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Showing metabocard for PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) (HMDB0277580)

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Record Information
Version5.0
StatusPredicted
Creation Date2021-09-13 08:04:23 UTC
Update Date2022-11-30 20:01:19 UTC
HMDB IDHMDB0277580
Secondary Accession NumbersNone
Metabolite Identification
Common NamePI(PGF1alpha/20:4(5Z,8Z,11Z,14Z))
DescriptionPI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) is an oxidized phosphatidylinositol (PI). Phosphatidylinositols are important lipids, both as a key membrane constituent and as a participant in essential metabolic processes, both directly and via a number of metabolites. Phosphatidylinositols are acidic (anionic) phospholipids that consist of a phosphatidic acid backbone, linked via the phosphate group to inositol (hexahydroxycyclohexane). Phosphatidylinositols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)), in particular, consists of one chain of Prostaglandin F1alpha at the C-1 position and one chain of 5Z,8Z,11Z,14Z-eicosatetraenoyl at the C-2 position. The inositol group that is part of every phosphatidylinositol lipid is covalently linked to the phosphate group that acts as a bridge to the lipid tail. In most organisms, the stereochemical form of this inositol is myo-D-inositol (with one axial hydroxyl in position 2 with the remainder equatorial), although other forms can be found in certain plant phosphatidylinositols. Phosphatidylinositol is especially abundant in brain tissue, where it can amount to 10% of the phospholipids, but it is present in all tissues and cell types. There is usually less of it than of phosphatidylcholine, phosphatidylethanolamine and phosphatidylserine. In animal tissues, phosphatidylinositol is the primary source of the arachidonic acid required for biosynthesis of eicosanoids, including prostaglandins, via the action of the enzyme phospholipase A2. Phosphatidylinositol can be phosphorylated by a number of different kinases that place the phosphate moiety on positions 4 and 5 of the inositol ring, although position 3 can also be phosphorylated by a specific kinase. Seven different isomers are known, but the most important in both quantitative and biological terms are phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate. Phosphatidylinositol and the phosphatidylinositol phosphates are the main source of diacylglycerols that serve as signaling molecules, via the action of phospholipase C enzymes. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PIs composed exclusively of non-phosphorylated inositol exhibit a net charge of -1 at physiological pH. Molecules with phosphorylated inositol (such as PIP, PIP2, PIP3, etc.) are termed polyphosphoinositides. The polyphosphoinositides are important intracellular transducers of signals emanating from the plasma membrane. The synthesis of PI involves CDP-activated 1,2-diacylglycerol condensation with myo-inositol.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))


  Mrv1652309132110042D          

 66 67  0  0  1  0            999 V2000
    2.3535    5.7967    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6056    5.7074    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9878    6.4385    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6528    7.2466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8013    6.3008    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2035    7.0714    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9217    5.4847    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3795    4.9767    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2419    4.1632    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.2054    4.2178    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1825    4.7257    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8775    3.6373    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6768    1.0998    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.0597    4.1141    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4240    4.6400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D MOL for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))

HMDB0277580
     RDKit          3D
PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z))
149150  0  0  0  0  0  0  0  0999 V2000
   13.9279   -0.3770    2.4137 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5346   -0.5735    1.8236 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0730    0.6791    1.1186 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9461    1.0846   -0.0069 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0496    0.0794   -1.1412 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7711   -0.1936   -1.7738 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1806   -1.3524   -1.8967 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7497   -2.5923   -1.3949 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0868   -3.3633   -0.3716 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0334   -3.1497    0.3082 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0931   -1.9999    0.2905 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2301    2.1244    1.0653 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7944    1.9750    0.7276 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4520    1.8264    1.2250 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.2416    0.5806    1.7330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2831   -1.9336   -2.1002 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9360   -2.2831   -2.3654 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7246   -0.8228   -2.9494 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9156   -0.8552   -4.1145 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.1406   -0.2957   -4.7299 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.1593    0.7138    2.3462 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9376   -0.6212    3.4941 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.6937   -1.0050    1.9260 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5132   -1.4589    1.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8452   -0.7549    2.6705 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0625    1.4941    1.8617 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0111    0.5206    0.8213 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9665    1.2448    0.3909 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5521    2.0239   -0.4419 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6582   -0.7593   -0.8184 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6863    0.6052   -1.9260 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))


  Mrv1652309132110042D          

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M  END
> <DATABASE_ID>
HMDB0277580

