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Showing metabocard for PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) (HMDB0282593)

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Record Information
Version5.0
StatusPredicted
Creation Date2021-09-13 19:28:43 UTC
Update Date2022-11-30 20:03:42 UTC
HMDB IDHMDB0282593
Secondary Accession NumbersNone
Metabolite Identification
Common NamePS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha)
DescriptionPS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) is an oxidized phosphatidylserine (PS). Oxidized phosphatidylserines are glycerophospholipids in which a phosphorylserine moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized phosphatidylserines belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, phosphatidylserines can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha), in particular, consists of one chain of one 5Z,8Z,11Z,14Z-eicosatetraenoyl at the C-1 position and one chain of 6-Keto-prostaglandin F1alpha at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized PSs can be synthesized via three different routes. In one route, the oxidized PS is synthetized de novo following the same mechanisms as for PSs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the PS backbone, mainly through the action of LOX (PMID: 33329396 ).
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))


  Mrv1652309132121292D          

 62 62  0  0  1  0            999 V2000
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M  END
Download

3D MOL for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))

HMDB0282593
     RDKit          3D
PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha)
138138  0  0  0  0  0  0  0  0999 V2000
   16.7133    5.4643    3.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.9269    4.1691    3.1835 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4712    4.5079    3.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5532    3.3282    3.0846 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7614    2.5455    1.7916 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5702    3.3923    0.6119 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6886    3.1886   -0.2953 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7299    2.0841   -0.3012 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3178    2.5797   -0.3136 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4691    2.3522   -1.3023 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.0950    0.4049   -2.9100 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3024   -1.2796    1.3466 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5085   -2.2941    0.6436 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3977   -2.1800   -0.6341 O   0  0  0  0  0  0  0  0  0  0  0  0
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  -14.3489    4.9807    2.2326 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5709    6.1144    2.4253 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.8105    5.2689    3.3881 H   0  0  0  0  0  0  0  0  0  0  0  0
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   16.1607    3.4982    4.0253 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))


  Mrv1652309132121292D          

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M  END
> <DATABASE_ID>
HMDB0282593

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCC(=O)C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C46H76NO14P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-27-44(52)58-33-38(34-59-62(56,57)60-35-41(47)46(54)55)61-45(53)28-24-23-26-37(49)31-40-39(42(50)32-43(40)51)30-29-36(48)25-21-6-4-2/h9-10,12-13,15-16,18-19,29-30,36,38-43,48,50-51H,3-8,11,14,17,20-28,31-35,47H2,1-2H3,(H,54,55)(H,56,57)/b10-9-,13-12-,16-15-,19-18-,30-29+/t36-,38+,39+,40+,41-,42+,43-/m0/s1

> <INCHI_KEY>
GJNWEHZGLIPIMS-LPZJSBHFSA-N

> <FORMULA>
C46H76NO14P

> <MOLECULAR_WEIGHT>
898.081

> <EXACT_MASS>
897.500343129

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
138

> <JCHEM_AVERAGE_POLARIZABILITY>
98.20981820467279

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-3-({[(2R)-2-({7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]-6-oxoheptanoyl}oxy)-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy](hydroxy)phosphoryl}oxy)propanoic acid

> <ALOGPS_LOGP>
2.25

> <JCHEM_LOGP>
5.361171986512493

> <ALOGPS_LOGS>
-5.97

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
2.17846409823631

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.468315263933023

> <JCHEM_PKA_STRONGEST_BASIC>
9.376601264059143

> <JCHEM_POLAR_SURFACE_AREA>
249.43999999999997

> <JCHEM_REFRACTIVITY>
242.61610000000016

> <JCHEM_ROTATABLE_BOND_COUNT>
39

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.57e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-3-{[(2R)-2-({7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]-6-oxoheptanoyl}oxy)-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy(hydroxy)phosphoryl]oxy}propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))

