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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-13 16:06:05 UTC

Update Date

2022-11-30 20:03:01 UTC

HMDB ID

HMDB0281136

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PS(16:0/PGD2)

Description

PS(16:0/PGD2) is an oxidized phosphatidylserine (PS). Oxidized phosphatidylserines are glycerophospholipids in which a phosphorylserine moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized phosphatidylserines belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, phosphatidylserines can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. PS(16:0/PGD2), in particular, consists of one chain of one hexadecanoyl at the C-1 position and one chain of Prostaglandin D2 at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized PSs can be synthesized via three different routes. In one route, the oxidized PS is synthetized de novo following the same mechanisms as for PSs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the PS backbone, mainly through the action of LOX (PMID: 33329396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309132118062D          

 57 57  0  0  1  0            999 V2000
   11.1419  -20.4587    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.1419  -21.2837    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.4274  -21.6962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -21.2837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -20.4587    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    8.8879  -20.4587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5379  -20.4587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -19.6337    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4274  -19.2212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4274  -18.3962    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.7129  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9985  -18.3962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2840  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2840  -17.1587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5695  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8551  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1406  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4261  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7116  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9972  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2827  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5682  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8538  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1393  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4248  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2897  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0041  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7186  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4331  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1419  -17.9837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -19.2212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5708  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2853  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9998  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9998  -17.1587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7142  -16.7462    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4287  -17.1587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1432  -16.7462    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.2294  -15.9257    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.6163  -15.3737    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0364  -15.7542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4489  -16.4686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2694  -16.5549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.8969  -17.0817    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   17.0684  -17.8887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8530  -18.1436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.0245  -18.9506    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   17.4114  -19.5027    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.8092  -19.2056    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9807  -20.0125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7653  -20.2675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.9368  -21.0744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.7215  -21.3294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -21.6962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -22.5212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5708  -21.2837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 10 30  1  1  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 39 38  1  1  0  0  0
 39 40  1  0  0  0  0
 40 41  1  1  0  0  0
 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 39 45  1  0  0  0  0
 45 46  1  6  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  6  0  0  0
 48 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
  2 55  1  0  0  0  0
 55 56  1  0  0  0  0
 55 57  2  0  0  0  0
M  END

HMDB0281136
     RDKit          3D
PS(16:0/PGD2)
131131  0  0  0  0  0  0  0  0999 V2000
   11.6153    6.5908   -0.5499 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3191    5.0976   -0.7111 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1709    4.7668   -2.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8969    3.3060   -2.3273 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6112    2.8546   -1.6411 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5227    1.3638   -1.8945 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3126    0.7087   -1.3192 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1628    0.8520    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2741    0.3281    0.9771 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7098   -1.0632    0.9086 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8301   -2.1867    1.2804 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6315   -2.3605    0.4331 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8197   -3.6018    0.9037 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3587   -3.4226    2.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4524   -2.2468    2.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1670   -2.3843    1.7521 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9854   -3.4720    1.1708 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2640   -1.3746    1.7007 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0290   -1.2821    1.0991 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9407   -2.0216    1.7529 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0902   -3.5037    1.7982 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1173   -4.0101    0.5019 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2599   -5.6983    0.5167 P   0  0  0  0  0  5  0  0  0  0  0  0
    0.0064   -6.2189    1.2318 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6290   -6.2398    1.3064 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1421   -6.2460   -1.0753 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0594   -7.2942   -1.2822 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9001   -7.7495   -2.7103 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8459   -8.8310   -2.9236 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1285   -6.6040   -3.6042 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0084   -6.5354   -4.4840 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2914   -5.4971   -3.4586 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3225   -1.8134    1.0608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4040   -1.2315    1.7114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2224   -0.8978    2.9184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7109   -1.0019    1.0617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6483   -0.4049    2.0688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0392   -0.1595    1.4772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9423    0.4170    2.4774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5659    1.5550    2.4068 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4328    2.4423    1.2576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8512    2.5904    0.6732 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.8377    3.4952   -0.5204 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8551    4.4712   -0.3557 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6184    2.6320   -1.7155 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6889    1.2286   -1.2366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3017    0.2908   -1.9156 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2814    1.2575    0.1203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.7726    1.2201    0.1036 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4742    1.0613   -0.9971 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9588    1.0187   -1.0410 C   0  0  1  0  0  0  0  0  0  0  0  0
  -12.2989   -0.3446   -0.8774 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6071    1.7770    0.0702 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2453    3.2249    0.0567 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6545    3.9125   -1.2276 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2191    5.3726   -1.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9564    5.9150    0.1362 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6997    7.1404   -0.8388 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4831    6.8305   -1.1784 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8239    6.7574    0.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3712    4.8802   -0.1809 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1653    4.5091   -0.3058 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0836    5.0359   -2.7381 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3079    5.3429   -2.6239 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7839    3.1094   -3.4244 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7138    2.6752   -1.9566 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6719    3.0485   -0.5467 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7366    3.3489   -2.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4230    0.9306   -1.3877 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5870    1.2398   -2.9952 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4058    1.1727   -1.7888 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2487   -0.3677   -1.5596 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1479    0.6181    0.4865 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2082    2.0069    0.3284 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1833    1.0400    0.9310 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9623    0.5067    2.0741 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6615   -1.1965    1.5517 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1561   -1.3158   -0.1213 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4105   -3.1717    1.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5755   -2.1793    2.3820 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8391   -2.5660   -0.6250 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8932   -1.5544    0.4909 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0237   -3.7182    0.1573 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5035   -4.4737    0.8481 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7384   -4.3368    2.5736 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1540   -3.4041    3.0630 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9328   -1.2922    2.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1554   -2.2691    3.6036 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7124   -0.1957    0.9985 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1925   -1.6635    0.0239 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7655   -1.6083    2.7912 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8149   -3.9121    2.4936 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0535   -3.8721    2.1797 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6872   -5.7573    2.1611 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0847   -6.9285   -1.0859 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8205   -8.0772   -0.5479 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8606   -8.1307   -2.8807 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6425   -9.5746   -2.2353 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8004   -8.4337   -2.8364 H   0  0  0  0  0  0  0  0  0  0  0  0
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 57131  1  0
M  END