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)O[C@@H]1COC(=O)CCCCCC[C@H]2[C@@H](O)C[C@@H](O)[C@H](\C=C\[C@@H](O)CCCCC)[C@@H](O)[C@@H](O)[C@@H](OP(O)(=O)OC1)[C@H](O)[C@@H](O)[C@@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C49H83O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-26-30-43(54)64-37-34-62-42(53)29-25-22-21-24-28-38-40(51)33-41(52)39(32-31-36(50)27-23-6-4-2)45(56)47(58)49(48(59)46(57)44(38)55)65-66(60,61)63-35-37/h9-10,12-13,15-16,18-19,31-32,36-41,44-52,55-59H,3-8,11,14,17,20-30,33-35H2,1-2H3,(H,60,61)/b10-9-,13-12-,16-15-,19-18-,32-31+/t36-,37+,38-,39-,40-,41+,44+,45+,46-,47+,48+,49+/m0/s1

> <INCHI_KEY>
LLMQNHDMJDFGGL-OLPSCLEISA-N

> <FORMULA>
C49H83O16P

> <MOLECULAR_WEIGHT>
959.161

> <EXACT_MASS>
958.541873591

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
149

> <JCHEM_AVERAGE_POLARIZABILITY>
104.1867201416749

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate

> <ALOGPS_LOGP>
4.22

> <JCHEM_LOGP>
5.812335753666666

> <ALOGPS_LOGS>
-4.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.561591012379019

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8332682456090437

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8950831149956837

> <JCHEM_POLAR_SURFACE_AREA>
270.19999999999993

> <JCHEM_REFRACTIVITY>
255.8191000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
22

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.92e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))

