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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-16 02:47:08 UTC

Update Date

2022-11-30 20:07:06 UTC

HMDB ID

HMDB0290291

Secondary Accession Numbers

None

Metabolite Identification

Common Name

SM(d16:1/PGD1)

Description

SM(d16:1/PGD1) is a type of oxidized sphingolipid found in animal cell membranes. It usually consists of phosphorylcholine and ceramide. SM(d16:1/PGD1) consists of a sphingosine backbone and a Prostaglandin D1 chain. In humans, sphingomyelin is the only membrane phospholipid not derived from glycerol. Like all sphingolipids, SM has a ceramide core (sphingosine bonded to a fatty acid via an amide linkage). In addition, it contains one polar head group, which is either phosphocholine or phosphoethanolamine. The plasma membrane of cells is highly enriched in sphingomyelin and is considered largely to be found in the exoplasmic leaflet of the cell membrane. However, there is some evidence that there may also be a sphingomyelin pool in the inner leaflet of the membrane. Moreover, neutral sphingomyelinase-2, an enzyme that breaks down sphingomyelin into ceramide, has been found to localize exclusively to the inner leaflet further suggesting that there may be sphingomyelin present there. Sphingomyelin can accumulate in a rare hereditary disease called Niemann-Pick Disease, types A and B. Niemann-Pick disease is a genetically-inherited disease caused by a deficiency in the enzyme sphingomyelinase, which causes the accumulation of sphingomyelin in spleen, liver, lungs, bone marrow, and the brain, causing irreversible neurological damage. SMs play a role in signal transduction. Sphingomyelins are synthesized by the transfer of phosphorylcholine from phosphatidylcholine to a ceramide in a reaction catalyzed by sphingomyelin synthase.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309162104472D          

 53 53  0  0  1  0            999 V2000
    1.2801  -11.5804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5657  -11.1679    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    0.1532  -11.8824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9782  -10.4535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1488  -10.7554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1488   -9.9304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8633   -9.5179    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8633   -8.6929    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6883   -8.6929    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -0.0383   -8.6929    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8633   -7.8679    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1488   -7.4554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1488   -6.6304    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8633   -6.2179    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8633   -5.3929    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5778   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2922   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0067   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7212   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4356   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1501   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8646   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5791   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2935   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0080   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7225   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4369   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1514   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5657   -6.2179    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2801   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2801   -7.4554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9946   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7091   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4235   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1380   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8525   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5670   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2814   -6.2179    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3677   -5.3974    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7546   -4.8454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1746   -5.2259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5871   -5.9404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4076   -6.0266    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0351   -6.5535    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2066   -7.3605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5935   -7.9125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7651   -8.7195    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1520   -9.2715    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5497   -8.9744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7212   -9.7814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5058  -10.0363    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6774  -10.8433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4620  -11.0982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 13 29  1  1  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 38 37  1  1  0  0  0
 38 39  1  0  0  0  0
 39 40  1  1  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 42 44  1  0  0  0  0
 38 44  1  0  0  0  0
 44 45  1  6  0  0  0
 45 46  2  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  6  0  0  0
 47 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
M  CHG  2   2   1   9  -1
M  END