  Mrv1652309132118062D          

 57 57  0  0  1  0            999 V2000
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   11.1419  -21.2837    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.4274  -21.6962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.5379  -20.4587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -19.6337    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.4331  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1419  -17.9837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   11.8564  -19.2212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5708  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2853  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   17.0684  -17.8887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8530  -18.1436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   12.5708  -21.2837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
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  5  7  2  0  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
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 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
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 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
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 25 26  1  0  0  0  0
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 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 10 30  1  1  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 39 38  1  1  0  0  0
 39 40  1  0  0  0  0
 40 41  1  1  0  0  0
 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 39 45  1  0  0  0  0
 45 46  1  6  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  6  0  0  0
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 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
  2 55  1  0  0  0  0
 55 56  1  0  0  0  0
 55 57  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0281136

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C42H74NO13P/c1-3-5-7-8-9-10-11-12-13-14-15-16-21-25-40(47)53-30-34(31-54-57(51,52)55-32-37(43)42(49)50)56-41(48)26-22-18-17-20-24-35-36(39(46)29-38(35)45)28-27-33(44)23-19-6-4-2/h17,20,27-28,33-38,44-45H,3-16,18-19,21-26,29-32,43H2,1-2H3,(H,49,50)(H,51,52)/b20-17-,28-27+/t33-,34+,35+,36+,37-,38-/m0/s1

> <INCHI_KEY>
ZIVWMBZXONGZTM-GIAYAOODSA-N

> <FORMULA>
C42H74NO13P

> <MOLECULAR_WEIGHT>
832.022

> <EXACT_MASS>
831.489778445

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
131

> <JCHEM_AVERAGE_POLARIZABILITY>
94.74972294664988

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-3-({[(2R)-3-(hexadecanoyloxy)-2-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propoxy](hydroxy)phosphoryl}oxy)propanoic acid

> <ALOGPS_LOGP>
2.55

> <JCHEM_LOGP>
6.46208735910438

> <ALOGPS_LOGS>
-6.41

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
2.178468785385784

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.4683346193003688

> <JCHEM_PKA_STRONGEST_BASIC>
9.376593716888722

> <JCHEM_POLAR_SURFACE_AREA>
229.20999999999998

> <JCHEM_REFRACTIVITY>
219.18530000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
38