HMDB0277580
     RDKit          3D
PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z))
149150  0  0  0  0  0  0  0  0999 V2000
   13.9279   -0.3770    2.4137 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5346   -0.5735    1.8236 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0730    0.6791    1.1186 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9461    1.0846   -0.0069 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0496    0.0794   -1.1412 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7711   -0.1936   -1.7738 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1806   -1.3524   -1.8967 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7497   -2.5923   -1.3949 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0868   -3.3633   -0.3716 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0334   -3.1497    0.3082 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0931   -1.9999    0.2905 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7207   -2.4457   -0.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9309   -2.0057   -0.9661 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2746   -0.9526   -1.8934 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4828    0.2791   -1.9369 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5008    0.6261   -1.1848 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8659   -0.0375   -0.0821 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9160    0.8134    1.2088 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2301    2.1244    1.0653 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7944    1.9750    0.7276 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5219    1.8459   -0.5108 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7666    1.9707    1.6774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4520    1.8264    1.2250 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4179    3.0185    1.5535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4677    2.7564    2.4192 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7735    3.1909    2.3649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3376    3.8540    3.2679 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5696    2.8540    1.1598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4682    3.8635    0.0565 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0157    3.1746   -1.2136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9550    3.3902   -2.3587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1982    2.5419   -2.2762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1894    1.4090   -3.2794 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0483    0.0461   -2.6284 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.4161   -0.5691   -2.3495 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.3839   -1.8423   -2.8853 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7592   -0.5549   -0.8831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9076   -1.8883   -0.2446 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.0444   -2.9187   -1.2053 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9721   -2.2576    0.8350 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4882   -1.8160    2.1480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4290   -0.9013    2.2999 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8971   -0.5148    3.6497 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.7525   -0.1626    4.4229 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8565    0.5763    3.7779 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2089    0.5286    3.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2709    0.3264    1.7419 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7446    0.3992    1.2710 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.4989   -0.6813    1.9756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5464   -1.8973    0.7524 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0365   -1.9763    2.0839 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6713   -2.6654   -0.1710 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2849   -3.3162   -1.2046 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4497   -1.8362   -0.6301 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3034   -2.2895    0.0323 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0445   -1.1851   -0.1276 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.5314   -0.0116   -0.9404 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3124   -1.9035   -0.8535 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4723   -0.5480    1.3529 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2416    0.5806    1.7330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2831   -1.9336   -2.1002 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9360   -2.2831   -2.3654 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7246   -0.8228   -2.9494 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9156   -0.8552   -4.1145 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1616   -0.8793   -3.4415 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1406   -0.2957   -4.7299 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.1593    0.7138    2.3462 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9376   -0.6212    3.4941 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.6937   -1.0050    1.9260 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5132   -1.4589    1.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8452   -0.7549    2.6705 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0625    1.4941    1.8617 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0111    0.5206    0.8213 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9665    1.2448    0.3909 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5521    2.0239   -0.4419 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6582   -0.7593   -0.8184 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6863    0.6052   -1.9260 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2387    0.6791   -2.2002 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1982   -1.4088   -2.4616 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8302   -3.2995   -2.3125 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.8634   -2.4829   -1.1635 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6280   -4.3504   -0.1451 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7640   -3.9676    1.0497 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0701   -1.6691    1.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4574   -1.1150   -0.2148 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3254   -3.2672    0.6390 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9304   -2.5362   -1.0828 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3513   -0.6678   -1.6752 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3583   -1.4068   -2.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8122    1.0082   -2.7669 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0522    1.6591   -1.4431 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7750   -0.2352   -0.3209 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2535   -0.9930    0.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9611    0.9730    1.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3597    0.2178    1.9595 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7434    2.7799    0.3026 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3410    2.6701    2.0148 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4766    1.7341    0.1186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7010    3.5058    0.6091 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2587    3.7540    2.0800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6507    2.7253    1.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2660    1.8354    0.7728 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7700    4.6691    0.3834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4387    4.3883   -0.1037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8073    2.0829   -1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0380    3.6164   -1.4937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2735    4.4524   -2.3469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4050    3.2405   -3.