP-activated 1,2-diacylglycerol condensation with myo-inositol.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))


  Mrv1652309132107132D          

 62 63  0  0  1  0            999 V2000
    1.2759    4.5231    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5738    4.1873    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6917    5.0038    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1053    5.6519    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5047    5.1440    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6545    6.0079    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8893    4.4141    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4897    4.0868    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6299    3.2738    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    3.5576    3.6517    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3452    4.1258    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4040    2.9887    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.5508    1.8693    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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 61 62  1  6  0  0  0
M  END
Download

3D MOL for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))

HMDB0276229
     RDKit          3D
PI(PGF1alpha/16:1(9Z))
143144  0  0  0  0  0  0  0  0999 V2000
   13.1287   -2.5148    1.3790 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7691   -3.1650    1.2419 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7122   -2.2802    1.8763 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7091   -0.9357    1.1870 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3935   -1.1023   -0.3020 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4164    0.2892   -0.9222 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1136    0.1513   -2.3533 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0918    0.7194   -2.9187 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1220    1.5573   -2.2126 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1739    2.9333   -2.8462 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2222    3.8450   -2.1383 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8181    3.3400   -2.2652 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8851    4.2931   -1.5639 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2367    4.4079   -0.1154 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1519    3.0846    0.5717 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7921    2.5259    0.5039 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7940    3.1047    0.0386 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5624    1.2348    0.9951 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2703    0.6553    0.9534 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7234    0.3134    2.3164 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6975   -1.0429    2.6131 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7877   -1.7384    3.3801 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0533   -2.2959    4.4912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6177   -1.8737    2.9162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6005   -2.0861    4.0450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8337   -1.2691    3.8868 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1254   -2.0641    3.9859 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.1036    2.8646   -0.2317 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8542    3.4711    0.1149 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8535    3.7582   -1.1309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1579    3.3628   -1.6610 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3209    3.0940   -0.8174 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2967    1.9860    0.1578 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7107    1.9674    0.8210 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9516   -0.2040   -1.2893 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2963   -0.5113    0.0228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7151   -1.8627   -1.0426 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4666   -2.5020   -0.9628 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8254   -2.9307   -1.1271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1921   -4.0468   -1.7328 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3094   -3.2540    0.2215 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4216   -4.2677    0.6844 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.2734   -1.8565    0.4737 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.2210   -1.8906    2.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9219   -3.2958    1.3528 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7580   -4.1302    1.8257 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5233   -3.4140    0.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7202   -2.7330    1.8023 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0025   -2.0925    2.9345 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9210   -0.2809    1.6391 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6870   -0.4322    1.2428 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4359   -1.6128   -0.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1865   -1.6795   -0.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7807    0.9430   -0.3388 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4678    0.6486   -0.7559 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7983   -0.4673   -2.9681 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9235    0.5779   -3.9945 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0939    1.1271   -2.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2244    1.6744   -1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8095    2.8639   -3.9108 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2166    3.3128   -2.8103 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5126    3.9996   -1.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3342    4.8616   -2.5986 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5201    3.2401   -3.3478 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7202    2.3718   -1.7721 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8486    3.9639   -1.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))


  Mrv1652309132107132D          

 62 63  0  0  1  0            999 V2000
    1.2759    4.5231    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5738    4.1873    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6917    5.0038    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1053    5.6519    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5047    5.1440    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6545    6.0079    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8893    4.4141    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4897    4.0868    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5576    3.6517    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  2  1  1  6  0  0  0
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 31 61  1  0  0  0  0
 61 62  1  6  0  0  0
M  END
> <DATABASE_ID>
HMDB0276229