HMDB0282593
     RDKit          3D
PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha)
138138  0  0  0  0  0  0  0  0999 V2000
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   13.5532    3.3282    3.0846 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  N   UNK     0       2.060 -28.674   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       3.393 -27.904   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.393 -26.364   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       4.727 -25.594   0.000  0.00  0.00           O+0
HETATM    5  P   UNK     0       4.727 -24.054   0.000  0.00  0.00           P+0
HETATM    6  O   UNK     0       3.187 -24.054   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0       6.267 -24.054   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       4.727 -22.514   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       6.061 -21.744   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.061 -20.204   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.727 -19.434   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       3.393 -20.204   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       2.060 -19.434   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       2.060 -17.894   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.726 -20.204   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.608 -19.434   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.942 -20.204   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.275 -19.434   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.609 -20.204   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.609 -21.744   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -5.943 -22.514   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.943 -24.054   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -4.609 -24.824   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -4.609 -26.364   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -3.275 -27.134   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.942 -26.364   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.608 -27.134   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.726 -26.364   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.726 -24.824   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.608 -24.054   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -1.942 -24.824   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -3.275 -24.054   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -3.275 -22.514   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       7.394 -19.434   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       8.728 -20.204   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       8.728 -21.744   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      10.062 -19.434   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      11.395 -20.204   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      12.729 -19.434   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      14.063 -20.204   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      15.396 -19.434   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      15.396 -17.894   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      16.730 -20.204   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      18.064 -19.434   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      18.225 -17.902   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      17.080 -16.872   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      19.731 -17.582   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      20.501 -18.916   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      22.033 -19.077   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      19.471 -20.060   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      19.791 -21.567   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      21.255 -22.043   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      21.576 -23.549   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0      20.431 -24.579   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0      23.040 -24.025   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      23.360 -25.531   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      24.825 -26.007   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      25.145 -27.513   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      26.610 -27.989   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0       4.727 -28.674   0.000  0.00  0.00           C+0
HETATM   61  O   UNK     0       6.061 -27.904   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0       4.727 -30.214   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   60                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7    8                                             
CONECT    6    5                                                            
CONECT    7    5                                                            
CONECT    8    5    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   34                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32                                                            
CONECT   34   10   35                                                       
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44                                                       
CONECT   44   43   45   50                                                  
CONECT   45   44   46   47                                                  
CONECT   46   45                                                            
CONECT   47   45   48                                                       
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   44   51                                                  
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54   55                                                  
CONECT   54   53                                                            
CONECT   55   53   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58                                                            
CONECT   60    2   61   62                                                  
CONECT   61   60                                                            
CONECT   62   60                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  124    0
END
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3D PDB for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))