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2475    2.1249   -1.2512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1244    3.1644   -2.3889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3756    1.5901   -4.0099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1380    1.4086   -3.8877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5768    0.1952   -1.6630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1534    0.0333   -2.9398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0472   -2.0327   -3.5667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7249    0.0522   -0.8270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0539    0.0545   -0.2845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9470   -1.9128    0.2283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2654   -3.7731   -0.7743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0313   -3.4142    0.9267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0957   -2.2471    3.0919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8357   -0.3897    1.4512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2811   -1.4310    4.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6670    0.8206    4.4537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3512    1.5632    3.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9330    0.7863    4.9137 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.3806   -1.2500    2.6341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2138   -3.4891    0.4612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6299   -4.1825   -0.8919 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8430   -1.2107   -1.3467 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.0504   -0.1985   -5.0918 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
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 35 37  1  0
 37 38  1  0
 38 39  1  0
 38 40  1  0
 40 41  1  0
 41 42  2  0
 42 43  1  0
 43 44  1  0
 43 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 40 50  1  0
 50 51  1  0
 50 52  1  0
 52 53  1  0
 52 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  2  0
 56 58  1  0
 56 59  1  0
 59 60  1  0
 54 61  1  0
 61 62  1  0
 61 63  1  0
 63 64  1  0
 63 65  1  0
 65 66  1  0
 60 23  1  0
 65 34  1  0
  1 67  1  0
  1 68  1  0
  1 69  1  0
  2 70  1  0
  2 71  1  0
  3 72  1  0
  3 73  1  0
  4 74  1  0
  4 75  1  0
  5 76  1  0
  5 77  1  0
  6 78  1  0
  7 79  1  0
  8 80  1  0
  8 81  1  0
  9 82  1  0
 10 83  1  0
 11 84  1  0
 11 85  1  0
 12 86  1  0
 13 87  1  0
 14 88  1  0
 14 89  1  0
 15 90  1  0
 16 91  1  0
 17 92  1  0
 17 93  1  0
 18 94  1  0
 18 95  1  0
 19 96  1  0
 19 97  1  0
 23 98  1  6
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 24100  1  0
 28101  1  0
 28102  1  0
 29103  1  0
 29104  1  0
 30105  1  0
 30106  1  0
 31107  1  0
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 39119  1  0
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 60143  1  0
 61144  1  6
 62145  1  0
 63146  1  1
 64147  1  0
 65148  1  6
 66149  1  0
M  END
Download

PDB for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  O   UNK     0       4.393  10.821   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.997  10.654   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.711  12.018   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.085  13.527   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       5.229  11.762   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.980  13.200   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       5.454  10.238   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.308   9.290   0.000  0.00  0.00           O+0
HETATM    9  P   UNK     0       6.051   7.771   0.000  0.00  0.00           P+0
HETATM   10  O   UNK     0       7.850   7.873   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       7.807   8.821   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       7.238   6.790   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       7.377   5.090   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.564   4.108   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.307   2.590   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       6.863   2.053   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.677   3.035   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       7.181   3.774   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.629   2.317   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.047   3.480   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.304   4.998   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.117   5.980   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.978   7.680   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.792   8.661   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.444   9.998   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.405   8.380   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -0.151   7.598   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.592   7.399   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.818   8.035   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.259   9.653   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       5.004   7.053   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.279   5.189   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.183   3.522   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       3.347   1.912   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       4.600   0.569   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       1.709   1.346   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       0.548   0.188   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -0.956   0.841   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -1.901  -0.390   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -3.427  -0.189   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      10.243   3.764   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      11.753   3.076   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      11.863   1.502   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      13.145   3.983   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      14.463   3.024   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      15.862   3.764   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      17.005   2.671   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      18.473   3.198   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      18.747   4.713   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      20.196   5.234   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      20.470   6.750   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      19.294   7.744   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      17.845   7.224   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      16.669   8.219   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      16.943   9.734   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      18.392  10.255   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      18.666  11.770   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      17.491  12.765   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      17.764  14.281   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      16.589  15.275   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      16.863  16.791   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      15.687  17.786   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0       6.922   9.009   0.000  0.00  0.00           C+0
HETATM   64  O   UNK     0       8.143  10.300   0.000  0.00  0.00           O+0
HETATM   65  C   UNK     0       6.665   7.490   0.000  0.00  0.00           C+0
HETATM   66  O   UNK     0       8.247   6.472   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   25                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   63                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11   12                                             
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    9   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   41                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24    2   26                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   65                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39                                                            
CONECT   41   14   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61                                                            
CONECT   63    7   64   65                                                  
CONECT   64   63                                                            
CONECT   65   63   31   66                                                  
CONECT   66   65                                                            
MASTER        0    0    0    0    0    0    0    0   66    0  134    0
END
Download