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCC\C=C/CCCCCCCC(=O)O[C@@H]1COC(=O)CCCCCC[C@H]2[C@@H](O)C[C@@H](O)[C@H](\C=C\[C@@H](O)CCCCC)[C@@H](O)[C@@H](O)[C@@H](OP(O)(=O)OC1)[C@H](O)[C@@H](O)[C@@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C45H81O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-22-26-39(50)60-33-30-58-38(49)25-21-18-17-20-24-34-36(47)29-37(48)35(28-27-32(46)23-19-6-4-2)41(52)43(54)45(44(55)42(53)40(34)51)61-62(56,57)59-31-33/h10-11,27-28,32-37,40-48,51-55H,3-9,12-26,29-31H2,1-2H3,(H,56,57)/b11-10-,28-27+/t32-,33+,34-,35-,36-,37+,40+,41+,42-,43+,44+,45+/m0/s1

> <INCHI_KEY>
KLWFUFRHQVWROL-DEUPVABZSA-N

> <FORMULA>
C45H81O16P

> <MOLECULAR_WEIGHT>
909.101

> <EXACT_MASS>
908.526223526

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
143

> <JCHEM_AVERAGE_POLARIZABILITY>
100.5620266077104

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (9Z)-hexadec-9-enoate

> <ALOGPS_LOGP>
3.41

> <JCHEM_LOGP>
5.119826063666667

> <ALOGPS_LOGS>
-4.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.561591012379019

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.833268245609109

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8950831149956837

> <JCHEM_POLAR_SURFACE_AREA>
270.19999999999993

> <JCHEM_REFRACTIVITY>
234.0653000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
21

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.06e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (9Z)-hexadec-9-enoate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))