COMPND    HMDB0282593
HETATM    1  C1  UNL     1      16.713   5.464   3.324  1.00  0.00           C  
HETATM    2  C2  UNL     1      15.927   4.169   3.183  1.00  0.00           C  
HETATM    3  C3  UNL     1      14.471   4.508   3.212  1.00  0.00           C  
HETATM    4  C4  UNL     1      13.553   3.328   3.085  1.00  0.00           C  
HETATM    5  C5  UNL     1      13.761   2.546   1.792  1.00  0.00           C  
HETATM    6  C6  UNL     1      13.570   3.392   0.612  1.00  0.00           C  
HETATM    7  C7  UNL     1      12.689   3.189  -0.295  1.00  0.00           C  
HETATM    8  C8  UNL     1      11.730   2.084  -0.301  1.00  0.00           C  
HETATM    9  C9  UNL     1      10.318   2.580  -0.314  1.00  0.00           C  
HETATM   10  C10 UNL     1       9.469   2.352  -1.302  1.00  0.00           C  
HETATM   11  C11 UNL     1       9.755   1.619  -2.490  1.00  0.00           C  
HETATM   12  C12 UNL     1       9.095   0.405  -2.910  1.00  0.00           C  
HETATM   13  C13 UNL     1       8.185  -0.292  -2.331  1.00  0.00           C  
HETATM   14  C14 UNL     1       7.578   0.008  -1.014  1.00  0.00           C  
HETATM   15  C15 UNL     1       6.148   0.300  -1.246  1.00  0.00           C  
HETATM   16  C16 UNL     1       5.153  -0.410  -0.788  1.00  0.00           C  
HETATM   17  C17 UNL     1       5.380  -1.610   0.023  1.00  0.00           C  
HETATM   18  C18 UNL     1       4.769  -1.507   1.406  1.00  0.00           C  
HETATM   19  C19 UNL     1       3.302  -1.280   1.347  1.00  0.00           C  
HETATM   20  C20 UNL     1       2.508  -2.294   0.644  1.00  0.00           C  
HETATM   21  O1  UNL     1       2.398  -2.180  -0.634  1.00  0.00           O  
HETATM   22  O2  UNL     1       1.860  -3.366   1.215  1.00  0.00           O  
HETATM   23  C21 UNL     1       1.068  -4.307   0.525  1.00  0.00           C  
HETATM   24  C22 UNL     1      -0.187  -3.682   0.068  1.00  0.00           C  
HETATM   25  C23 UNL     1      -1.156  -4.707  -0.563  1.00  0.00           C  
HETATM   26  O3  UNL     1      -0.746  -5.101  -1.778  1.00  0.00           O  
HETATM   27  P1  UNL     1      -1.667  -6.099  -2.686  1.00  0.00           P  
HETATM   28  O4  UNL     1      -2.444  -5.169  -3.681  1.00  0.00           O  
HETATM   29  O5  UNL     1      -0.638  -7.023  -3.734  1.00  0.00           O  
HETATM   30  O6  UNL     1      -2.771  -7.093  -2.031  1.00  0.00           O  
HETATM   31  C24 UNL     1      -2.854  -7.340  -0.709  1.00  0.00           C  
HETATM   32  C25 UNL     1      -4.002  -8.357  -0.418  1.00  0.00           C  
HETATM   33  N1  UNL     1      -5.274  -7.833  -0.863  1.00  0.00           N  
HETATM   34  C26 UNL     1      -4.060  -8.618   1.027  1.00  0.00           C  
HETATM   35  O7  UNL     1      -5.097  -8.360   1.675  1.00  0.00           O  
HETATM   36  O8  UNL     1      -2.972  -9.147   1.672  1.00  0.00           O  
HETATM   37  O9  UNL     1      -0.080  -2.574  -0.747  1.00  0.00           O  
HETATM   38  C27 UNL     1      -0.661  -1.341  -0.349  1.00  0.00           C  
HETATM   39  O10 UNL     1      -1.265  -1.312   0.734  1.00  0.00           O  
HETATM   40  C28 UNL     1      -0.479  -0.208  -1.280  1.00  0.00           C  
HETATM   41  C29 UNL     1      -1.180   1.003  -0.748  1.00  0.00           C  
HETATM   42  C30 UNL     1      -2.672   0.812  -0.665  1.00  0.00           C  
HETATM   43  C31 UNL     1      -3.259   2.092  -0.093  1.00  0.00           C  
HETATM   44  C32 UNL     1      -4.734   2.068  -0.002  1.00  0.00           C  
HETATM   45  O11 UNL     1      -5.277   2.979   0.608  1.00  0.00           O  
HETATM   46  C33 UNL     1      -5.600   1.022  -0.601  1.00  0.00           C  
HETATM   47  C34 UNL     1      -7.068   1.408  -0.487  1.00  0.00           C  
HETATM   48  C35 UNL     1      -7.345   2.700  -1.193  1.00  0.00           C  
HETATM   49  O12 UNL     1      -6.198   3.229  -1.816  1.00  0.00           O  
HETATM   50  C36 UNL     1      -8.347   2.409  -2.281  1.00  0.00           C  
HETATM   51  C37 UNL     1      -8.188   0.931  -2.513  1.00  0.00           C  
HETATM   52  O13 UNL     1      -7.013   0.737  -3.247  1.00  0.00           O  