3D PDB for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))

COMPND    HMDB0277580
HETATM    1  C1  UNL     1      13.928  -0.377   2.414  1.00  0.00           C  
HETATM    2  C2  UNL     1      12.535  -0.574   1.824  1.00  0.00           C  
HETATM    3  C3  UNL     1      12.073   0.679   1.119  1.00  0.00           C  
HETATM    4  C4  UNL     1      12.946   1.085  -0.007  1.00  0.00           C  
HETATM    5  C5  UNL     1      13.050   0.079  -1.141  1.00  0.00           C  
HETATM    6  C6  UNL     1      11.771  -0.194  -1.774  1.00  0.00           C  
HETATM    7  C7  UNL     1      11.181  -1.352  -1.897  1.00  0.00           C  
HETATM    8  C8  UNL     1      11.750  -2.592  -1.395  1.00  0.00           C  
HETATM    9  C9  UNL     1      11.087  -3.363  -0.372  1.00  0.00           C  
HETATM   10  C10 UNL     1      10.033  -3.150   0.308  1.00  0.00           C  
HETATM   11  C11 UNL     1       9.093  -2.000   0.290  1.00  0.00           C  
HETATM   12  C12 UNL     1       7.721  -2.446  -0.026  1.00  0.00           C  
HETATM   13  C13 UNL     1       6.931  -2.006  -0.966  1.00  0.00           C  
HETATM   14  C14 UNL     1       7.275  -0.953  -1.893  1.00  0.00           C  
HETATM   15  C15 UNL     1       6.483   0.279  -1.937  1.00  0.00           C  
HETATM   16  C16 UNL     1       5.501   0.626  -1.185  1.00  0.00           C  
HETATM   17  C17 UNL     1       4.866  -0.038  -0.082  1.00  0.00           C  
HETATM   18  C18 UNL     1       4.916   0.813   1.209  1.00  0.00           C  
HETATM   19  C19 UNL     1       4.230   2.124   1.065  1.00  0.00           C  
HETATM   20  C20 UNL     1       2.794   1.975   0.728  1.00  0.00           C  
HETATM   21  O1  UNL     1       2.522   1.846  -0.511  1.00  0.00           O  
HETATM   22  O2  UNL     1       1.767   1.971   1.677  1.00  0.00           O  
HETATM   23  C21 UNL     1       0.452   1.826   1.225  1.00  0.00           C  
HETATM   24  C22 UNL     1      -0.418   3.019   1.553  1.00  0.00           C  
HETATM   25  O3  UNL     1      -1.468   2.756   2.419  1.00  0.00           O  
HETATM   26  C23 UNL     1      -2.774   3.191   2.365  1.00  0.00           C  
HETATM   27  O4  UNL     1      -3.338   3.854   3.268  1.00  0.00           O  
HETATM   28  C24 UNL     1      -3.570   2.854   1.160  1.00  0.00           C  
HETATM   29  C25 UNL     1      -3.468   3.864   0.056  1.00  0.00           C  
HETATM   30  C26 UNL     1      -3.016   3.175  -1.214  1.00  0.00           C  
HETATM   31  C27 UNL     1      -3.955   3.390  -2.359  1.00  0.00           C  
HETATM   32  C28 UNL     1      -5.198   2.542  -2.276  1.00  0.00           C  
HETATM   33  C29 UNL     1      -5.189   1.409  -3.279  1.00  0.00           C  
HETATM   34  C30 UNL     1      -5.048   0.046  -2.628  1.00  0.00           C  
HETATM   35  C31 UNL     1      -6.416  -0.569  -2.350  1.00  0.00           C  
HETATM   36  O5  UNL     1      -6.384  -1.842  -2.885  1.00  0.00           O  
HETATM   37  C32 UNL     1      -6.759  -0.555  -0.883  1.00  0.00           C  
HETATM   38  C33 UNL     1      -6.908  -1.888  -0.245  1.00  0.00           C  
HETATM   39  O6  UNL     1      -7.044  -2.919  -1.205  1.00  0.00           O  
HETATM   40  C34 UNL     1      -5.972  -2.258   0.835  1.00  0.00           C  
HETATM   41  C35 UNL     1      -6.488  -1.816   2.148  1.00  0.00           C  
HETATM   42  C36 UNL     1      -7.429  -0.901   2.300  1.00  0.00           C  
HETATM   43  C37 UNL     1      -7.897  -0.515   3.650  1.00  0.00           C  
HETATM   44  O7  UNL     1      -6.753  -0.163   4.423  1.00  0.00           O  
HETATM   45  C38 UNL     1      -8.857   0.576   3.778  1.00  0.00           C  
HETATM   46  C39 UNL     1     -10.209   0.529   3.217  1.00  0.00           C  
HETATM   47  C40 UNL     1     -10.271   0.326   1.742  1.00  0.00           C  
HETATM   48  C41 UNL     1     -11.745   0.399   1.271  1.00  0.00           C  
HETATM   49  C42 UNL     1     -12.499  -0.681   1.976  1.00  0.00           C  
HETATM   50  C43 UNL     1      -4.546  -1.897   0.752  1.00  0.00           C  
HETATM   51  O8  UNL     1      -4.036  -1.976   2.084  1.00  0.00           O  
HETATM   52  C44 UNL     1      -3.671  -2.665  -0.171  1.00  0.00           C  
HETATM   53  O9  UNL     1      -4.285  -3.316  -1.205  1.00  0.00           O  
HETATM   54  C45 UNL     1      -2.450  -1.836  -0.630  1.00  0.00           C  
HETATM   55  O10 UNL     1      -1.303  -2.290   0.032  1.00  0.00           O  