HMDB0290291
     RDKit          3D
SM(d16:1/PGD1)
130130  0  0  0  0  0  0  0  0999 V2000
  -12.4597   -6.6106   -0.9002 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7816   -5.2038   -0.4891 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1298   -4.1789   -1.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6316   -4.2563   -1.3986 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0113   -4.0523   -0.0309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5021   -4.1551   -0.2055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7779   -3.9630    1.0969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2840   -4.0705    0.8876 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7675   -3.0220   -0.0947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2723   -3.1751   -0.2649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6754   -2.1783   -1.1897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6935   -0.7758   -0.7788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857   -0.2657    0.3636 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0538    1.1848    0.6315 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1155    1.4057    1.5619 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8243    1.7455    1.2138 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0917    3.3271    1.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0276    3.9267    1.7591 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9333    5.5521    1.9021 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.7885    6.0379    0.9480 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3513    5.9034    3.4921 O   0  0  0  0  0  1  0  0  0  0  0  0
   -3.2411    6.4307    1.5349 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1154    6.1416    0.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1860    7.2392    0.4114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5874    8.5005    0.0815 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.6066    9.3990   -0.4204 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9668    9.1235    1.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5766    8.3943   -0.9496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6443    1.6291    0.4129 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3336    1.6560    0.9593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2125    1.7725    2.2003 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8461    1.5545    0.0373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1043    1.8795    0.8035 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2993    1.8566   -0.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5129    0.4761   -0.6827 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6997    0.4314   -1.5711 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0073    0.7240   -0.9857 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6824   -0.1335   -0.0213 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1614   -0.5112    1.2866 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2748    0.3027    1.9267 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7154   -1.9576    1.1585 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4170   -2.4749   -0.0350 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3101   -3.6240   -0.4246 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2422   -1.4141   -0.6628 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.6686   -1.6440   -0.2520 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6476   -1.6978   -1.1308 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1043   -1.9323   -0.7020 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.9415   -2.8350    0.3459 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8844   -2.4148   -1.8510 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3185   -2.6582   -1.7425 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0012   -3.6141   -0.8987 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9659   -3.5673    0.5822 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8971   -4.7114    1.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5184   -6.7297   -1.9929 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4763   -6.8885   -0.4779 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2496   -7.2665   -0.4404 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5711   -5.0910    0.5728 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8818   -5.0765   -0.6184 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5075   -3.1579   -1.1894 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.4608   -4.4288   -2.4281 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2726   -3.4282   -2.0405 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3466   -5.2080   -1.8544 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3884   -4.7731    0.7095 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2257   -3.0344    0.3511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2021   -5.1312   -0.6332 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2323   -3.3746   -0.9434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0443   -2.9768    1.5587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0528   -4.7448    1.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8206   -3.8715    1.8940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9965   -5.0802    0.5999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2114   -3.3193   -1.0961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0864   -2.0243    0.1596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9971   -4.2144   -0.5026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8298   -2.9781    0.7567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2772   -2.2386   -2.1512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6468   -2.4992   -1.5408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3342   -0.0283   -1.5237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4155   -0.9647    1.1469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3466    1.6922   -0.3296 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7153    1.1127    2.4385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6619    1.5451    2.2691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3550    3.5751    0.1799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9885    3.3710    1.8487 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7737    5.2407    0.7953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6299    5.9067   -0.3972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8801    6.8835   -0.3593 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7059    7.3016    1.3658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1693   10.2774   -0.9354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2537    8.8088   -1.1173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2465    9.6781    0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8938   10.2184    0.9788 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9333    8.7373    1.3405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5211    8.9400    2.1502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1743    9.4233   -1.1097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6989    7.7885   -0.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9730    8.0478   -1.9071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7696    1.5201   -0.6222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7320    2.2716   -0.8018 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8725    0.5429   -0.4015 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9795    2.8719    1.2838 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2653    1.1205    1.6192 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0484    2.5831   -0.9284 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1887    2.1781    0.4450 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6240    0.2276   -1.3660 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5125   -0.3374    0.0394 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5290    1.1992   -2.4027 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6609   -0.5388   -2.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7794    0.9132   -1.8278 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0075    1.7823   -0.5166 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6798    0.4416    0.2066 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.9200   -0.1864    2.7131 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.1131   -1.4448   -1.7399 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9488   -1.7748    0.7856 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4810   -1.5803   -2.1792 H   0  0  0  0  0  0  0  0  0  0  0  0
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   13.6448   -2.8908   -2.8502 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8809   -1.6389   -1.6576 H   0  0  0  0  0  0  0  0  0  0  0  0
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   14.4338   -2.6635    1.0178 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0109   -3.8545    1.0554 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.5108   -5.6391    0.7211 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9377   -4.4727    0.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.7516   -4.6771    2.2335 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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 37108  1  0
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 38110  1  1
 39111  1  1
 40112  1  0
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 47118  1  1
 48119  1  0
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 50123  1  0
 51124  1  0
 51125  1  0
 52126  1  0
 52127  1  0
 53128  1  0
 53129  1  0
 53130  1  0
M  CHG  2  21  -1  25   1
M  END


  Mrv1652309162104472D          

 53 53  0  0  1  0            999 V2000
    1.2801  -11.5804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5657  -11.1679    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    0.1532  -11.8824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9782  -10.4535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1488  -10.7554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1488   -9.9304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.8633   -7.8679    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.8633   -6.2179    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8633   -5.3929    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5778   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2922   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4356   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1501   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8646   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5791   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2935   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0080   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7225   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4369   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1514   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5657   -6.2179    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2801   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2801   -7.4554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9946   -6.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7091   -6.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.3677   -5.3974    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7546   -4.8454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1746   -5.2259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5871   -5.9404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4076   -6.0266    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    6.5935   -7.9125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7651   -8.7195    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1520   -9.2715    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5497   -8.9744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7212   -9.7814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5058  -10.0363    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6774  -10.8433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4620  -11.0982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 13 29  1  1  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 38 37  1  1  0  0  0
 38 39  1  0  0  0  0
 39 40  1  1  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 42 44  1  0  0  0  0
 38 44  1  0  0  0  0
 44 45  1  6  0  0  0
 45 46  2  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  6  0  0  0
 47 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
M  CHG  2   2   1   9  -1
M  END
> <DATABASE_ID>
HMDB0290291

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCC\C=C\[C@@H](O)[C@H](COP([O-])(=O)OCC[N+](C)(C)C)NC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C41H77N2O9P/c1-6-8-10-11-12-13-14-15-16-17-22-26-38(45)37(33-52-53(49,50)51-31-30-43(3,4)5)42-41(48)27-23-19-18-21-25-35-36(40(47)32-39(35)46)29-28-34(44)24-20-9-7-2/h22,26,28-29,34-39,44-46H,6-21,23-25,27,30-33H2,1-5H3,(H-,42,48,49,50)/b26-22+,29-28+/t34-,35+,36+,37-,38+,39-/m0/s1

> <INCHI_KEY>
NDIDXPBPYBGLGV-JPTVWCGESA-N

> <FORMULA>
C41H77N2O9P

> <MOLECULAR_WEIGHT>
773.046

> <EXACT_MASS>
772.536669065

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
130

> <JCHEM_AVERAGE_POLARIZABILITY>
92.09076137699779

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}hexadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
3.03

> <JCHEM_LOGP>
3.4175294268615906

> <ALOGPS_LOGS>
-6.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.306136418769412

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8653047127576885

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9419020258143059

> <JCHEM_POLAR_SURFACE_AREA>
165.45

> <JCHEM_REFRACTIVITY>
225.97480000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
33

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.26e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}hexadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0290291
     RDKit          3D
SM(d16:1/PGD1)
130130  0  0  0  0  0  0  0  0999 V2000
  -12.4597   -6.6106   -0.9002 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7816   -5.2038   -0.4891 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1298   -4.1789   -1.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6316   -4.2563   -1.3986 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0113   -4.0523   -0.0309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5021   -4.1551   -0.2055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7779   -3.9630    1.0969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2840   -4.0705    0.8876 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7675   -3.0220   -0.0947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2723   -3.1751   -0.2649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6754   -2.1783   -1.1897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6935   -0.7758   -0.7788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857   -0.2657    0.3636 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0538    1.1848    0.6315 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1155    1.4057    1.5619 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8243    1.7455    1.2138 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0917    3.3271    1.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0276    3.9267    1.7591 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9333    5.5521    1.9021 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.7885    6.0379    0.9480 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3513    5.9034    3.4921 O   0  0  0  0  0  1  0  0  0  0  0  0
   -3.2411    6.4307    1.5349 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1154    6.1416    0.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1860    7.2392    0.4114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5874    8.5005    0.0815 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.6066    9.3990   -0.4204 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9668    9.1235    1.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5766    8.3943   -0.9496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6443    1.6291    0.4129 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3336    1.6560    0.9593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2125    1.7725    2.2003 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8461    1.5545    0.0373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1043    1.8795    0.8035 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2993    1.8566   -0.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5129    0.4761   -0.6827 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6997    0.4314   -1.5711 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.6824   -0.1335   -0.0213 C   0  0  1  0  0  0  0  0  0  0  0  0
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  -10.2257   -3.0344    0.3511 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.9965   -5.0802    0.5999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2114   -3.3193   -1.0961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0864   -2.0243    0.1596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9971   -4.2144   -0.5026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8298   -2.9781    0.7567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2772   -2.2386   -2.1512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6468   -2.4992   -1.5408 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4155   -0.9647    1.1469 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.6619    1.5451    2.2691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3550    3.5751    0.1799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9885    3.3710    1.8487 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7737    5.2407    0.7953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6299    5.9067   -0.3972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8801    6.8835   -0.3593 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7059    7.3016    1.3658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1693   10.2774   -0.9354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2537    8.8088   -1.1173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2465    9.6781    0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8938   10.2184    0.9788 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9333    8.7373    1.3405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5211    8.9400    2.1502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1743    9.4233   -1.1097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6989    7.7885   -0.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9730    8.0478   -1.9071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7696    1.5201   -0.6222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7320    2.2716   -0.8018 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8725    0.5429   -0.4015 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9795    2.8719    1.2838 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2653    1.1205    1.6192 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0484    2.5831   -0.9284 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1887    2.1781    0.4450 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6240    0.2276   -1.3660 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5125   -0.3374    0.0394 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5290    1.1992   -2.4027 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6609   -0.5388   -2.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7794    0.9132   -1.8278 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0075    1.7823   -0.5166 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6798    0.4416    0.2066 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0698   -0.5753    2.0178 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9200   -0.1864    2.7131 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6347   -2.0305    1.1475 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0906   -2.5148    2.0599 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1131   -1.4448   -1.7399 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9488   -1.7748    0.7856 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4810   -1.5803   -2.1792 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4578   -0.9330   -0.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9122   -2.2821    1.1781 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3480   -3.3005   -2.3474 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7698   -1.6084   -2.6717 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6448   -2.8908   -2.8502 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8809   -1.6389   -1.6576 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.1291   -3.5224   -1.1540 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8382   -4.7022   -1.2512 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.4338   -2.6635    1.0178 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0109   -3.8545    1.0554 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.5108   -5.6391    0.7211 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9377   -4.4727    0.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.7516   -4.6771    2.2335 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 19 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 25 28  1  0
 16 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 39 41  1  0
 41 42  1  0
 42 43  2  0
 42 44  1  0
 44 45  1  0
 45 46  2  0
 46 47  1  0
 47 48  1  0
 47 49  1  0
 49 50  1  0
 50 51  1  0
 51 52  1  0
 52 53  1  0
 44 38  1  0
  1 54  1  0
  1 55  1  0
  1 56  1  0
  2 57  1  0
  2 58  1  0
  3 59  1  0
  3 60  1  0
  4 61  1  0
  4 62  1  0
  5 63  1  0
  5 64  1  0
  6 65  1  0
  6 66  1  0
  7 67  1  0
  7 68  1  0
  8 69  1  0
  8 70  1  0
  9 71  1  0
  9 72  1  0
 10 73  1  0
 10 74  1  0
 11 75  1  0
 11 76  1  0
 12 77  1  0
 13 78  1  0
 14 79  1  6
 15 80  1  0
 16 81  1  1
 17 82  1  0
 17 83  1  0
 23 84  1  0
 23 85  1  0
 24 86  1  0
 24 87  1  0
 26 88  1  0
 26 89  1  0
 26 90  1  0
 27 91  1  0
 27 92  1  0
 27 93  1  0
 28 94  1  0
 28 95  1  0
 28 96  1  0
 29 97  1  0
 32 98  1  0
 32 99  1  0
 33100  1  0
 33101  1  0
 34102  1  0
 34103  1  0
 35104  1  0
 35105  1  0
 36106  1  0
 36107  1  0
 37108  1  0
 37109  1  0
 38110  1  1
 39111  1  1
 40112  1  0
 41113  1  0
 41114  1  0
 44115  1  6
 45116  1  0
 46117  1  0
 47118  1  1
 48119  1  0
 49120  1  0
 49121  1  0
 50122  1  0
 50123  1  0
 51124  1  0
 51125  1  0
 52126  1  0
 52127  1  0
 53128  1  0
 53129  1  0
 53130  1  0
M  CHG  2  21  -1  25   1
M  END

HEADER    PROTEIN                                 16-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-SEP-21         0                                  
HETATM    1  C   UNK     0       2.390 -21.617   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       1.056 -20.847   0.000  0.00  0.00           N+1
HETATM    3  C   UNK     0       0.286 -22.180   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.826 -19.513   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.278 -20.077   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.278 -18.537   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.611 -17.767   0.000  0.00  0.00           O+0
HETATM    8  P   UNK     0      -1.611 -16.227   0.000  0.00  0.00           P+0
HETATM    9  O   UNK     0      -3.151 -16.227   0.000  0.00  0.00           O-1
HETATM   10  O   UNK     0      -0.071 -16.227   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      -1.611 -14.687   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.278 -13.917   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.278 -12.377   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.611 -11.607   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -1.611 -10.067   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -2.945 -12.377   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.279 -11.607   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.613 -12.377   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -6.946 -11.607   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -8.280 -12.377   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -9.614 -11.607   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -10.947 -12.377   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -12.281 -11.607   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -13.615 -12.377   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -14.948 -11.607   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -16.282 -12.377   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -17.616 -11.607   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -18.949 -12.377   0.000  0.00  0.00           C+0
HETATM   29  N   UNK     0       1.056 -11.607   0.000  0.00  0.00           N+0
HETATM   30  C   UNK     0       2.390 -12.377   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       2.390 -13.917   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       3.723 -11.607   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       5.057 -12.377   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.391 -11.607   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       7.724 -12.377   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       9.058 -11.607   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      10.392 -12.377   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      11.725 -11.607   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      11.886 -10.075   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      10.742  -9.045   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      13.393  -9.755   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      14.163 -11.089   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      15.694 -11.250   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      13.132 -12.233   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      13.452 -13.740   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      12.308 -14.770   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      12.628 -16.276   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      11.484 -17.307   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      14.093 -16.752   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      14.413 -18.259   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      15.878 -18.734   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      16.198 -20.241   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      17.662 -20.717   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4    5                                             
CONECT    3    2                                                            
CONECT    4    2                                                            
CONECT    5    2    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   29                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   13   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   44                                                  
CONECT   39   38   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   38   45                                                  
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  106    0
END

COMPND    HMDB0290291
HETATM    1  C1  UNL     1     -12.460  -6.611  -0.900  1.00  0.00           C  
HETATM    2  C2  UNL     1     -12.782  -5.204  -0.489  1.00  0.00           C  
HETATM    3  C3  UNL     1     -12.130  -4.179  -1.376  1.00  0.00           C  
HETATM    4  C4  UNL     1     -10.632  -4.256  -1.399  1.00  0.00           C  
HETATM    5  C5  UNL     1     -10.011  -4.052  -0.031  1.00  0.00           C  
HETATM    6  C6  UNL     1      -8.502  -4.155  -0.205  1.00  0.00           C  
HETATM    7  C7  UNL     1      -7.778  -3.963   1.097  1.00  0.00           C  
HETATM    8  C8  UNL     1      -6.284  -4.071   0.888  1.00  0.00           C  
HETATM    9  C9  UNL     1      -5.767  -3.022  -0.095  1.00  0.00           C  
HETATM   10  C10 UNL     1      -4.272  -3.175  -0.265  1.00  0.00           C  
HETATM   11  C11 UNL     1      -3.675  -2.178  -1.190  1.00  0.00           C  
HETATM   12  C12 UNL     1      -3.693  -0.776  -0.779  1.00  0.00           C  
HETATM   13  C13 UNL     1      -4.086  -0.266   0.364  1.00  0.00           C  
HETATM   14  C14 UNL     1      -4.054   1.185   0.631  1.00  0.00           C  
HETATM   15  O1  UNL     1      -5.115   1.406   1.562  1.00  0.00           O  
HETATM   16  C15 UNL     1      -2.824   1.746   1.214  1.00  0.00           C  
HETATM   17  C16 UNL     1      -3.092   3.327   1.222  1.00  0.00           C  
HETATM   18  O2  UNL     1      -2.028   3.927   1.759  1.00  0.00           O  
HETATM   19  P1  UNL     1      -1.933   5.552   1.902  1.00  0.00           P  
HETATM   20  O3  UNL     1      -0.789   6.038   0.948  1.00  0.00           O  
HETATM   21  O4  UNL     1      -1.351   5.903   3.492  1.00  0.00           O1-
HETATM   22  O5  UNL     1      -3.241   6.431   1.535  1.00  0.00           O  
HETATM   23  C17 UNL     1      -4.115   6.142   0.568  1.00  0.00           C  
HETATM   24  C18 UNL     1      -5.186   7.239   0.411  1.00  0.00           C  
HETATM   25  N1  UNL     1      -4.587   8.501   0.082  1.00  0.00           N1+
HETATM   26  C19 UNL     1      -5.607   9.399  -0.420  1.00  0.00           C  
HETATM   27  C20 UNL     1      -3.967   9.124   1.223  1.00  0.00           C  
HETATM   28  C21 UNL     1      -3.577   8.394  -0.950  1.00  0.00           C  
HETATM   29  N2  UNL     1      -1.644   1.629   0.413  1.00  0.00           N  
HETATM   30  C22 UNL     1      -0.334   1.656   0.959  1.00  0.00           C  
HETATM   31  O6  UNL     1      -0.212   1.772   2.200  1.00  0.00           O  
HETATM   32  C23 UNL     1       0.846   1.554   0.037  1.00  0.00           C  
HETATM   33  C24 UNL     1       2.104   1.879   0.804  1.00  0.00           C  
HETATM   34  C25 UNL     1       3.299   1.857  -0.093  1.00  0.00           C  
HETATM   35  C26 UNL     1       3.513   0.476  -0.683  1.00  0.00           C  
HETATM   36  C27 UNL     1       4.700   0.431  -1.571  1.00  0.00           C  
HETATM   37  C28 UNL     1       6.007   0.724  -0.986  1.00  0.00           C  
HETATM   38  C29 UNL     1       6.682  -0.133  -0.021  1.00  0.00           C  
HETATM   39  C30 UNL     1       6.161  -0.511   1.287  1.00  0.00           C  
HETATM   40  O7  UNL     1       5.275   0.303   1.927  1.00  0.00           O  
HETATM   41  C31 UNL     1       5.715  -1.958   1.159  1.00  0.00           C  
HETATM   42  C32 UNL     1       6.417  -2.475  -0.035  1.00  0.00           C  
HETATM   43  O8  UNL     1       6.310  -3.624  -0.425  1.00  0.00           O  
HETATM   44  C33 UNL     1       7.242  -1.414  -0.663  1.00  0.00           C  
HETATM   45  C34 UNL     1       8.669  -1.644  -0.252  1.00  0.00           C  
HETATM   46  C35 UNL     1       9.648  -1.698  -1.131  1.00  0.00           C  
HETATM   47  C36 UNL     1      11.104  -1.932  -0.702  1.00  0.00           C  
HETATM   48  O9  UNL     1      10.942  -2.835   0.346  1.00  0.00           O  
HETATM   49  C37 UNL     1      11.884  -2.415  -1.851  1.00  0.00           C  
HETATM   50  C38 UNL     1      13.318  -2.658  -1.742  1.00  0.00           C  
HETATM   51  C39 UNL     1      14.001  -3.614  -0.899  1.00  0.00           C  
HETATM   52  C40 UNL     1      13.966  -3.567   0.582  1.00  0.00           C  
HETATM   53  C41 UNL     1      14.897  -4.711   1.137  1.00  0.00           C  
HETATM   54  H1  UNL     1     -12.518  -6.730  -1.993  1.00  0.00           H  
HETATM   55  H2  UNL     1     -11.476  -6.889  -0.478  1.00  0.00           H  
HETATM   56  H3  UNL     1     -13.250  -7.267  -0.440  1.00  0.00           H  
HETATM   57  H4  UNL     1     -12.571  -5.091   0.573  1.00  0.00           H  
HETATM   58  H5  UNL     1     -13.882  -5.076  -0.618  1.00  0.00           H  
HETATM   59  H6  UNL     1     -12.507  -3.158  -1.189  1.00  0.00           H  
HETATM   60  H7  UNL     1     -12.461  -4.429  -2.428  1.00  0.00           H  
HETATM   61  H8  UNL     1     -10.273  -3.428  -2.040  1.00  0.00           H  
HETATM   62  H9  UNL     1     -10.347  -5.208  -1.854  1.00  0.00           H  
HETATM   63  H10 UNL     1     -10.388  -4.773   0.710  1.00  0.00           H  
HETATM   64  H11 UNL     1     -10.226  -3.034   0.351  1.00  0.00           H  
HETATM   65  H12 UNL     1      -8.202  -5.131  -0.633  1.00  0.00           H  
HETATM   66  H13 UNL     1      -8.232  -3.375  -0.943  1.00  0.00           H  
HETATM   67  H14 UNL     1      -8.044  -2.977   1.559  1.00  0.00           H  
HETATM   68  H15 UNL     1      -8.053  -4.745   1.822  1.00  0.00           H  
HETATM   69  H16 UNL     1      -5.821  -3.872   1.894  1.00  0.00           H  
HETATM   70  H17 UNL     1      -5.996  -5.080   0.600  1.00  0.00           H  
HETATM   71  H18 UNL     1      -6.211  -3.319  -1.096  1.00  0.00           H  
HETATM   72  H19 UNL     1      -6.086  -2.024   0.160  1.00  0.00           H  
HETATM   73  H20 UNL     1      -3.997  -4.214  -0.503  1.00  0.00           H  
HETATM   74  H21 UNL     1      -3.830  -2.978   0.757  1.00  0.00           H  
HETATM   75  H22 UNL     1      -4.277  -2.239  -2.151  1.00  0.00           H  
HETATM   76  H23 UNL     1      -2.647  -2.499  -1.541  1.00  0.00           H  
HETATM   77  H24 UNL     1      -3.334  -0.028  -1.524  1.00  0.00           H  
HETATM   78  H25 UNL     1      -4.415  -0.965   1.147  1.00  0.00           H  
HETATM   79  H26 UNL     1      -4.347   1.692  -0.330  1.00  0.00           H  
HETATM   80  H27 UNL     1      -4.715   1.113   2.439  1.00  0.00           H  
HETATM   81  H28 UNL     1      -2.662   1.545   2.269  1.00  0.00           H  
HETATM   82  H29 UNL     1      -3.355   3.575   0.180  1.00  0.00           H  
HETATM   83  H30 UNL     1      -3.989   3.371   1.849  1.00  0.00           H  
HETATM   84  H31 UNL     1      -4.774   5.241   0.795  1.00  0.00           H  
HETATM   85  H32 UNL     1      -3.630   5.907  -0.397  1.00  0.00           H  
HETATM   86  H33 UNL     1      -5.880   6.883  -0.359  1.00  0.00           H  
HETATM   87  H34 UNL     1      -5.706   7.302   1.366  1.00  0.00           H  
HETATM   88  H35 UNL     1      -5.169  10.277  -0.935  1.00  0.00           H  
HETATM   89  H36 UNL     1      -6.254   8.809  -1.117  1.00  0.00           H  
HETATM   90  H37 UNL     1      -6.247   9.678   0.448  1.00  0.00           H  
HETATM   91  H38 UNL     1      -3.894  10.218   0.979  1.00  0.00           H  
HETATM   92  H39 UNL     1      -2.933   8.737   1.341  1.00  0.00           H  
HETATM   93  H40 UNL     1      -4.521   8.940   2.150  1.00  0.00           H  
HETATM   94  H41 UNL     1      -3.174   9.423  -1.110  1.00  0.00           H  
HETATM   95  H42 UNL     1      -2.699   7.788  -0.605  1.00  0.00           H  
HETATM   96  H43 UNL     1      -3.973   8.048  -1.907  1.00  0.00           H  
HETATM   97  H44 UNL     1      -1.770   1.520  -0.622  1.00  0.00           H  
HETATM   98  H45 UNL     1       0.732   2.272  -0.802  1.00  0.00           H  
HETATM   99  H46 UNL     1       0.873   0.543  -0.402  1.00  0.00           H  
HETATM  100  H47 UNL     1       1.980   2.872   1.284  1.00  0.00           H  
HETATM  101  H48 UNL     1       2.265   1.120   1.619  1.00  0.00           H  
HETATM  102  H49 UNL     1       3.048   2.583  -0.928  1.00  0.00           H  
HETATM  103  H50 UNL     1       4.189   2.178   0.445  1.00  0.00           H  
HETATM  104  H51 UNL     1       2.624   0.228  -1.366  1.00  0.00           H  
HETATM  105  H52 UNL     1       3.513  -0.337   0.039  1.00  0.00           H  
HETATM  106  H53 UNL     1       4.529   1.199  -2.403  1.00  0.00           H  
HETATM  107  H54 UNL     1       4.661  -0.539  -2.135  1.00  0.00           H  
HETATM  108  H55 UNL     1       6.779   0.913  -1.828  1.00  0.00           H  
HETATM  109  H56 UNL     1       6.008   1.782  -0.517  1.00  0.00           H  
HETATM  110  H57 UNL     1       7.680   0.442   0.207  1.00  0.00           H  
HETATM  111  H58 UNL     1       7.070  -0.575   2.018  1.00  0.00           H  
HETATM  112  H59 UNL     1       4.920  -0.186   2.713  1.00  0.00           H  
HETATM  113  H60 UNL     1       4.635  -2.031   1.147  1.00  0.00           H  
HETATM  114  H61 UNL     1       6.091  -2.515   2.060  1.00  0.00           H  
HETATM  115  H62 UNL     1       7.113  -1.445  -1.740  1.00  0.00           H  
HETATM  116  H63 UNL     1       8.949  -1.775   0.786  1.00  0.00           H  
HETATM  117  H64 UNL     1       9.481  -1.580  -2.179  1.00  0.00           H  
HETATM  118  H65 UNL     1      11.458  -0.933  -0.388  1.00  0.00           H  
HETATM  119  H66 UNL     1      10.912  -2.282   1.178  1.00  0.00           H  
HETATM  120  H67 UNL     1      11.348  -3.301  -2.347  1.00  0.00           H  
HETATM  121  H68 UNL     1      11.770  -1.608  -2.672  1.00  0.00           H  
HETATM  122  H69 UNL     1      13.645  -2.891  -2.850  1.00  0.00           H  
HETATM  123  H70 UNL     1      13.881  -1.639  -1.658  1.00  0.00           H  
HETATM  124  H71 UNL     1      15.129  -3.522  -1.154  1.00  0.00           H  
HETATM  125  H72 UNL     1      13.838  -4.702  -1.251  1.00  0.00           H  
HETATM  126  H73 UNL     1      14.434  -2.663   1.018  1.00  0.00           H  
HETATM  127  H74 UNL     1      13.011  -3.854   1.055  1.00  0.00           H  
HETATM  128  H75 UNL     1      14.511  -5.639   0.721  1.00  0.00           H  
HETATM  129  H76 UNL     1      15.938  -4.473   0.929  1.00  0.00           H  
HETATM  130  H77 UNL     1      14.752  -4.677   2.233  1.00  0.00           H  
CONECT    1    2   54   55   56
CONECT    2    3   57   58
CONECT    3    4   59   60
CONECT    4    5   61   62
CONECT    5    6   63   64
CONECT    6    7   65   66
CONECT    7    8   67   68
CONECT    8    9   69   70
CONECT    9   10   71   72
CONECT   10   11   73   74
CONECT   11   12   75   76
CONECT   12   13   13   77
CONECT   13   14   78
CONECT   14   15   16   79
CONECT   15   80
CONECT   16   17   29   81
CONECT   17   18   82   83
CONECT   18   19
CONECT   19   20   20   21   22
CONECT   22   23
CONECT   23   24   84   85
CONECT   24   25   86   87
CONECT   25   26   27   28
CONECT   26   88   89   90
CONECT   27   91   92   93
CONECT   28   94   95   96
CONECT   29   30   97
CONECT   30   31   31   32
CONECT   32   33   98   99
CONECT   33   34  100  101
CONECT   34   35  102  103
CONECT   35   36  104  105
CONECT   36   37  106  107
CONECT   37   38  108  109
CONECT   38   39   44  110
CONECT   39   40   41  111
CONECT   40  112
CONECT   41   42  113  114
CONECT   42   43   43   44
CONECT   44   45  115
CONECT   45   46   46  116
CONECT   46   47  117
CONECT   47   48   49  118
CONECT   48  119
CONECT   49   50  120  121
CONECT   50   51  122  123
CONECT   51   52  124  125
CONECT   52   53  126  127
CONECT   53  128  129  130
END

HMDB0290291
     RDKit          3D
SM(d16:1/PGD1)
130130  0  0  0  0  0  0  0  0999 V2000
  -12.4597   -6.6106   -0.9002 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7816   -5.2038   -0.4891 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1298   -4.1789   -1.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6316   -4.2563   -1.3986 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0113   -4.0523   -0.0309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5021   -4.1551   -0.2055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7779   -3.9630    1.0969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2840   -4.0705    0.8876 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7675   -3.0220   -0.0947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2723   -3.1751   -0.2649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6754   -2.1783   -1.1897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6935   -0.7758   -0.7788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857   -0.2657    0.3636 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0538    1.1848    0.6315 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1155    1.4057    1.5619 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8243    1.7455    1.2138 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0917    3.3271    1.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0276    3.9267    1.7591 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9333    5.5521    1.9021 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.7885    6.0379    0.9480 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3513    5.9034    3.4921 O   0  0  0  0  0  1  0  0  0  0  0  0
   -3.2411    6.4307    1.5349 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1154    6.1416    0.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1860    7.2392    0.4114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5874    8.5005    0.0815 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.6066    9.3990   -0.4204 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9668    9.1235    1.2230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5766    8.3943   -0.9496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6443    1.6291    0.4129 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3336    1.6560    0.9593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2125    1.7725    2.2003 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8461    1.5545    0.0373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1043    1.8795    0.8035 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2993    1.8566   -0.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5129    0.4761   -0.6827 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6997    0.4314   -1.5711 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0073    0.7240   -0.9857 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6824   -0.1335   -0.0213 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1614   -0.5112    1.2866 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2748    0.3027    1.9267 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7154   -1.9576    1.1585 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4170   -2.4749   -0.0350 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3101   -3.6240   -0.4246 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2422   -1.4141   -0.6628 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.6686   -1.6440   -0.2520 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6476   -1.6978   -1.1308 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1043   -1.9323   -0.7020 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.9415   -2.8350    0.3459 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8844   -2.4148   -1.8510 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3185   -2.6582   -1.7425 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0012   -3.6141   -0.8987 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9659   -3.5673    0.5822 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8971   -4.7114    1.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  21  -1  25   1
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₄₁H₇₇N₂O₉P

Average Molecular Weight

773.046

Monoisotopic Molecular Weight

772.536669065

IUPAC Name

(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}hexadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}hexadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCC\C=C\[C@@H](O)[C@H](COP([O-])(=O)OCC[N+](C)(C)C)NC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C41H77N2O9P/c1-6-8-10-11-12-13-14-15-16-17-22-26-38(45)37(33-52-53(49,50)51-31-30-43(3,4)5)42-41(48)27-23-19-18-21-25-35-36(40(47)32-39(35)46)29-28-34(44)24-20-9-7-2/h22,26,28-29,34-39,44-46H,6-21,23-25,27,30-33H2,1-5H3,(H-,42,48,49,50)/b26-22+,29-28+/t34-,35+,36+,37-,38+,39-/m0/s1

InChI Key

NDIDXPBPYBGLGV-JPTVWCGESA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Physiological effect

Health effect

Pick's disease (PMID: 32310589)
Diabetes mellitus type 2 (PMID: 30310470)
Diabetes mellitus type 1 (PMID: 30310470)
Insulin resistance (PMID: 21844222)
Atherosclerosis (PMID: 17963772)

Circulatory system disorder

Cardiac disorder

Cardiovascular disease (PMID: 30310470)

Disposition

Biological location

Cellular substructure

cell membrane (PMID: 9009829)
golgi apparatus membrane (PMID: 11062253)

Organelle

endoplasmic reticulum (PMID: 9009829)

Cell

All cells and tissues (HMDB: HMDB0290291)

Process

Naturally occurring process

Biological process

Cellular process

Signal transduction (PMID: 8086039)

Role

Biological role

Nutrient

Nutrient (PMID: 23684760)

Industrial application

Pharmaceutical industry

Biomarker

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	3.03	ALOGPS
logP	3.42	ChemAxon
logS	-6.8	ALOGPS
pKa (Strongest Acidic)	1.87	ChemAxon
pKa (Strongest Basic)	-0.94	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	165.45 Å²	ChemAxon
Rotatable Bond Count	33	ChemAxon
Refractivity	225.97 m³·mol⁻¹	ChemAxon
Polarizability	92.09 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	286.821	32859911
AllCCS	[M+H-H2O]+	286.774	32859911
AllCCS	[M+Na]+	286.829	32859911
AllCCS	[M+NH4]+	286.832	32859911
AllCCS	[M-H]-	281.478	32859911
AllCCS	[M+Na-2H]-	285.558	32859911
AllCCS	[M+HCOO]-	290.078	32859911
DeepCCS	[M+H]+	270.149	30932474
DeepCCS	[M-H]-	268.328	30932474
DeepCCS	[M-2H]-	302.359	30932474
DeepCCS	[M+Na]+	276.612	30932474

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 10V, Positive-QTOF	splash10-00e9-0600000900-d7fbe8ebfd62cb11bb22	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 20V, Positive-QTOF	splash10-00e9-0600000900-d7fbe8ebfd62cb11bb22	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 40V, Positive-QTOF	splash10-001i-0900000300-d9cf47a8709fca2f55db	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 10V, Positive-QTOF	splash10-004i-0000010900-193b66232ee2a0a37adb	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 20V, Positive-QTOF	splash10-004k-0000070900-4f22dff3ee4e55ee8811	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 40V, Positive-QTOF	splash10-0002-0000090200-70d46f901bf4f10912ac	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 10V, Positive-QTOF	splash10-0002-0000001900-7b0a1da732fba7306860	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 20V, Positive-QTOF	splash10-03dk-0000007900-27a8fa9772edab0d6268	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d16:1/PGD1) 40V, Positive-QTOF	splash10-03di-0000039300-0ef3b6592dd52e3d8164	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for SM(d16:1/PGD1) (HMDB0290291)

MOL for HMDB0290291 (SM(d16:1/PGD1))

3D MOL for HMDB0290291 (SM(d16:1/PGD1))

3D SDF for HMDB0290291 (SM(d16:1/PGD1))

3D-SDF for HMDB0290291 (SM(d16:1/PGD1))

PDB for HMDB0290291 (SM(d16:1/PGD1))

3D PDB for HMDB0290291 (SM(d16:1/PGD1))

SMILES for HMDB0290291 (SM(d16:1/PGD1))

INCHI for HMDB0290291 (SM(d16:1/PGD1))

Structure for HMDB0290291 (SM(d16:1/PGD1))

3D Structure for HMDB0290291 (SM(d16:1/PGD1))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

MS/MS Spectra