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.25e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-3-{[(2R)-3-(hexadecanoyloxy)-2-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propoxy(hydroxy)phosphoryl]oxy}propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0281136
     RDKit          3D
PS(16:0/PGD2)
131131  0  0  0  0  0  0  0  0999 V2000
   11.6153    6.5908   -0.5499 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3191    5.0976   -0.7111 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1709    4.7668   -2.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8969    3.3060   -2.3273 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6112    2.8546   -1.6411 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5227    1.3638   -1.8945 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3126    0.7087   -1.3192 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1628    0.8520    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2741    0.3281    0.9771 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7098   -1.0632    0.9086 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8301   -2.1867    1.2804 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6315   -2.3605    0.4331 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8197   -3.6018    0.9037 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3587   -3.4226    2.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4524   -2.2468    2.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1670   -2.3843    1.7521 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9854   -3.4720    1.1708 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2640   -1.3746    1.7007 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0290   -1.2821    1.0991 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9407   -2.0216    1.7529 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0902   -3.5037    1.7982 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6290   -6.2398    1.3064 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  N   UNK     0      20.798 -38.190   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      20.798 -39.730   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      19.465 -40.500   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      18.131 -39.730   0.000  0.00  0.00           O+0
HETATM    5  P   UNK     0      18.131 -38.190   0.000  0.00  0.00           P+0
HETATM    6  O   UNK     0      16.591 -38.190   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      19.671 -38.190   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      18.131 -36.650   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      19.465 -35.880   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      19.465 -34.340   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      18.131 -33.570   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      16.797 -34.340   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      15.463 -33.570   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      15.463 -32.030   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      14.130 -34.340   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.796 -33.570   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      11.462 -34.340   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.129 -33.570   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.795 -34.340   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.461 -33.570   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.128 -34.340   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.794 -33.570   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.460 -34.340   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.127 -33.570   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.793 -34.340   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.541 -33.570   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.874 -34.340   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -3.208 -33.570   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -4.542 -34.340   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      20.798 -33.570   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      22.132 -34.340   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      22.132 -35.880   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      23.466 -33.570   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      24.799 -34.340   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      26.133 -33.570   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      26.133 -32.030   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      27.467 -31.260   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      28.800 -32.030   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      30.134 -31.260   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      30.295 -29.728   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      29.150 -28.698   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      31.801 -29.408   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      32.571 -30.741   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      34.103 -30.902   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      31.541 -31.886   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      31.861 -33.392   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      33.326 -33.868   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      33.646 -35.374   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      32.501 -36.405   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      35.110 -35.850   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      35.431 -37.357   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      36.895 -37.833   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      37.215 -39.339   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      38.680 -39.815   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      22.132 -40.500   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0      22.132 -42.040   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0      23.466 -39.730   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   55                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7    8                                             
CONECT    6    5                                                            
CONECT    7    5                                                            
CONECT    8    5    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   30                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28                                                            
CONECT   30   10   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   45                                                  
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43                                                       
CONECT   43   42   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   39   46                                                  
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53                                                            
CONECT   55    2   56   57                                                  
CONECT   56   55                                                            
CONECT   57   55                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  114    0
END