HETATM   56  P1  UNL     1      -0.045  -1.185  -0.128  1.00  0.00           P  
HETATM   57  O11 UNL     1      -0.531  -0.012  -0.940  1.00  0.00           O  
HETATM   58  O12 UNL     1       1.312  -1.903  -0.854  1.00  0.00           O  
HETATM   59  O13 UNL     1       0.472  -0.548   1.353  1.00  0.00           O  
HETATM   60  C46 UNL     1      -0.242   0.581   1.733  1.00  0.00           C  
HETATM   61  C47 UNL     1      -2.283  -1.934  -2.100  1.00  0.00           C  
HETATM   62  O14 UNL     1      -0.936  -2.283  -2.365  1.00  0.00           O  
HETATM   63  C48 UNL     1      -2.725  -0.823  -2.949  1.00  0.00           C  
HETATM   64  O15 UNL     1      -1.916  -0.855  -4.115  1.00  0.00           O  
HETATM   65  C49 UNL     1      -4.162  -0.879  -3.441  1.00  0.00           C  
HETATM   66  O16 UNL     1      -4.141  -0.296  -4.730  1.00  0.00           O  
HETATM   67  H1  UNL     1      14.159   0.714   2.346  1.00  0.00           H  
HETATM   68  H2  UNL     1      13.938  -0.621   3.494  1.00  0.00           H  
HETATM   69  H3  UNL     1      14.694  -1.005   1.926  1.00  0.00           H  
HETATM   70  H4  UNL     1      12.513  -1.459   1.177  1.00  0.00           H  
HETATM   71  H5  UNL     1      11.845  -0.755   2.671  1.00  0.00           H  
HETATM   72  H6  UNL     1      12.063   1.494   1.862  1.00  0.00           H  
HETATM   73  H7  UNL     1      11.011   0.521   0.821  1.00  0.00           H  
HETATM   74  H8  UNL     1      13.966   1.245   0.391  1.00  0.00           H  
HETATM   75  H9  UNL     1      12.552   2.024  -0.442  1.00  0.00           H  
HETATM   76  H10 UNL     1      13.658  -0.759  -0.818  1.00  0.00           H  
HETATM   77  H11 UNL     1      13.686   0.605  -1.926  1.00  0.00           H  
HETATM   78  H12 UNL     1      11.239   0.679  -2.200  1.00  0.00           H  
HETATM   79  H13 UNL     1      10.198  -1.409  -2.462  1.00  0.00           H  
HETATM   80  H14 UNL     1      11.830  -3.300  -2.313  1.00  0.00           H  
HETATM   81  H15 UNL     1      12.863  -2.483  -1.163  1.00  0.00           H  
HETATM   82  H16 UNL     1      11.628  -4.350  -0.145  1.00  0.00           H  
HETATM   83  H17 UNL     1       9.764  -3.968   1.050  1.00  0.00           H  
HETATM   84  H18 UNL     1       9.070  -1.669   1.399  1.00  0.00           H  
HETATM   85  H19 UNL     1       9.457  -1.115  -0.215  1.00  0.00           H  
HETATM   86  H20 UNL     1       7.325  -3.267   0.639  1.00  0.00           H  
HETATM   87  H21 UNL     1       5.930  -2.536  -1.083  1.00  0.00           H  
HETATM   88  H22 UNL     1       8.351  -0.668  -1.675  1.00  0.00           H  
HETATM   89  H23 UNL     1       7.358  -1.407  -2.929  1.00  0.00           H  
HETATM   90  H24 UNL     1       6.812   1.008  -2.767  1.00  0.00           H  
HETATM   91  H25 UNL     1       5.052   1.659  -1.443  1.00  0.00           H  
HETATM   92  H26 UNL     1       3.775  -0.235  -0.321  1.00  0.00           H  
HETATM   93  H27 UNL     1       5.253  -0.993   0.244  1.00  0.00           H  
HETATM   94  H28 UNL     1       5.961   0.973   1.462  1.00  0.00           H  
HETATM   95  H29 UNL     1       4.360   0.218   1.959  1.00  0.00           H  
HETATM   96  H30 UNL     1       4.743   2.780   0.303  1.00  0.00           H  
HETATM   97  H31 UNL     1       4.341   2.670   2.015  1.00  0.00           H  
HETATM   98  H32 UNL     1       0.477   1.734   0.119  1.00  0.00           H  
HETATM   99  H33 UNL     1      -0.701   3.506   0.609  1.00  0.00           H  
HETATM  100  H34 UNL     1       0.259   3.754   2.080  1.00  0.00           H  
HETATM  101  H35 UNL     1      -4.651   2.725   1.391  1.00  0.00           H  
HETATM  102  H36 UNL     1      -3.266   1.835   0.773  1.00  0.00           H  
HETATM  103  H37 UNL     1      -2.770   4.669   0.383  1.00  0.00           H  
HETATM  104  H38 UNL     1      -4.439   4.388  -0.104  1.00  0.00           H  
HETATM  105  H39 UNL     1      -2.807   2.083  -1.046  1.00  0.00           H  
HETATM  106  H40 UNL     1      -2.038   3.616  -1.494  1.00  0.00           H  
HETATM  107  H41 UNL     1      -4.274   4.452  -2.347  1.00  0.00           H  
HETATM  108  H42 UNL     1      -3.405   3.240  -3.301  1.00  0.00           H  
HETATM  109  H43 UNL     1      -5.248   2.125  -1.251  1.00  0.00           H  
HETATM  110  H44 UNL     1      -6.124   3.164  -2.389  1.00  0.00           H  
HETATM  111  H45 UNL     1      -4.376   1.590  -4.010  1.00  0.00           H  
HETATM  112  H46 UNL     1      -6.138   1.409  -3.888  1.00  0.00           H  