HMDB0276229
     RDKit          3D
PI(PGF1alpha/16:1(9Z))
143144  0  0  0  0  0  0  0  0999 V2000
   13.1287   -2.5148    1.3790 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7691   -3.1650    1.2419 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7122   -2.2802    1.8763 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7091   -0.9357    1.1870 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3935   -1.1023   -0.3020 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4164    0.2892   -0.9222 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1136    0.1513   -2.3533 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0918    0.7194   -2.9187 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1220    1.5573   -2.2126 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1739    2.9333   -2.8462 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2222    3.8450   -2.1383 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8181    3.3400   -2.2652 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8851    4.2931   -1.5639 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2367    4.4079   -0.1154 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1519    3.0846    0.5717 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7921    2.5259    0.5039 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7940    3.1047    0.0386 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5624    1.2348    0.9951 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2703    0.6553    0.9534 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7234    0.3134    2.3164 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6975   -1.0429    2.6131 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7877   -1.7384    3.3801 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0533   -2.2959    4.4912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6177   -1.8737    2.9162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6005   -2.0861    4.0450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8337   -1.2691    3.8868 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1254   -2.0641    3.9859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1692   -3.1656    2.9930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1401   -3.1044    1.9003 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7273   -3.5276    0.5090 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7515   -3.3260   -0.5364 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.7172   -4.3838   -0.5510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5460   -2.0853   -0.6111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1808   -1.2262   -1.8411 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.2463   -0.7593   -2.5353 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1519   -0.2193   -1.4533 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5902    1.0384   -0.8915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8059    1.5271   -0.8582 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1036    2.8646   -0.2317 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8542    3.4711    0.1149 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8535    3.7582   -1.1309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1579    3.3628   -1.6610 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3209    3.0940   -0.8174 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2967    1.9860    0.1578 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7107    1.9674    0.8210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1142   -0.0050   -2.5368 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5165    1.1580   -3.2461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7202    0.2596   -2.0152 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6732    0.8249   -0.7599 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3397    0.3666   -1.3073 P   0  0  0  0  0  5  0  0  0  0  0  0
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    1.9516   -0.2040   -1.2893 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2963   -0.5113    0.0228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7151   -1.8627   -1.0426 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4666   -2.5020   -0.9628 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8254   -2.9307   -1.1271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1921   -4.0468   -1.7328 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3094   -3.2540    0.2215 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4216   -4.2677    0.6844 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.2734   -1.8565    0.4737 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.2210   -1.8906    2.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9219   -3.2958    1.3528 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7580   -4.1302    1.8257 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5233   -3.4140    0.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7202   -2.7330    1.8023 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0025   -2.0925    2.9345 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9210   -0.2809    1.6391 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6870   -0.4322    1.2428 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4359   -1.6128   -0.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1865   -1.6795   -0.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7807    0.9430   -0.3388 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4678    0.6486   -0.7559 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7983   -0.4673   -2.9681 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9235    0.5779   -3.9945 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0939    1.1271   -2.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.5126    3.9996   -1.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3342    4.8616   -2.5986 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5201    3.2401   -3.3478 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7202    2.3718   -1.7721 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8486    3.9639   -1.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  O   UNK     0       2.382   8.443   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.071   7.816   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.291   9.340   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.196  10.550   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.809   9.602   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       3.088  11.215   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       3.527   8.240   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.647   7.629   0.000  0.00  0.00           O+0
HETATM    9  P   UNK     0       4.909   6.111   0.000  0.00  0.00           P+0
HETATM   10  O   UNK     0       6.641   6.817   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       6.244   7.701   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       6.354   5.579   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       7.050   4.022   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.495   3.489   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.756   1.972   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       7.573   0.986   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       6.128   1.519   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       7.332   2.713   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       5.378   0.494   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.499   1.065   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.238   2.583   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.792   3.115   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.097   4.673   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.348   5.205   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.176   6.683   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.324   5.143   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -0.835   3.841   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       1.769   4.611   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.714   5.618   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       1.625   6.924   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       4.159   5.086   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.298   3.062   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.623   1.426   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.336  -0.321   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       5.978  -1.048   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       2.844  -1.220   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.299  -2.712   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       0.697  -2.575   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       0.267  -4.053   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -1.229  -4.420   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      10.174   3.797   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      11.806   3.557   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      12.387   2.086   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      12.689   4.959   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      14.202   4.377   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      15.134   5.662   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      16.605   5.094   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      17.851   6.075   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      19.276   5.358   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      19.686   3.797   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      21.152   3.168   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      21.544   1.642   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      20.443   0.565   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      20.826  -0.927   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      19.726  -2.004   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      20.108  -3.496   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      19.008  -4.573   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      19.391  -6.065   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       5.320   7.567   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0       5.889   9.255   0.000  0.00  0.00           O+0
HETATM   61  C   UNK     0       5.581   6.050   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0       7.389   5.558   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   25                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   59                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11   12                                             
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    9   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   41                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24    2   26                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   61                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39                                                            
CONECT   41   14   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57                                                            
CONECT   59    7   60   61                                                  
CONECT   60   59                                                            
CONECT   61   59   31   62                                                  
CONECT   62   61                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  126    0
END
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3D PDB for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))

