Hmdb loader
Record Information
Version5.0
StatusPredicted
Creation Date2021-09-13 05:22:29 UTC
Update Date2022-11-30 20:00:41 UTC
HMDB IDHMDB0276301
Secondary Accession NumbersNone
Metabolite Identification
Common NamePI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z))
DescriptionPI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z)) is an oxidized phosphatidylinositol (PI). Phosphatidylinositols are important lipids, both as a key membrane constituent and as a participant in essential metabolic processes, both directly and via a number of metabolites. Phosphatidylinositols are acidic (anionic) phospholipids that consist of a phosphatidic acid backbone, linked via the phosphate group to inositol (hexahydroxycyclohexane). Phosphatidylinositols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z)), in particular, consists of one chain of 12-hydroxyleicosapentaenoyl at the C-1 position and one chain of 9Z,12Z-hexadecenoyl at the C-2 position. The inositol group that is part of every phosphatidylinositol lipid is covalently linked to the phosphate group that acts as a bridge to the lipid tail. In most organisms, the stereochemical form of this inositol is myo-D-inositol (with one axial hydroxyl in position 2 with the remainder equatorial), although other forms can be found in certain plant phosphatidylinositols. Phosphatidylinositol is especially abundant in brain tissue, where it can amount to 10% of the phospholipids, but it is present in all tissues and cell types. There is usually less of it than of phosphatidylcholine, phosphatidylethanolamine and phosphatidylserine. In animal tissues, phosphatidylinositol is the primary source of the arachidonic acid required for biosynthesis of eicosanoids, including prostaglandins, via the action of the enzyme phospholipase A2. Phosphatidylinositol can be phosphorylated by a number of different kinases that place the phosphate moiety on positions 4 and 5 of the inositol ring, although position 3 can also be phosphorylated by a specific kinase. Seven different isomers are known, but the most important in both quantitative and biological terms are phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate. Phosphatidylinositol and the phosphatidylinositol phosphates are the main source of diacylglycerols that serve as signaling molecules, via the action of phospholipase C enzymes. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PIs composed exclusively of non-phosphorylated inositol exhibit a net charge of -1 at physiological pH. Molecules with phosphorylated inositol (such as PIP, PIP2, PIP3, etc.) are termed polyphosphoinositides. The polyphosphoinositides are important intracellular transducers of signals emanating from the plasma membrane. The synthesis of PI involves CDP-activated 1,2-diacylglycerol condensation with myo-inositol.
Structure
Thumb
Synonyms
ValueSource
[(2R)-2-[(9Z,12Z)-Hexadeca-9,12-dienoyloxy]-3-{[(8Z,10E,14Z,17Z)-12-hydroxyicosa-5,8,10,14,17-pentaenoyl]oxy}propoxy]({[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy})phosphinateGenerator
Chemical FormulaC45H73O14P
Average Molecular Weight869.039
Monoisotopic Molecular Weight868.473794029
IUPAC Name[(2R)-2-[(9Z,12Z)-hexadeca-9,12-dienoyloxy]-3-{[(5Z,8Z,10E,14Z,17Z)-12-hydroxyicosa-5,8,10,14,17-pentaenoyl]oxy}propoxy]({[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy})phosphinic acid
Traditional Name(2R)-2-[(9Z,12Z)-hexadeca-9,12-dienoyloxy]-3-{[(5Z,8Z,10E,14Z,17Z)-12-hydroxyicosa-5,8,10,14,17-pentaenoyl]oxy}propoxy([(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H][C@@](COC(=O)CCC\C=C/C\C=C/C=C/C(O)C\C=C/C\C=C/CC)(COP(O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)OC(=O)CCCCCCC\C=C/C\C=C/CCC
InChI Identifier
InChI=1S/C45H73O14P/c1-3-5-7-9-11-12-13-14-15-16-21-25-29-33-39(48)58-37(35-57-60(54,55)59-45-43(52)41(50)40(49)42(51)44(45)53)34-56-38(47)32-28-24-20-18-17-19-23-27-31-36(46)30-26-22-10-8-6-4-2/h6-9,12-13,18-20,22-23,26-27,31,36-37,40-46,49-53H,3-5,10-11,14-17,21,24-25,28-30,32-35H2,1-2H3,(H,54,55)/b8-6-,9-7-,13-12-,20-18-,23-19-,26-22-,31-27+/t36?,37-,40-,41-,42+,43-,44-,45-/m1/s1
InChI KeyQEGVNBQIPZWTPL-BOTWVPRESA-N
Chemical Taxonomy
ClassificationNot classified
Ontology
Physiological effect
Disposition
Process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP5.9ALOGPS
logP7.01ChemAxon
logS-5.6ALOGPS
pKa (Strongest Acidic)1.83ChemAxon
pKa (Strongest Basic)-1.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area229.74 ŲChemAxon
Rotatable Bond Count35ChemAxon
Refractivity238.3 m³·mol⁻¹ChemAxon
Polarizability95.73 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+294.23632859911
AllCCS[M+H-H2O]+294.4232859911
AllCCS[M+Na]+293.96332859911
AllCCS[M+NH4]+294.02932859911
AllCCS[M-H]-287.49832859911
AllCCS[M+Na-2H]-294.68132859911
AllCCS[M+HCOO]-302.54732859911
DeepCCS[M+H]+263.28530932474
DeepCCS[M-H]-261.63230932474
DeepCCS[M-2H]-295.66530932474
DeepCCS[M+Na]+269.44230932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z))[H][C@@](COC(=O)CCC\C=C/C\C=C/C=C/C(O)C\C=C/C\C=C/CC)(COP(O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)OC(=O)CCCCCCC\C=C/C\C=C/CCC5795.6Standard polar33892256
PI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z))[H][C@@](COC(=O)CCC\C=C/C\C=C/C=C/C(O)C\C=C/C\C=C/CC)(COP(O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)OC(=O)CCCCCCC\C=C/C\C=C/CCC5023.5Standard non polar33892256
PI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z))[H][C@@](COC(=O)CCC\C=C/C\C=C/C=C/C(O)C\C=C/C\C=C/CC)(COP(O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)OC(=O)CCCCCCC\C=C/C\C=C/CCC6229.3Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z)) 10V, Negative-QTOFsplash10-014i-0000000090-82e7fcedb8f9fd79c8442021-09-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z)) 20V, Negative-QTOFsplash10-014i-0000000090-82e7fcedb8f9fd79c8442021-09-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(20:5(5Z,8Z,10E,14Z,17Z)-OH(12)/16:2(9Z,12Z)) 40V, Negative-QTOFsplash10-0ue9-0075509010-6b92dd2786b299d166da2021-09-28Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available