COMPND    HMDB0281136
HETATM    1  C1  UNL     1      11.615   6.591  -0.550  1.00  0.00           C  
HETATM    2  C2  UNL     1      11.319   5.098  -0.711  1.00  0.00           C  
HETATM    3  C3  UNL     1      11.171   4.767  -2.172  1.00  0.00           C  
HETATM    4  C4  UNL     1      10.897   3.306  -2.327  1.00  0.00           C  
HETATM    5  C5  UNL     1       9.611   2.855  -1.641  1.00  0.00           C  
HETATM    6  C6  UNL     1       9.523   1.364  -1.895  1.00  0.00           C  
HETATM    7  C7  UNL     1       8.313   0.709  -1.319  1.00  0.00           C  
HETATM    8  C8  UNL     1       8.163   0.852   0.168  1.00  0.00           C  
HETATM    9  C9  UNL     1       9.274   0.328   0.977  1.00  0.00           C  
HETATM   10  C10 UNL     1       9.710  -1.063   0.909  1.00  0.00           C  
HETATM   11  C11 UNL     1       8.830  -2.187   1.280  1.00  0.00           C  
HETATM   12  C12 UNL     1       7.632  -2.361   0.433  1.00  0.00           C  
HETATM   13  C13 UNL     1       6.820  -3.602   0.904  1.00  0.00           C  
HETATM   14  C14 UNL     1       6.359  -3.423   2.320  1.00  0.00           C  
HETATM   15  C15 UNL     1       5.452  -2.247   2.523  1.00  0.00           C  
HETATM   16  C16 UNL     1       4.167  -2.384   1.752  1.00  0.00           C  
HETATM   17  O1  UNL     1       3.985  -3.472   1.171  1.00  0.00           O  
HETATM   18  O2  UNL     1       3.264  -1.375   1.701  1.00  0.00           O  
HETATM   19  C17 UNL     1       2.029  -1.282   1.099  1.00  0.00           C  
HETATM   20  C18 UNL     1       0.941  -2.022   1.753  1.00  0.00           C  
HETATM   21  C19 UNL     1       1.090  -3.504   1.798  1.00  0.00           C  
HETATM   22  O3  UNL     1       1.117  -4.010   0.502  1.00  0.00           O  
HETATM   23  P1  UNL     1       1.260  -5.698   0.517  1.00  0.00           P  
HETATM   24  O4  UNL     1       0.006  -6.219   1.232  1.00  0.00           O  
HETATM   25  O5  UNL     1       2.629  -6.240   1.306  1.00  0.00           O  
HETATM   26  O6  UNL     1       1.142  -6.246  -1.075  1.00  0.00           O  
HETATM   27  C20 UNL     1       2.059  -7.294  -1.282  1.00  0.00           C  
HETATM   28  C21 UNL     1       1.900  -7.749  -2.710  1.00  0.00           C  
HETATM   29  N1  UNL     1       2.846  -8.831  -2.924  1.00  0.00           N  
HETATM   30  C22 UNL     1       2.128  -6.604  -3.604  1.00  0.00           C  
HETATM   31  O7  UNL     1       3.008  -6.535  -4.484  1.00  0.00           O  
HETATM   32  O8  UNL     1       1.291  -5.497  -3.459  1.00  0.00           O  
HETATM   33  O9  UNL     1      -0.323  -1.813   1.061  1.00  0.00           O  
HETATM   34  C23 UNL     1      -1.404  -1.232   1.711  1.00  0.00           C  
HETATM   35  O10 UNL     1      -1.222  -0.898   2.918  1.00  0.00           O  
HETATM   36  C24 UNL     1      -2.711  -1.002   1.062  1.00  0.00           C  
HETATM   37  C25 UNL     1      -3.648  -0.405   2.069  1.00  0.00           C  
HETATM   38  C26 UNL     1      -5.039  -0.159   1.477  1.00  0.00           C  
HETATM   39  C27 UNL     1      -5.942   0.417   2.477  1.00  0.00           C  
HETATM   40  C28 UNL     1      -6.566   1.555   2.407  1.00  0.00           C  
HETATM   41  C29 UNL     1      -6.433   2.442   1.258  1.00  0.00           C  
HETATM   42  C30 UNL     1      -7.851   2.590   0.673  1.00  0.00           C  
HETATM   43  C31 UNL     1      -7.838   3.495  -0.520  1.00  0.00           C  
HETATM   44  O11 UNL     1      -6.855   4.471  -0.356  1.00  0.00           O  
HETATM   45  C32 UNL     1      -7.618   2.632  -1.715  1.00  0.00           C  
HETATM   46  C33 UNL     1      -7.689   1.229  -1.237  1.00  0.00           C  
HETATM   47  O12 UNL     1      -7.302   0.291  -1.916  1.00  0.00           O  
HETATM   48  C34 UNL     1      -8.281   1.257   0.120  1.00  0.00           C  
HETATM   49  C35 UNL     1      -9.773   1.220   0.104  1.00  0.00           C  