COMPND    HMDB0276229
HETATM    1  C1  UNL     1      13.129  -2.515   1.379  1.00  0.00           C  
HETATM    2  C2  UNL     1      11.769  -3.165   1.242  1.00  0.00           C  
HETATM    3  C3  UNL     1      10.712  -2.280   1.876  1.00  0.00           C  
HETATM    4  C4  UNL     1      10.709  -0.936   1.187  1.00  0.00           C  
HETATM    5  C5  UNL     1      10.393  -1.102  -0.302  1.00  0.00           C  
HETATM    6  C6  UNL     1      10.416   0.289  -0.922  1.00  0.00           C  
HETATM    7  C7  UNL     1      10.114   0.151  -2.353  1.00  0.00           C  
HETATM    8  C8  UNL     1       9.092   0.719  -2.919  1.00  0.00           C  
HETATM    9  C9  UNL     1       8.122   1.557  -2.213  1.00  0.00           C  
HETATM   10  C10 UNL     1       8.174   2.933  -2.846  1.00  0.00           C  
HETATM   11  C11 UNL     1       7.222   3.845  -2.138  1.00  0.00           C  
HETATM   12  C12 UNL     1       5.818   3.340  -2.265  1.00  0.00           C  
HETATM   13  C13 UNL     1       4.885   4.293  -1.564  1.00  0.00           C  
HETATM   14  C14 UNL     1       5.237   4.408  -0.115  1.00  0.00           C  
HETATM   15  C15 UNL     1       5.152   3.085   0.572  1.00  0.00           C  
HETATM   16  C16 UNL     1       3.792   2.526   0.504  1.00  0.00           C  
HETATM   17  O1  UNL     1       2.794   3.105   0.039  1.00  0.00           O  
HETATM   18  O2  UNL     1       3.562   1.235   0.995  1.00  0.00           O  
HETATM   19  C17 UNL     1       2.270   0.655   0.953  1.00  0.00           C  
HETATM   20  C18 UNL     1       1.723   0.313   2.316  1.00  0.00           C  
HETATM   21  O3  UNL     1       1.698  -1.043   2.613  1.00  0.00           O  
HETATM   22  C19 UNL     1       0.788  -1.738   3.380  1.00  0.00           C  
HETATM   23  O4  UNL     1       1.053  -2.296   4.491  1.00  0.00           O  
HETATM   24  C20 UNL     1      -0.618  -1.874   2.916  1.00  0.00           C  
HETATM   25  C21 UNL     1      -1.601  -2.086   4.045  1.00  0.00           C  
HETATM   26  C22 UNL     1      -2.834  -1.269   3.887  1.00  0.00           C  
HETATM   27  C23 UNL     1      -4.125  -2.064   3.986  1.00  0.00           C  
HETATM   28  C24 UNL     1      -4.169  -3.166   2.993  1.00  0.00           C  
HETATM   29  C25 UNL     1      -5.140  -3.104   1.900  1.00  0.00           C  
HETATM   30  C26 UNL     1      -4.727  -3.528   0.509  1.00  0.00           C  
HETATM   31  C27 UNL     1      -5.752  -3.326  -0.536  1.00  0.00           C  
HETATM   32  O5  UNL     1      -6.717  -4.384  -0.551  1.00  0.00           O  
HETATM   33  C28 UNL     1      -6.546  -2.085  -0.611  1.00  0.00           C  
HETATM   34  C29 UNL     1      -6.181  -1.226  -1.841  1.00  0.00           C  
HETATM   35  O6  UNL     1      -7.246  -0.759  -2.535  1.00  0.00           O  
HETATM   36  C30 UNL     1      -5.152  -0.219  -1.453  1.00  0.00           C  
HETATM   37  C31 UNL     1      -5.590   1.038  -0.891  1.00  0.00           C  
HETATM   38  C32 UNL     1      -6.806   1.527  -0.858  1.00  0.00           C  
HETATM   39  C33 UNL     1      -7.104   2.865  -0.232  1.00  0.00           C  
HETATM   40  O7  UNL     1      -5.854   3.471   0.115  1.00  0.00           O  