HETATM   53  C38 UNL     1      -7.963   0.366  -1.145  1.00  0.00           C  
HETATM   54  C39 UNL     1      -9.188   0.225  -0.326  1.00  0.00           C  
HETATM   55  C40 UNL     1     -10.423   0.436  -0.755  1.00  0.00           C  
HETATM   56  C41 UNL     1     -11.556   0.246   0.213  1.00  0.00           C  
HETATM   57  O14 UNL     1     -11.096  -0.130   1.453  1.00  0.00           O  
HETATM   58  C42 UNL     1     -12.329   1.534   0.357  1.00  0.00           C  
HETATM   59  C43 UNL     1     -13.468   1.369   1.322  1.00  0.00           C  
HETATM   60  C44 UNL     1     -14.285   2.611   1.518  1.00  0.00           C  
HETATM   61  C45 UNL     1     -13.482   3.759   2.052  1.00  0.00           C  
HETATM   62  C46 UNL     1     -14.349   4.981   2.233  1.00  0.00           C  
HETATM   63  H1  UNL     1      16.571   6.114   2.425  1.00  0.00           H  
HETATM   64  H2  UNL     1      17.811   5.269   3.388  1.00  0.00           H  
HETATM   65  H3  UNL     1      16.421   5.969   4.269  1.00  0.00           H  
HETATM   66  H4  UNL     1      16.161   3.498   4.025  1.00  0.00           H  
HETATM   67  H5  UNL     1      16.290   3.689   2.271  1.00  0.00           H  
HETATM   68  H6  UNL     1      14.195   5.331   2.508  1.00  0.00           H  
HETATM   69  H7  UNL     1      14.279   4.925   4.249  1.00  0.00           H  
HETATM   70  H8  UNL     1      12.516   3.719   3.125  1.00  0.00           H  
HETATM   71  H9  UNL     1      13.761   2.647   3.939  1.00  0.00           H  
HETATM   72  H10 UNL     1      13.278   1.587   1.834  1.00  0.00           H  
HETATM   73  H11 UNL     1      14.884   2.319   1.809  1.00  0.00           H  
HETATM   74  H12 UNL     1      14.235   4.278   0.484  1.00  0.00           H  
HETATM   75  H13 UNL     1      12.594   3.879  -1.191  1.00  0.00           H  
HETATM   76  H14 UNL     1      11.868   1.331  -1.080  1.00  0.00           H  
HETATM   77  H15 UNL     1      11.831   1.517   0.660  1.00  0.00           H  
HETATM   78  H16 UNL     1       9.967   3.162   0.534  1.00  0.00           H  
HETATM   79  H17 UNL     1       8.468   2.818  -1.191  1.00  0.00           H  
HETATM   80  H18 UNL     1      10.879   1.425  -2.622  1.00  0.00           H  
HETATM   81  H19 UNL     1       9.664   2.397  -3.400  1.00  0.00           H  
HETATM   82  H20 UNL     1       9.413  -0.042  -3.926  1.00  0.00           H  
HETATM   83  H21 UNL     1       7.799  -1.224  -2.865  1.00  0.00           H  
HETATM   84  H22 UNL     1       8.024   0.808  -0.430  1.00  0.00           H  
HETATM   85  H23 UNL     1       7.738  -0.921  -0.380  1.00  0.00           H  
HETATM   86  H24 UNL     1       5.955   1.198  -1.864  1.00  0.00           H  
HETATM   87  H25 UNL     1       4.093  -0.093  -1.019  1.00  0.00           H  
HETATM   88  H26 UNL     1       6.357  -2.053   0.038  1.00  0.00           H  
HETATM   89  H27 UNL     1       4.731  -2.427  -0.482  1.00  0.00           H  
HETATM   90  H28 UNL     1       4.965  -2.462   1.962  1.00  0.00           H  
HETATM   91  H29 UNL     1       5.236  -0.714   2.022  1.00  0.00           H  
HETATM   92  H30 UNL     1       2.868  -1.091   2.373  1.00  0.00           H  
HETATM   93  H31 UNL     1       3.135  -0.311   0.811  1.00  0.00           H  
HETATM   94  H32 UNL     1       1.682  -4.749  -0.296  1.00  0.00           H  
HETATM   95  H33 UNL     1       0.802  -5.173   1.174  1.00  0.00           H  
HETATM   96  H34 UNL     1      -0.748  -3.371   1.008  1.00  0.00           H  
HETATM   97  H35 UNL     1      -2.162  -4.281  -0.456  1.00  0.00           H  
HETATM   98  H36 UNL     1      -1.119  -5.608   0.128  1.00  0.00           H  
HETATM   99  H37 UNL     1       0.295  -6.825  -3.519  1.00  0.00           H  
HETATM  100  H38 UNL     1      -3.216  -6.432  -0.177  1.00  0.00           H  
HETATM  101  H39 UNL     1      -1.946  -7.713  -0.215  1.00  0.00           H  
HETATM  102  H40 UNL     1      -3.798  -9.283  -0.968  1.00  0.00           H  
HETATM  103  H41 UNL     1      -5.669  -8.399  -1.674  1.00  0.00           H  
HETATM  104  H42 UNL     1      -5.195  -6.866  -1.244  1.00  0.00           H  
HETATM  105  H43 UNL     1      -2.831 -10.157   1.776  1.00  0.00           H  