HETATM   50  C36 UNL     1     -10.474   1.061  -0.997  1.00  0.00           C  
HETATM   51  C37 UNL     1     -11.959   1.019  -1.041  1.00  0.00           C  
HETATM   52  O13 UNL     1     -12.299  -0.345  -0.877  1.00  0.00           O  
HETATM   53  C38 UNL     1     -12.607   1.777   0.070  1.00  0.00           C  
HETATM   54  C39 UNL     1     -12.245   3.225   0.057  1.00  0.00           C  
HETATM   55  C40 UNL     1     -12.654   3.912  -1.228  1.00  0.00           C  
HETATM   56  C41 UNL     1     -12.219   5.373  -1.067  1.00  0.00           C  
HETATM   57  C42 UNL     1     -12.956   5.915   0.136  1.00  0.00           C  
HETATM   58  H1  UNL     1      10.700   7.140  -0.839  1.00  0.00           H  
HETATM   59  H2  UNL     1      12.483   6.831  -1.178  1.00  0.00           H  
HETATM   60  H3  UNL     1      11.824   6.757   0.535  1.00  0.00           H  
HETATM   61  H4  UNL     1      10.371   4.880  -0.181  1.00  0.00           H  
HETATM   62  H5  UNL     1      12.165   4.509  -0.306  1.00  0.00           H  
HETATM   63  H6  UNL     1      12.084   5.036  -2.738  1.00  0.00           H  
HETATM   64  H7  UNL     1      10.308   5.343  -2.624  1.00  0.00           H  
HETATM   65  H8  UNL     1      10.784   3.109  -3.424  1.00  0.00           H  
HETATM   66  H9  UNL     1      11.714   2.675  -1.957  1.00  0.00           H  
HETATM   67  H10 UNL     1       9.672   3.049  -0.547  1.00  0.00           H  
HETATM   68  H11 UNL     1       8.737   3.349  -2.096  1.00  0.00           H  
HETATM   69  H12 UNL     1      10.423   0.931  -1.388  1.00  0.00           H  
HETATM   70  H13 UNL     1       9.587   1.240  -2.995  1.00  0.00           H  
HETATM   71  H14 UNL     1       7.406   1.173  -1.789  1.00  0.00           H  
HETATM   72  H15 UNL     1       8.249  -0.368  -1.560  1.00  0.00           H  
HETATM   73  H16 UNL     1       7.148   0.618   0.487  1.00  0.00           H  
HETATM   74  H17 UNL     1       8.208   2.007   0.328  1.00  0.00           H  
HETATM   75  H18 UNL     1      10.183   1.040   0.931  1.00  0.00           H  
HETATM   76  H19 UNL     1       8.962   0.507   2.074  1.00  0.00           H  
HETATM   77  H20 UNL     1      10.662  -1.196   1.552  1.00  0.00           H  
HETATM   78  H21 UNL     1      10.156  -1.316  -0.121  1.00  0.00           H  
HETATM   79  H22 UNL     1       9.411  -3.172   1.200  1.00  0.00           H  
HETATM   80  H23 UNL     1       8.576  -2.179   2.382  1.00  0.00           H  
HETATM   81  H24 UNL     1       7.839  -2.566  -0.625  1.00  0.00           H  
HETATM   82  H25 UNL     1       6.893  -1.554   0.491  1.00  0.00           H  
HETATM   83  H26 UNL     1       6.024  -3.718   0.157  1.00  0.00           H  
HETATM   84  H27 UNL     1       7.504  -4.474   0.848  1.00  0.00           H  
HETATM   85  H28 UNL     1       5.738  -4.337   2.574  1.00  0.00           H  
HETATM   86  H29 UNL     1       7.154  -3.404   3.063  1.00  0.00           H  
HETATM   87  H30 UNL     1       5.933  -1.292   2.267  1.00  0.00           H  
HETATM   88  H31 UNL     1       5.155  -2.269   3.604  1.00  0.00           H  
HETATM   89  H32 UNL     1       1.712  -0.196   0.999  1.00  0.00           H  
HETATM   90  H33 UNL     1       2.192  -1.664   0.024  1.00  0.00           H  
HETATM   91  H34 UNL     1       0.766  -1.608   2.791  1.00  0.00           H  
HETATM   92  H35 UNL     1       1.815  -3.912   2.494  1.00  0.00           H  
HETATM   93  H36 UNL     1       0.054  -3.872   2.180  1.00  0.00           H  
HETATM   94  H37 UNL     1       2.687  -5.757   2.161  1.00  0.00           H  
HETATM   95  H38 UNL     1       3.085  -6.928  -1.086  1.00  0.00           H  
HETATM   96  H39 UNL     1       1.821  -8.077  -0.548  1.00  0.00           H  
HETATM   97  H40 UNL     1       0.861  -8.131  -2.881  1.00  0.00           H  
HETATM   98  H41 UNL     1       2.642  -9.575  -2.235  1.00  0.00           H  