HETATM   41  C34 UNL     1      -7.853   3.758  -1.131  1.00  0.00           C  
HETATM   42  C35 UNL     1      -9.158   3.363  -1.661  1.00  0.00           C  
HETATM   43  C36 UNL     1     -10.321   3.094  -0.817  1.00  0.00           C  
HETATM   44  C37 UNL     1     -10.297   1.986   0.158  1.00  0.00           C  
HETATM   45  C38 UNL     1     -11.711   1.967   0.821  1.00  0.00           C  
HETATM   46  C39 UNL     1      -4.114  -0.005  -2.537  1.00  0.00           C  
HETATM   47  O8  UNL     1      -4.517   1.158  -3.246  1.00  0.00           O  
HETATM   48  C40 UNL     1      -2.720   0.260  -2.015  1.00  0.00           C  
HETATM   49  O9  UNL     1      -2.673   0.825  -0.760  1.00  0.00           O  
HETATM   50  C41 UNL     1      -1.761  -0.870  -2.152  1.00  0.00           C  
HETATM   51  O10 UNL     1      -0.474  -0.437  -2.518  1.00  0.00           O  
HETATM   52  P1  UNL     1       0.340   0.367  -1.307  1.00  0.00           P  
HETATM   53  O11 UNL     1      -0.273   0.254   0.048  1.00  0.00           O  
HETATM   54  O12 UNL     1       0.462   2.031  -1.689  1.00  0.00           O  
HETATM   55  O13 UNL     1       1.952  -0.204  -1.289  1.00  0.00           O  
HETATM   56  C42 UNL     1       2.296  -0.511   0.023  1.00  0.00           C  
HETATM   57  C43 UNL     1      -1.715  -1.863  -1.043  1.00  0.00           C  
HETATM   58  O14 UNL     1      -0.467  -2.502  -0.963  1.00  0.00           O  
HETATM   59  C44 UNL     1      -2.825  -2.931  -1.127  1.00  0.00           C  
HETATM   60  O15 UNL     1      -2.192  -4.047  -1.733  1.00  0.00           O  
HETATM   61  C45 UNL     1      -3.309  -3.254   0.221  1.00  0.00           C  
HETATM   62  O16 UNL     1      -2.422  -4.268   0.684  1.00  0.00           O  
HETATM   63  H1  UNL     1      13.273  -1.857   0.474  1.00  0.00           H  
HETATM   64  H2  UNL     1      13.221  -1.891   2.280  1.00  0.00           H  
HETATM   65  H3  UNL     1      13.922  -3.296   1.353  1.00  0.00           H  
HETATM   66  H4  UNL     1      11.758  -4.130   1.826  1.00  0.00           H  
HETATM   67  H5  UNL     1      11.523  -3.414   0.210  1.00  0.00           H  
HETATM   68  H6  UNL     1       9.720  -2.733   1.802  1.00  0.00           H  
HETATM   69  H7  UNL     1      11.002  -2.093   2.934  1.00  0.00           H  
HETATM   70  H8  UNL     1       9.921  -0.281   1.639  1.00  0.00           H  
HETATM   71  H9  UNL     1      11.687  -0.432   1.243  1.00  0.00           H  
HETATM   72  H10 UNL     1       9.436  -1.613  -0.470  1.00  0.00           H  
HETATM   73  H11 UNL     1      11.187  -1.679  -0.797  1.00  0.00           H  
HETATM   74  H12 UNL     1       9.781   0.943  -0.339  1.00  0.00           H  
HETATM   75  H13 UNL     1      11.468   0.649  -0.756  1.00  0.00           H  
HETATM   76  H14 UNL     1      10.798  -0.467  -2.968  1.00  0.00           H  
HETATM   77  H15 UNL     1       8.923   0.578  -3.995  1.00  0.00           H  
HETATM   78  H16 UNL     1       7.094   1.127  -2.374  1.00  0.00           H  
HETATM   79  H17 UNL     1       8.224   1.674  -1.144  1.00  0.00           H  
HETATM   80  H18 UNL     1       7.810   2.864  -3.911  1.00  0.00           H  
HETATM   81  H19 UNL     1       9.217   3.313  -2.810  1.00  0.00           H  