HETATM  113  H47 UNL     1      -4.577   0.195  -1.663  1.00  0.00           H  
HETATM  114  H48 UNL     1      -7.153   0.033  -2.940  1.00  0.00           H  
HETATM  115  H49 UNL     1      -7.047  -2.033  -3.567  1.00  0.00           H  
HETATM  116  H50 UNL     1      -7.725   0.052  -0.827  1.00  0.00           H  
HETATM  117  H51 UNL     1      -6.054   0.055  -0.285  1.00  0.00           H  
HETATM  118  H52 UNL     1      -7.947  -1.913   0.228  1.00  0.00           H  
HETATM  119  H53 UNL     1      -7.265  -3.773  -0.774  1.00  0.00           H  
HETATM  120  H54 UNL     1      -6.031  -3.414   0.927  1.00  0.00           H  
HETATM  121  H55 UNL     1      -6.096  -2.247   3.092  1.00  0.00           H  
HETATM  122  H56 UNL     1      -7.836  -0.390   1.451  1.00  0.00           H  
HETATM  123  H57 UNL     1      -8.281  -1.431   4.195  1.00  0.00           H  
HETATM  124  H58 UNL     1      -6.667   0.821   4.454  1.00  0.00           H  
HETATM  125  H59 UNL     1      -8.351   1.563   3.448  1.00  0.00           H  
HETATM  126  H60 UNL     1      -8.933   0.786   4.914  1.00  0.00           H  
HETATM  127  H61 UNL     1     -10.731   1.518   3.456  1.00  0.00           H  
HETATM  128  H62 UNL     1     -10.790  -0.260   3.770  1.00  0.00           H  
HETATM  129  H63 UNL     1      -9.709   1.006   1.121  1.00  0.00           H  
HETATM  130  H64 UNL     1      -9.982  -0.743   1.536  1.00  0.00           H  
HETATM  131  H65 UNL     1     -11.713   0.287   0.177  1.00  0.00           H  
HETATM  132  H66 UNL     1     -12.171   1.387   1.494  1.00  0.00           H  
HETATM  133  H67 UNL     1     -11.865  -1.512   2.280  1.00  0.00           H  
HETATM  134  H68 UNL     1     -12.993  -0.274   2.892  1.00  0.00           H  
HETATM  135  H69 UNL     1     -13.282  -1.074   1.290  1.00  0.00           H  
HETATM  136  H70 UNL     1      -4.435  -0.823   0.502  1.00  0.00           H  
HETATM  137  H71 UNL     1      -4.381  -1.250   2.634  1.00  0.00           H  
HETATM  138  H72 UNL     1      -3.214  -3.489   0.461  1.00  0.00           H  
HETATM  139  H73 UNL     1      -4.630  -4.182  -0.892  1.00  0.00           H  
HETATM  140  H74 UNL     1      -2.634  -0.824  -0.250  1.00  0.00           H  
HETATM  141  H75 UNL     1       1.843  -1.211  -1.347  1.00  0.00           H  
HETATM  142  H76 UNL     1      -0.212   0.689   2.860  1.00  0.00           H  
HETATM  143  H77 UNL     1      -1.307   0.558   1.491  1.00  0.00           H  
HETATM  144  H78 UNL     1      -2.846  -2.861  -2.431  1.00  0.00           H  
HETATM  145  H79 UNL     1      -0.850  -2.907  -3.106  1.00  0.00           H  
HETATM  146  H80 UNL     1      -2.604   0.207  -2.568  1.00  0.00           H  
HETATM  147  H81 UNL     1      -2.169  -0.035  -4.634  1.00  0.00           H  
HETATM  148  H82 UNL     1      -4.556  -1.892  -3.516  1.00  0.00           H  
HETATM  149  H83 UNL     1      -5.050  -0.198  -5.092  1.00  0.00           H  
CONECT    1    2   67   68   69
CONECT    2    3   70   71
CONECT    3    4   72   73
CONECT    4    5   74   75
CONECT    5    6   76   77
CONECT    6    7    7   78
CONECT    7    8   79
CONECT    8    9   80   81
CONECT    9   10   10   82
CONECT   10   11   83
CONECT   11   12   84   85
CONECT   12   13   13   86
CONECT   13   14   87
CONECT   14   15   88   89
CONECT   15   16   16   90
CONECT   16   17   91
CONECT   17   18   92   93
CONECT   18   19   94   95
CONECT   19   20   96   97
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   60   98
CONECT   24   25   99  100
CONECT   25   26
CONECT   26   27   27   28
CONECT   28   29  101  102
CONECT   29   30  103  104
CONECT   30   31  105  106
CONECT   31   32  107  108
CONECT   32   33  109  110
CONECT   33   34  111  112
CONECT   34   35   65  113
CONECT   35   36   37  114
CONECT   36  115
CONECT   37   38  116  117
CONECT   38   39   40  118
CONECT   39  119
CONECT   40   41   50  120
CONECT   41   42   42  121
CONECT   42   43  122
CONECT   43   44   45  123
CONECT   44  124
CONECT   45   46  125  126
CONECT   46   47  127  128
CONECT   47   48  129  130
CONECT   48   49  131  132
CONECT   49  133  134  135
CONECT   50   51   52  136
CONECT   51  137
CONECT   52   53   54  138
CONECT   53  139
CONECT   54   55   61  140
CONECT   55   56
CONECT   56   57   57   58   59
CONECT   58  141
CONECT   59   60
CONECT   60  142  143
CONECT   61   62   63  144
CONECT   62  145
CONECT   63   64   65  146
CONECT   64  147
CONECT   65   66  148
CONECT   66  149
END
Download