HETATM   99  H42 UNL     1       3.800  -8.434  -2.836  1.00  0.00           H  
HETATM  100  H43 UNL     1       0.306  -5.511  -3.699  1.00  0.00           H  
HETATM  101  H44 UNL     1      -2.543  -0.231   0.259  1.00  0.00           H  
HETATM  102  H45 UNL     1      -3.059  -1.932   0.622  1.00  0.00           H  
HETATM  103  H46 UNL     1      -3.692  -1.058   2.945  1.00  0.00           H  
HETATM  104  H47 UNL     1      -3.267   0.572   2.413  1.00  0.00           H  
HETATM  105  H48 UNL     1      -4.994   0.321   0.508  1.00  0.00           H  
HETATM  106  H49 UNL     1      -5.430  -1.203   1.262  1.00  0.00           H  
HETATM  107  H50 UNL     1      -6.108  -0.192   3.391  1.00  0.00           H  
HETATM  108  H51 UNL     1      -7.218   1.887   3.223  1.00  0.00           H  
HETATM  109  H52 UNL     1      -5.709   2.200   0.497  1.00  0.00           H  
HETATM  110  H53 UNL     1      -6.174   3.475   1.639  1.00  0.00           H  
HETATM  111  H54 UNL     1      -8.543   2.968   1.455  1.00  0.00           H  
HETATM  112  H55 UNL     1      -8.849   3.941  -0.614  1.00  0.00           H  
HETATM  113  H56 UNL     1      -6.292   4.476  -1.167  1.00  0.00           H  
HETATM  114  H57 UNL     1      -6.579   2.835  -2.107  1.00  0.00           H  
HETATM  115  H58 UNL     1      -8.360   2.774  -2.522  1.00  0.00           H  
HETATM  116  H59 UNL     1      -7.882   0.413   0.750  1.00  0.00           H  
HETATM  117  H60 UNL     1     -10.281   1.327   1.046  1.00  0.00           H  
HETATM  118  H61 UNL     1      -9.894   0.956  -1.931  1.00  0.00           H  
HETATM  119  H62 UNL     1     -12.347   1.295  -2.043  1.00  0.00           H  
HETATM  120  H63 UNL     1     -13.211  -0.529  -1.169  1.00  0.00           H  
HETATM  121  H64 UNL     1     -12.356   1.320   1.047  1.00  0.00           H  
HETATM  122  H65 UNL     1     -13.723   1.695  -0.009  1.00  0.00           H  
HETATM  123  H66 UNL     1     -12.802   3.725   0.889  1.00  0.00           H  
HETATM  124  H67 UNL     1     -11.174   3.377   0.213  1.00  0.00           H  
HETATM  125  H68 UNL     1     -12.116   3.512  -2.100  1.00  0.00           H  
HETATM  126  H69 UNL     1     -13.749   3.927  -1.360  1.00  0.00           H  
HETATM  127  H70 UNL     1     -12.503   5.888  -2.000  1.00  0.00           H  
HETATM  128  H71 UNL     1     -11.125   5.354  -0.920  1.00  0.00           H  
HETATM  129  H72 UNL     1     -13.895   5.357   0.318  1.00  0.00           H  
HETATM  130  H73 UNL     1     -12.348   5.833   1.061  1.00  0.00           H  
HETATM  131  H74 UNL     1     -13.212   6.982  -0.050  1.00  0.00           H  
CONECT    1    2   58   59   60
CONECT    2    3   61   62
CONECT    3    4   63   64
CONECT    4    5   65   66
CONECT    5    6   67   68
CONECT    6    7   69   70
CONECT    7    8   71   72
CONECT    8    9   73   74
CONECT    9   10   75   76
CONECT   10   11   77   78
CONECT   11   12   79   80
CONECT   12   13   81   82
CONECT   13   14   83   84
CONECT   14   15   85   86
CONECT   15   16   87   88
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   89   90
CONECT   20   21   33   91
CONECT   21   22   92   93
CONECT   22   23
CONECT   23   24   24   25   26
CONECT   25   94
CONECT   26   27
CONECT   27   28   95   96
CONECT   28   29   30   97
CONECT   29   98   99
CONECT   30   31   31   32
CONECT   32  100
CONECT   33   34
CONECT   34   35   35   36
CONECT   36   37  101  102
CONECT   37   38  103  104
CONECT   38   39  105  106
CONECT   39   40   40  107
CONECT   40   41  108
CONECT   41   42  109  110
CONECT   42   43   48  111
CONECT   43   44   45  112
CONECT   44  113
CONECT   45   46  114  115
CONECT   46   47   47   48
CONECT   48   49  116
CONECT   49   50   50  117
CONECT   50   51  118
CONECT   51   52   53  119
CONECT   52  120
CONECT   53   54  121  122
CONECT   54   55  123  124
CONECT   55   56  125  126
CONECT   56   57  127  128
CONECT   57  129  130  131
END