HETATM   82  H20 UNL     1       7.513   4.000  -1.070  1.00  0.00           H  
HETATM   83  H21 UNL     1       7.334   4.862  -2.599  1.00  0.00           H  
HETATM   84  H22 UNL     1       5.520   3.240  -3.348  1.00  0.00           H  
HETATM   85  H23 UNL     1       5.720   2.372  -1.772  1.00  0.00           H  
HETATM   86  H24 UNL     1       3.849   3.964  -1.768  1.00  0.00           H  
HETATM   87  H25 UNL     1       5.015   5.287  -2.080  1.00  0.00           H  
HETATM   88  H26 UNL     1       6.190   4.933   0.061  1.00  0.00           H  
HETATM   89  H27 UNL     1       4.432   5.103   0.318  1.00  0.00           H  
HETATM   90  H28 UNL     1       5.391   3.271   1.666  1.00  0.00           H  
HETATM   91  H29 UNL     1       5.906   2.393   0.146  1.00  0.00           H  
HETATM   92  H30 UNL     1       1.604   1.421   0.508  1.00  0.00           H  
HETATM   93  H31 UNL     1       2.457   0.776   3.043  1.00  0.00           H  
HETATM   94  H32 UNL     1       0.774   0.840   2.513  1.00  0.00           H  
HETATM   95  H33 UNL     1      -0.664  -2.716   2.167  1.00  0.00           H  
HETATM   96  H34 UNL     1      -0.968  -0.975   2.373  1.00  0.00           H  
HETATM   97  H35 UNL     1      -1.824  -3.143   4.243  1.00  0.00           H  
HETATM   98  H36 UNL     1      -1.083  -1.714   4.979  1.00  0.00           H  
HETATM   99  H37 UNL     1      -2.864  -0.397   4.593  1.00  0.00           H  
HETATM  100  H38 UNL     1      -2.872  -0.778   2.873  1.00  0.00           H  
HETATM  101  H39 UNL     1      -4.932  -1.314   3.885  1.00  0.00           H  
HETATM  102  H40 UNL     1      -4.180  -2.423   5.035  1.00  0.00           H  
HETATM  103  H41 UNL     1      -3.098  -3.319   2.653  1.00  0.00           H  
HETATM  104  H42 UNL     1      -4.346  -4.111   3.553  1.00  0.00           H  
HETATM  105  H43 UNL     1      -5.685  -2.106   1.846  1.00  0.00           H  
HETATM  106  H44 UNL     1      -5.989  -3.757   2.237  1.00  0.00           H  
HETATM  107  H45 UNL     1      -4.731  -4.677   0.623  1.00  0.00           H  
HETATM  108  H46 UNL     1      -5.297  -3.469  -1.566  1.00  0.00           H  
HETATM  109  H47 UNL     1      -7.317  -4.174   0.224  1.00  0.00           H  
HETATM  110  H48 UNL     1      -6.483  -1.369   0.204  1.00  0.00           H  
HETATM  111  H49 UNL     1      -7.660  -2.246  -0.746  1.00  0.00           H  
HETATM  112  H50 UNL     1      -5.655  -1.960  -2.535  1.00  0.00           H  
HETATM  113  H51 UNL     1      -7.645  -1.439  -3.128  1.00  0.00           H  
HETATM  114  H52 UNL     1      -4.560  -0.738  -0.619  1.00  0.00           H  
HETATM  115  H53 UNL     1      -4.798   1.679  -0.429  1.00  0.00           H  
HETATM  116  H54 UNL     1      -7.619   0.980  -1.274  1.00  0.00           H  
HETATM  117  H55 UNL     1      -7.591   2.707   0.719  1.00  0.00           H  
HETATM  118  H56 UNL     1      -5.545   3.003   0.915  1.00  0.00           H  
HETATM  119  H57 UNL     1      -7.138   4.003  -1.998  1.00  0.00           H  
HETATM  120  H58 UNL     1      -7.943   4.796  -0.656  1.00  0.00           H  
HETATM  121  H59 UNL     1      -9.058   2.477  -2.383  1.00  0.00           H  
HETATM  122  H60 UNL     1      -9.458   4.189  -2.408  1.00  0.00           H  