SMILES for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))

CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)O[C@@H]1COC(=O)CCCCCC[C@H]2[C@@H](O)C[C@@H](O)[C@H](\C=C\[C@@H](O)CCCCC)[C@@H](O)[C@@H](O)[C@@H](OP(O)(=O)OC1)[C@H](O)[C@@H](O)[C@@H]2O
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INCHI for HMDB0277580 (PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)))

InChI=1S/C49H83O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-26-30-43(54)64-37-34-62-42(53)29-25-22-21-24-28-38-40(51)33-41(52)39(32-31-36(50)27-23-6-4-2)45(56)47(58)49(48(59)46(57)44(38)55)65-66(60,61)63-35-37/h9-10,12-13,15-16,18-19,31-32,36-41,44-52,55-59H,3-8,11,14,17,20-30,33-35H2,1-2H3,(H,60,61)/b10-9-,13-12-,16-15-,19-18-,32-31+/t36-,37+,38-,39-,40-,41+,44+,45+,46-,47+,48+,49+/m0/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-Octahydroxy-20-[(3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3-phosphabicyclo[14.6.3]pentacosan-6-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoic acidHMDB
Chemical FormulaC49H83O16P
Average Molecular Weight959.161
Monoisotopic Molecular Weight958.541873591
IUPAC Name(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate
Traditional Name(1R,6R,16S,17S,19R,20S,21R,22R,23R,24S,25R)-3,17,19,21,22,23,24,25-octahydroxy-20-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3,9-dioxo-2,4,8-trioxa-3lambda5-phosphabicyclo[14.6.3]pentacosan-6-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate
CAS Registry NumberNot Available
SMILES
CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)O[C@@H]1COC(=O)CCCCCC[C@H]2[C@@H](O)C[C@@H](O)[C@H](\C=C\[C@@H](O)CCCCC)[C@@H](O)[C@@H](O)[C@@H](OP(O)(=O)OC1)[C@H](O)[C@@H](O)[C@@H]2O
InChI Identifier
InChI=1S/C49H83O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-26-30-43(54)64-37-34-62-42(53)29-25-22-21-24-28-38-40(51)33-41(52)39(32-31-36(50)27-23-6-4-2)45(56)47(58)49(48(59)46(57)44(38)55)65-66(60,61)63-35-37/h9-10,12-13,15-16,18-19,31-32,36-41,44-52,55-59H,3-8,11,14,17,20-30,33-35H2,1-2H3,(H,60,61)/b10-9-,13-12-,16-15-,19-18-,32-31+/t36-,37+,38-,39-,40-,41+,44+,45+,46-,47+,48+,49+/m0/s1
InChI KeyLLMQNHDMJDFGGL-OLPSCLEISA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as other hydroxyeicosapolyenoic acids. These are hydroxyeicosapolyenoic acids which do not belong to the Hydroxyeicosapentaenoic acids, the Hydroxyeicosatetraenoic acids, or the Hydroxyeicosatrienoic acids.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassEicosanoids
Direct ParentOther hydroxyeicosapolyenoic acids
Alternative Parents
Substituents
  • Hydroxyeicosapolyenoic acid
  • Glycerophospholipid
  • Fatty acid ester
  • Organic phosphoric acid derivative
  • Dicarboxylic acid or derivatives
  • Cyclitol or derivatives
  • Secondary alcohol
  • Lactone
  • Carboxylic acid ester
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Health effect
Disposition
Biological locationSource
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.22ALOGPS
logP5.81ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)1.83ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area270.2 ŲChemAxon
Rotatable Bond Count22ChemAxon
Refractivity255.82 m³·mol⁻¹ChemAxon
Polarizability104.19 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+303.70332859911
AllCCS[M+H-H2O]+304.11332859911
AllCCS[M+Na]+303.1632859911
AllCCS[M+NH4]+303.28732859911
AllCCS[M-H]-298.67432859911
AllCCS[M+Na-2H]-305.59332859911
AllCCS[M+HCOO]-313.14432859911
DeepCCS[M+H]+301.22130932474
DeepCCS[M-H]-299.56830932474
DeepCCS[M-2H]-333.60130932474
DeepCCS[M+Na]+307.37830932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) 10V, Positive-QTOFsplash10-0a4l-0000000009-58b39ba30da13f469e6a2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) 20V, Positive-QTOFsplash10-0006-2000000069-f26e3c56af66fefd194b2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) 40V, Positive-QTOFsplash10-0ab9-3300009020-f83ec64028bae22bc5e22021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) 10V, Negative-QTOFsplash10-0a4i-0000000009-1280c6af257a45fcf3612021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) 20V, Negative-QTOFsplash10-0pbi-0001008009-60ee68b8501c45944f1e2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(PGF1alpha/20:4(5Z,8Z,11Z,14Z)) 40V, Negative-QTOFsplash10-0udi-0000009000-150fd0e9e99851bcf97f2021-10-19Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound156980932
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available