HMDB0281136
     RDKit          3D
PS(16:0/PGD2)
131131  0  0  0  0  0  0  0  0999 V2000
   11.6153    6.5908   -0.5499 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3191    5.0976   -0.7111 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1709    4.7668   -2.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8969    3.3060   -2.3273 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6112    2.8546   -1.6411 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5227    1.3638   -1.8945 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3126    0.7087   -1.3192 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1628    0.8520    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2741    0.3281    0.9771 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7098   -1.0632    0.9086 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8301   -2.1867    1.2804 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6315   -2.3605    0.4331 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8197   -3.6018    0.9037 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3587   -3.4226    2.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4524   -2.2468    2.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1670   -2.3843    1.7521 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9854   -3.4720    1.1708 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2640   -1.3746    1.7007 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0290   -1.2821    1.0991 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9407   -2.0216    1.7529 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0902   -3.5037    1.7982 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1173   -4.0101    0.5019 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2599   -5.6983    0.5167 P   0  0  0  0  0  5  0  0  0  0  0  0
    0.0064   -6.2189    1.2318 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6290   -6.2398    1.3064 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1421   -6.2460   -1.0753 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0594   -7.2942   -1.2822 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9001   -7.7495   -2.7103 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8459   -8.8310   -2.9236 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1285   -6.6040   -3.6042 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0084   -6.5354   -4.4840 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2914   -5.4971   -3.4586 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3225   -1.8134    1.0608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4040   -1.2315    1.7114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2224   -0.8978    2.9184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7109   -1.0019    1.0617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6483   -0.4049    2.0688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0392   -0.1595    1.4772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9423    0.4170    2.4774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5659    1.5550    2.4068 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4328    2.4423    1.2576 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.8377    3.4952   -0.5204 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8551    4.4712   -0.3557 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6184    2.6320   -1.7155 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6889    1.2286   -1.2366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3017    0.2908   -1.9156 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2814    1.2575    0.1203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.7726    1.2201    0.1036 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4742    1.0613   -0.9971 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9588    1.0187   -1.0410 C   0  0  1  0  0  0  0  0  0  0  0  0
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  -12.6071    1.7770    0.0702 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2453    3.2249    0.0567 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6545    3.9125   -1.2276 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2191    5.3726   -1.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9564    5.9150    0.1362 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6997    7.1404   -0.8388 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4831    6.8305   -1.1784 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8239    6.7574    0.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3712    4.8802   -0.1809 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1653    4.5091   -0.3058 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0836    5.0359   -2.7381 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3079    5.3429   -2.6239 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7839    3.1094   -3.4244 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7138    2.6752   -1.9566 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.1076   -0.1917    3.3914 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -8.3597    2.7740   -2.5220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8818    0.4129    0.7498 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2807    1.3270    1.0457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8941    0.9565   -1.9311 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3472    1.2950   -2.0430 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2111   -0.5287   -1.1688 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.1162    3.5124   -2.0997 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7490    3.9273   -1.3596 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5031    5.8882   -1.9996 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1253    5.3545   -0.9204 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8948    5.3573    0.3176 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3481    5.8329    1.0614 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2115    6.9818   -0.0500 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2S)-2-Amino-3-({[(2R)-3-(hexadecanoyloxy)-2-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propoxy](hydroxy)phosphoryl}oxy)propanoate	Generator