HETATM  123  H61 UNL     1     -11.203   2.922  -1.507  1.00  0.00           H  
HETATM  124  H62 UNL     1     -10.636   4.021  -0.245  1.00  0.00           H  
HETATM  125  H63 UNL     1      -9.634   2.095   1.014  1.00  0.00           H  
HETATM  126  H64 UNL     1     -10.206   0.982  -0.279  1.00  0.00           H  
HETATM  127  H65 UNL     1     -11.686   1.078   1.466  1.00  0.00           H  
HETATM  128  H66 UNL     1     -11.792   2.893   1.409  1.00  0.00           H  
HETATM  129  H67 UNL     1     -12.490   1.847   0.058  1.00  0.00           H  
HETATM  130  H68 UNL     1      -4.127  -0.797  -3.313  1.00  0.00           H  
HETATM  131  H69 UNL     1      -4.782   1.872  -2.613  1.00  0.00           H  
HETATM  132  H70 UNL     1      -2.251   1.090  -2.678  1.00  0.00           H  
HETATM  133  H71 UNL     1      -2.989   0.224  -0.065  1.00  0.00           H  
HETATM  134  H72 UNL     1      -2.102  -1.452  -3.064  1.00  0.00           H  
HETATM  135  H73 UNL     1      -0.312   2.374  -2.164  1.00  0.00           H  
HETATM  136  H74 UNL     1       1.643  -1.348   0.350  1.00  0.00           H  
HETATM  137  H75 UNL     1       3.325  -0.976  -0.030  1.00  0.00           H  
HETATM  138  H76 UNL     1      -1.885  -1.361  -0.077  1.00  0.00           H  
HETATM  139  H77 UNL     1      -0.555  -3.389  -0.493  1.00  0.00           H  
HETATM  140  H78 UNL     1      -3.507  -2.563  -1.871  1.00  0.00           H  
HETATM  141  H79 UNL     1      -2.334  -4.088  -2.692  1.00  0.00           H  
HETATM  142  H80 UNL     1      -3.021  -2.382   0.888  1.00  0.00           H  
HETATM  143  H81 UNL     1      -2.835  -5.139   0.519  1.00  0.00           H  
CONECT    1    2   63   64   65
CONECT    2    3   66   67
CONECT    3    4   68   69
CONECT    4    5   70   71
CONECT    5    6   72   73
CONECT    6    7   74   75
CONECT    7    8    8   76
CONECT    8    9   77
CONECT    9   10   78   79
CONECT   10   11   80   81
CONECT   11   12   82   83
CONECT   12   13   84   85
CONECT   13   14   86   87
CONECT   14   15   88   89
CONECT   15   16   90   91
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   56   92
CONECT   20   21   93   94
CONECT   21   22
CONECT   22   23   23   24
CONECT   24   25   95   96
CONECT   25   26   97   98
CONECT   26   27   99  100
CONECT   27   28  101  102
CONECT   28   29  103  104
CONECT   29   30  105  106
CONECT   30   31   61  107
CONECT   31   32   33  108
CONECT   32  109
CONECT   33   34  110  111
CONECT   34   35   36  112
CONECT   35  113
CONECT   36   37   46  114
CONECT   37   38   38  115
CONECT   38   39  116
CONECT   39   40   41  117
CONECT   40  118
CONECT   41   42  119  120
CONECT   42   43  121  122
CONECT   43   44  123  124
CONECT   44   45  125  126
CONECT   45  127  128  129
CONECT   46   47   48  130
CONECT   47  131
CONECT   48   49   50  132
CONECT   49  133
CONECT   50   51   57  134
CONECT   51   52
CONECT   52   53   53   54   55
CONECT   54  135
CONECT   55   56
CONECT   56  136  137
CONECT   57   58   59  138
CONECT   58  139
CONECT   59   60   61  140
CONECT   60  141
CONECT   61   62  142
CONECT   62  143
END
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SMILES for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))

CCCCCC\C=C/CCCCCCCC(=O)O[C@@H]1COC(=O)CCCCCC[C@H]2[C@@H](O)C[C@@H](O)[C@H](\C=C\[C@@H](O)CCCCC)[C@@H](O)[C@@H](O)[C@@H](OP(O)(=O)OC1)[C@H](O)[C@@H](O)[C@@H]2O
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INCHI for HMDB0276229 (PI(PGF1alpha/16:1(9Z)))

InChI=1S/C45H81O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-22-26-39(50)60-33-30-58-38(49)25-21-18-17-20-24-34-36(47)29-37(48)35(28-27-32(46)23-19-6-4-2)41(52)43(54)45(44(55)42(53)40(34)51)61-62(56,57)59-31-33/h10-11,27-28,32-37,40-48,51-55H,3-9,12-26,29-31H2,1-2H3,(H,56,57)/b11-10-,28-27+/t32-,33+,34-,35-,36-,37+,40+,41+,42-,43+,44+,45+/m0/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-Octahydroxy-20-[(3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3-phosphabicyclo[14.6.3]pentacosan-6-yl (9Z)-hexadec-9-enoic acidGenerator
Chemical FormulaC45H81O16P
Average Molecular Weight909.101
Monoisotopic Molecular Weight908.526223526
IUPAC Name(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (9Z)-hexadec-9-enoate
Traditional Name(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (9Z)-hexadec-9-enoate
CAS Registry NumberNot Available
SMILES
CCCCCC\C=C/CCCCCCCC(=O)O[C@@H]1COC(=O)CCCCCC[C@H]2[C@@H](O)C[C@@H](O)[C@H](\C=C\[C@@H](O)CCCCC)[C@@H](O)[C@@H](O)[C@@H](OP(O)(=O)OC1)[C@H](O)[C@@H](O)[C@@H]2O
InChI Identifier
InChI=1S/C45H81O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-22-26-39(50)60-33-30-58-38(49)25-21-18-17-20-24-34-36(47)29-37(48)35(28-27-32(46)23-19-6-4-2)41(52)43(54)45(44(55)42(53)40(34)51)61-62(56,57)59-31-33/h10-11,27-28,32-37,40-48,51-55H,3-9,12-26,29-31H2,1-2H3,(H,56,57)/b11-10-,28-27+/t32-,33+,34-,35-,36-,37+,40+,41+,42-,43+,44+,45+/m0/s1
InChI KeyKLWFUFRHQVWROL-DEUPVABZSA-N
Chemical Taxonomy
ClassificationNot classified
Ontology
Physiological effect
Health effect
Disposition
Biological location
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.41ALOGPS
logP5.12ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)1.83ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area270.2 ŲChemAxon
Rotatable Bond Count21ChemAxon
Refractivity234.07 m³·mol⁻¹ChemAxon
Polarizability100.56 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+297.37632859911
AllCCS[M+H-H2O]+297.67332859911
AllCCS[M+Na]+296.96832859911
AllCCS[M+NH4]+297.06532859911
AllCCS[M-H]-301.58232859911
AllCCS[M+Na-2H]-307.69432859911
AllCCS[M+HCOO]-314.4232859911
DeepCCS[M+H]+304.56930932474
DeepCCS[M-H]-302.67430932474
DeepCCS[M-2H]-336.69830932474
DeepCCS[M+Na]+310.57330932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/16:1(9Z)) 10V, Positive-QTOFsplash10-0a4l-0000000089-511aafe87d4dc48f3a8c2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/16:1(9Z)) 20V, Positive-QTOFsplash10-006x-3100000392-2927666a09d5acaf68362021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/16:1(9Z)) 40V, Positive-QTOFsplash10-05fr-9400004000-682ab8ea970b42f0f61f2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/16:1(9Z)) 10V, Negative-QTOFsplash10-0a4i-0000000019-8abc9d6f1da6f72e5ad02021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/16:1(9Z)) 20V, Negative-QTOFsplash10-0pbi-0020009036-06cf6d18d6da826cea7a2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/16:1(9Z)) 40V, Negative-QTOFsplash10-0udi-0000009000-5a8419819f79c53827cc2021-10-19Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available