HETATM  106  H44 UNL     1       0.601   0.057  -1.391  1.00  0.00           H  
HETATM  107  H45 UNL     1      -0.806  -0.472  -2.312  1.00  0.00           H  
HETATM  108  H46 UNL     1      -0.907   1.866  -1.396  1.00  0.00           H  
HETATM  109  H47 UNL     1      -0.780   1.180   0.286  1.00  0.00           H  
HETATM  110  H48 UNL     1      -3.023   0.665  -1.718  1.00  0.00           H  
HETATM  111  H49 UNL     1      -2.958  -0.011  -0.008  1.00  0.00           H  
HETATM  112  H50 UNL     1      -2.789   2.311   0.892  1.00  0.00           H  
HETATM  113  H51 UNL     1      -2.993   2.938  -0.788  1.00  0.00           H  
HETATM  114  H52 UNL     1      -5.325   0.831  -1.659  1.00  0.00           H  
HETATM  115  H53 UNL     1      -5.415   0.078  -0.050  1.00  0.00           H  
HETATM  116  H54 UNL     1      -7.314   1.490   0.587  1.00  0.00           H  
HETATM  117  H55 UNL     1      -7.703   3.462  -0.462  1.00  0.00           H  
HETATM  118  H56 UNL     1      -6.169   4.228  -1.745  1.00  0.00           H  
HETATM  119  H57 UNL     1      -9.371   2.709  -1.979  1.00  0.00           H  
HETATM  120  H58 UNL     1      -8.072   3.000  -3.189  1.00  0.00           H  
HETATM  121  H59 UNL     1      -9.055   0.493  -3.056  1.00  0.00           H  
HETATM  122  H60 UNL     1      -6.847   1.479  -3.863  1.00  0.00           H  
HETATM  123  H61 UNL     1      -7.409  -0.610  -1.226  1.00  0.00           H  
HETATM  124  H62 UNL     1      -9.060  -0.084   0.732  1.00  0.00           H  
HETATM  125  H63 UNL     1     -10.583   0.724  -1.774  1.00  0.00           H  
HETATM  126  H64 UNL     1     -12.249  -0.521  -0.148  1.00  0.00           H  
HETATM  127  H65 UNL     1     -11.056   0.656   2.088  1.00  0.00           H  
HETATM  128  H66 UNL     1     -12.756   1.829  -0.646  1.00  0.00           H  
HETATM  129  H67 UNL     1     -11.663   2.318   0.736  1.00  0.00           H  
HETATM  130  H68 UNL     1     -14.145   0.548   0.984  1.00  0.00           H  
HETATM  131  H69 UNL     1     -13.077   1.042   2.309  1.00  0.00           H  
HETATM  132  H70 UNL     1     -14.737   2.900   0.531  1.00  0.00           H  
HETATM  133  H71 UNL     1     -15.139   2.444   2.201  1.00  0.00           H  
HETATM  134  H72 UNL     1     -12.639   3.984   1.366  1.00  0.00           H  
HETATM  135  H73 UNL     1     -13.025   3.444   3.030  1.00  0.00           H  
HETATM  136  H74 UNL     1     -14.387   5.518   1.261  1.00  0.00           H  
HETATM  137  H75 UNL     1     -15.372   4.711   2.589  1.00  0.00           H  
HETATM  138  H76 UNL     1     -13.887   5.589   3.042  1.00  0.00           H  
CONECT    1    2   63   64   65
CONECT    2    3   66   67
CONECT    3    4   68   69
CONECT    4    5   70   71
CONECT    5    6   72   73
CONECT    6    7    7   74
CONECT    7    8   75
CONECT    8    9   76   77
CONECT    9   10   10   78
CONECT   10   11   79
CONECT   11   12   80   81
CONECT   12   13   13   82
CONECT   13   14   83
CONECT   14   15   84   85
CONECT   15   16   16   86
CONECT   16   17   87
CONECT   17   18   88   89
CONECT   18   19   90   91
CONECT   19   20   92   93
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   94   95
CONECT   24   25   37   96
CONECT   25   26   97   98
CONECT   26   27
CONECT   27   28   28   29   30
CONECT   29   99
CONECT   30   31
CONECT   31   32  100  101
CONECT   32   33   34  102
CONECT   33  103  104
CONECT   34   35   35   36
CONECT   36  105
CONECT   37   38
CONECT   38   39   39   40
CONECT   40   41  106  107
CONECT   41   42  108  109
CONECT   42   43  110  111
CONECT   43   44  112  113
CONECT   44   45   45   46
CONECT   46   47  114  115
CONECT   47   48   53  116
CONECT   48   49   50  117
CONECT   49  118
CONECT   50   51  119  120
CONECT   51   52   53  121
CONECT   52  122
CONECT   53   54  123
CONECT   54   55   55  124
CONECT   55   56  125
CONECT   56   57   58  126
CONECT   57  127
CONECT   58   59  128  129
CONECT   59   60  130  131
CONECT   60   61  132  133
CONECT   61   62  134  135
CONECT   62  136  137  138
END
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SMILES for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))

CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCC(=O)C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@@H](O)CCCCC
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INCHI for HMDB0282593 (PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha))

InChI=1S/C46H76NO14P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-27-44(52)58-33-38(34-59-62(56,57)60-35-41(47)46(54)55)61-45(53)28-24-23-26-37(49)31-40-39(42(50)32-43(40)51)30-29-36(48)25-21-6-4-2/h9-10,12-13,15-16,18-19,29-30,36,38-43,48,50-51H,3-8,11,14,17,20-28,31-35,47H2,1-2H3,(H,54,55)(H,56,57)/b10-9-,13-12-,16-15-,19-18-,30-29+/t36-,38+,39+,40+,41-,42+,43-/m0/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
(2S)-2-Amino-3-({[(2R)-2-({7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]-6-oxoheptanoyl}oxy)-3-[(5Z,8Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy](hydroxy)phosphoryl}oxy)propanoateGenerator
Chemical FormulaC46H76NO14P
Average Molecular Weight898.081
Monoisotopic Molecular Weight897.500343129
IUPAC Name(2S)-2-amino-3-({[(2R)-2-({7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]-6-oxoheptanoyl}oxy)-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy](hydroxy)phosphoryl}oxy)propanoic acid
Traditional Name(2S)-2-amino-3-{[(2R)-2-({7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]cyclopentyl]-6-oxoheptanoyl}oxy)-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy(hydroxy)phosphoryl]oxy}propanoic acid
CAS Registry NumberNot Available
SMILES
CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OC[C@H](COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCC(=O)C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@@H](O)CCCCC
InChI Identifier
InChI=1S/C46H76NO14P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-27-44(52)58-33-38(34-59-62(56,57)60-35-41(47)46(54)55)61-45(53)28-24-23-26-37(49)31-40-39(42(50)32-43(40)51)30-29-36(48)25-21-6-4-2/h9-10,12-13,15-16,18-19,29-30,36,38-43,48,50-51H,3-8,11,14,17,20-28,31-35,47H2,1-2H3,(H,54,55)(H,56,57)/b10-9-,13-12-,16-15-,19-18-,30-29+/t36-,38+,39+,40+,41-,42+,43-/m0/s1
InChI KeyGJNWEHZGLIPIMS-LPZJSBHFSA-N
Chemical Taxonomy
ClassificationNot classified
Ontology
Physiological effectNot Available
Disposition
Biological location
Process
Naturally occurring process
Role
Biological role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.25ALOGPS
logP5.36ChemAxon
logS-6ALOGPS
pKa (Strongest Acidic)1.47ChemAxon
pKa (Strongest Basic)9.38ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area249.44 ŲChemAxon
Rotatable Bond Count39ChemAxon
Refractivity242.62 m³·mol⁻¹ChemAxon
Polarizability98.21 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+299.66932859911
AllCCS[M+H-H2O]+299.9132859911
AllCCS[M+Na]+299.32832859911
AllCCS[M+NH4]+299.40932859911
AllCCS[M-H]-295.16632859911
AllCCS[M+Na-2H]-302.16832859911
AllCCS[M+HCOO]-309.82632859911
DeepCCS[M+H]+286.59130932474
DeepCCS[M-H]-284.69630932474
DeepCCS[M-2H]-318.51230932474
DeepCCS[M+Na]+292.52630932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 10V, Positive-QTOFsplash10-0002-0000000190-4dcaee24260e77a4b8912021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 20V, Positive-QTOFsplash10-03dj-0001141970-1dd08b352f6f0cf27c112021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 40V, Positive-QTOFsplash10-03di-0001141930-bf3730252595337af5492021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 10V, Positive-QTOFsplash10-0yvi-0000000999-c51f809623d7f6768c3f2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 20V, Positive-QTOFsplash10-0yvo-0900000999-fd1cff17f99c2be2dc0e2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 40V, Positive-QTOFsplash10-0yvo-0900000999-fd1cff17f99c2be2dc0e2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 10V, Negative-QTOFsplash10-0002-0000000090-509ef627f1e94ce869372021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 20V, Negative-QTOFsplash10-0002-0000000090-a06b7dccdaa73dc7630f2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 40V, Negative-QTOFsplash10-0a4i-0007440090-3b926ce34bd0bca70fbf2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 10V, Positive-QTOFsplash10-00e9-0000000169-1b34211c9def28603c252021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 20V, Positive-QTOFsplash10-00di-0000000029-11979f31277024f308752021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:4(5Z,8Z,11Z,14Z)/6 keto-PGF1alpha) 40V, Positive-QTOFsplash10-0a4i-0090000331-e8b545ddd7a6f73468652021-10-19Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]