Chemical Formula

C₄₂H₇₄NO₁₃P

Average Molecular Weight

832.022

Monoisotopic Molecular Weight

831.489778445

IUPAC Name

(2S)-2-amino-3-({[(2R)-3-(hexadecanoyloxy)-2-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propoxy](hydroxy)phosphoryl}oxy)propanoic acid

Traditional Name

(2S)-2-amino-3-{[(2R)-3-(hexadecanoyloxy)-2-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propoxy(hydroxy)phosphoryl]oxy}propanoic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C42H74NO13P/c1-3-5-7-8-9-10-11-12-13-14-15-16-21-25-40(47)53-30-34(31-54-57(51,52)55-32-37(43)42(49)50)56-41(48)26-22-18-17-20-24-35-36(39(46)29-38(35)45)28-27-33(44)23-19-6-4-2/h17,20,27-28,33-38,44-45H,3-16,18-19,21-26,29-32,43H2,1-2H3,(H,49,50)(H,51,52)/b20-17-,28-27+/t33-,34+,35+,36+,37-,38-/m0/s1

InChI Key

ZIVWMBZXONGZTM-GIAYAOODSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Organelle

endoplasmic reticulum (HMDB: HMDB0281136)

golgi apparatus membrane (HMDB: HMDB0281136)
cell membrane (HMDB: HMDB0281136)

Cell

All cells and tissues (HMDB: HMDB0281136)

Process

Naturally occurring process

Biological process

Biochemical pathway

Metabolic pathway

phosphatidylserine biosynthesis (HMDB: HMDB0281136)

Role

Biological role

Nutrient

Nutrient (PMID: 15979148)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	2.55	ALOGPS
logP	6.46	ChemAxon
logS	-6.4	ALOGPS
pKa (Strongest Acidic)	1.47	ChemAxon
pKa (Strongest Basic)	9.38	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	229.21 Å²	ChemAxon
Rotatable Bond Count	38	ChemAxon
Refractivity	219.19 m³·mol⁻¹	ChemAxon
Polarizability	94.75 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	290.177	32859911
AllCCS	[M+H-H2O]+	290.369	32859911
AllCCS	[M+Na]+	289.892	32859911
AllCCS	[M+NH4]+	289.961	32859911
AllCCS	[M-H]-	284.925	32859911
AllCCS	[M+Na-2H]-	290.83	32859911
AllCCS	[M+HCOO]-	297.348	32859911
DeepCCS	[M+H]+	265.576	30932474
DeepCCS	[M-H]-	263.922	30932474
DeepCCS	[M-2H]-	297.956	30932474
DeepCCS	[M+Na]+	271.732	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PS(16:0/PGD2)	CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC	5646.3	Standard polar	33892256
PS(16:0/PGD2)	CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC	5185.3	Standard non polar	33892256
PS(16:0/PGD2)	CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC	5964.6	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 10V, Positive-QTOF	splash10-001i-0000001090-371901abfa8efb7be6c8	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 20V, Positive-QTOF	splash10-000t-0001439160-2b20d89de3b1d8147f4b	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 40V, Positive-QTOF	splash10-0002-0001439110-c93476e348b0c1637197	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 10V, Positive-QTOF	splash10-0ue2-0000009990-321a16303ac8684240dd	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 20V, Positive-QTOF	splash10-0ue8-0900009990-6659323b2f60662837f0	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 40V, Positive-QTOF	splash10-0ue8-0900009990-6659323b2f60662837f0	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 10V, Negative-QTOF	splash10-001i-0000000090-8bcd792b8824d01231b7	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 20V, Negative-QTOF	splash10-001i-0000000190-e2bd96ddaa03fc4c7dcd	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 40V, Negative-QTOF	splash10-0k96-0149510640-b1fd601834ff20256c0b	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 10V, Positive-QTOF	splash10-0uxr-0000001690-7efdc6b1520e6c93a081	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 20V, Positive-QTOF	splash10-0udi-0000000290-de0ec0e248295c0d6241	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(16:0/PGD2) 40V, Positive-QTOF	splash10-0a4i-0090003310-fd179025815d8d7b0662	2021-09-28	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]

Showing metabocard for PS(16:0/PGD2) (HMDB0281136)

MOL for HMDB0281136 (PS(16:0/PGD2))

3D MOL for HMDB0281136 (PS(16:0/PGD2))

3D SDF for HMDB0281136 (PS(16:0/PGD2))

3D-SDF for HMDB0281136 (PS(16:0/PGD2))

PDB for HMDB0281136 (PS(16:0/PGD2))

3D PDB for HMDB0281136 (PS(16:0/PGD2))

SMILES for HMDB0281136 (PS(16:0/PGD2))

INCHI for HMDB0281136 (PS(16:0/PGD2))

Structure for HMDB0281136 (PS(16:0/PGD2))

3D Structure for HMDB0281136 (PS(16:0/PGD2))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra