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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-16 05:53:12 UTC

Update Date

2022-11-30 20:07:17 UTC

HMDB ID

HMDB0290707

Secondary Accession Numbers

None

Metabolite Identification

Common Name

SM(d19:1/PGD1)

Description

SM(d19:1/PGD1) is a type of oxidized sphingolipid found in animal cell membranes. It usually consists of phosphorylcholine and ceramide. SM(d19:1/PGD1) consists of a sphingosine backbone and a Prostaglandin D1 chain. In humans, sphingomyelin is the only membrane phospholipid not derived from glycerol. Like all sphingolipids, SM has a ceramide core (sphingosine bonded to a fatty acid via an amide linkage). In addition, it contains one polar head group, which is either phosphocholine or phosphoethanolamine. The plasma membrane of cells is highly enriched in sphingomyelin and is considered largely to be found in the exoplasmic leaflet of the cell membrane. However, there is some evidence that there may also be a sphingomyelin pool in the inner leaflet of the membrane. Moreover, neutral sphingomyelinase-2, an enzyme that breaks down sphingomyelin into ceramide, has been found to localize exclusively to the inner leaflet further suggesting that there may be sphingomyelin present there. Sphingomyelin can accumulate in a rare hereditary disease called Niemann-Pick Disease, types A and B. Niemann-Pick disease is a genetically-inherited disease caused by a deficiency in the enzyme sphingomyelinase, which causes the accumulation of sphingomyelin in spleen, liver, lungs, bone marrow, and the brain, causing irreversible neurological damage. SMs play a role in signal transduction. Sphingomyelins are synthesized by the transfer of phosphorylcholine from phosphatidylcholine to a ceramide in a reaction catalyzed by sphingomyelin synthase.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309162107532D          

 56 56  0  0  1  0            999 V2000
   -5.0298   -4.4759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3154   -4.8884    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   -3.9029   -4.1739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7279   -5.6028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6009   -5.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6009   -6.1259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8864   -6.5384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8864   -7.3634    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0614   -7.3634    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -3.7114   -7.3634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8864   -8.1884    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6009   -8.6009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6009   -9.4259    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8864   -9.8384    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8864  -10.6634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1719   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4575   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7430   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0285   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6859   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4004   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1149   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8294   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5438   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2583   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9728   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6872   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4017   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1162   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8306   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5451   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3154   -9.8384    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0298   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0298   -8.6009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7443   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4588   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1732   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8877   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6022   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3167   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0311   -9.8384    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  -10.1174  -10.6588    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.5043  -11.2109    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9243  -10.8304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3368  -10.1159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1573  -10.0297    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7848   -9.5028    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -10.9563   -8.6958    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3432   -8.1438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5148   -7.3368    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.9017   -6.7848    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2994   -7.0819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4709   -6.2749    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2555   -6.0200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.4271   -5.2130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2117   -4.9581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 13 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  1  1  0  0  0
 42 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  2  0  0  0  0
 45 47  1  0  0  0  0
 41 47  1  0  0  0  0
 47 48  1  6  0  0  0
 48 49  2  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  6  0  0  0
 50 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  CHG  2   2   1   9  -1
M  END

HMDB0290707
     RDKit          3D
SM(d19:1/PGD1)
139139  0  0  0  0  0  0  0  0999 V2000
   -5.3933   13.5752   11.0807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6961   12.7593    9.8548 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5207   11.2673   10.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8582   10.5603    8.8654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7634    9.0564    8.9414 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1254    8.5040    7.5863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0629    7.0017    7.5803 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4559    6.4871    6.1873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5097    7.0655    5.1488 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0859    6.6714    5.3423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8751    5.1785    5.1938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4108    4.8302    5.3921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2002    3.3595    5.1520 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7334    2.9913    5.3482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5158    1.5504    5.0175 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3498    1.2213    4.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6042   -0.1855    3.6492 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5246   -0.6480    2.9176 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8072   -0.4162    2.8086 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9339    0.5577    1.6283 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2400    0.4855    1.1647 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4816    1.5609   -0.1077 P   0  0  0  0  0  5  0  0  0  0  0  0
    2.2633    1.7248   -0.9649 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8756    3.0823    0.5833 O   0  0  0  0  0  1  0  0  0  0  0  0
    4.8514    1.0992   -1.0086 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4750    0.5467   -2.2280 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7379    0.1498   -2.9589 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4720   -0.4429   -4.2359 N   0  0  0  0  0  4  0  0  0  0  0  0
    5.9088    0.3891   -5.3448 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0666   -0.7202   -4.4477 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2047   -1.6998   -4.3166 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9814   -1.7789    2.4622 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7529   -2.4288    1.5052 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4805   -1.8472    0.6861 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7571   -3.9484    1.3899 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1053   -4.3123   -0.0524 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1896   -5.7805   -0.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4403   -6.1598   -1.7230 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2532   -5.7220   -2.5744 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0003   -6.4373   -2.1048 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0767   -7.9091   -2.2758 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1667   -8.6270   -1.6743 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3322   -8.1921   -2.2873 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0961  -10.0556   -2.2044 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8656   -9.8440   -3.4756 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3921  -10.6807   -4.1318 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8167   -8.3692   -3.7156 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6217   -7.8509   -4.7769 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9992   -7.1822   -5.7661 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6483   -6.5798   -6.9441 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5680   -7.4299   -7.5495 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5603   -6.2149   -7.9315 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0881   -5.6124   -9.1756 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8728   -4.3581   -8.9470 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3695   -3.7921  -10.2801 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2405   -4.7894  -10.9874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3053   13.7603   11.7077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0808   14.6088   10.7549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6390   13.1106   11.7261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7725   12.9484    9.5833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0374   13.0198    9.0012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4294   11.1594   10.4256 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1678   10.9593   10.9922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8802   10.9015    8.5905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1638   10.9668    8.0837 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7505    8.7652    9.2118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4640    8.7266    9.7357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3858    8.9126    6.8634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1422    8.8468    7.2917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8389    6.6532    8.2877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0974    6.6160    7.8945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3891    5.3924    6.2039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5005    6.7923    6.0075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8400    6.5937    4.1717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6676    8.1501    5.0155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7365    7.0119    6.3547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4639    7.1586    4.5499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4405    4.5758    5.9252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1311    4.8995    4.1580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8000    5.4645    4.7062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0698    5.0234    6.4389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7921    2.7999    5.9142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5291    3.0436    4.1619 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5571    3.0884    6.4426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0662    3.6458    4.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0486    0.8074    5.5642 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8249    2.0779    3.5710 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6358   -0.7894    4.5645 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2482   -0.9514    2.0349 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7649   -0.1267    3.3859 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7948    1.5781    2.0096 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1803    0.3553    0.8432 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9179    1.3477   -2.7634 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8105   -0.3079   -2.0472 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4185    1.0210   -3.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2867   -0.5673   -2.3180 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9647   -0.2700   -6.2353 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9356    0.7881   -5.1761 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1773    1.1891   -5.5967 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9807   -1.2108   -5.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4556    0.2058   -4.4443 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1146   -4.6458   -2.4314 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1932   -6.0715   -2.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7825   -6.1340   -1.0755 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9465   -8.4267   -1.9135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1610   -8.5839   -0.5886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0362   -8.8448   -2.3895 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.8526  -10.5631   -2.4610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3008   -8.1771   -3.8756 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
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 31103  1  0
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 36110  1  0
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 40117  1  0
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 42120  1  1
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 47124  1  6
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 50127  1  1
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 53132  1  0
 54133  1  0
 54134  1  0
 55135  1  0
 55136  1  0
 56137  1  0
 56138  1  0
 56139  1  0
M  CHG  2  24  -1  28   1
M  END


  Mrv1652309162107532D          

 56 56  0  0  1  0            999 V2000
   -5.0298   -4.4759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3154   -4.8884    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   -3.9029   -4.1739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7279   -5.6028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6009   -5.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6009   -6.1259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8864   -6.5384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8864   -7.3634    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0614   -7.3634    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
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   -2.8864   -8.1884    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8864  -10.6634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1719   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5438   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2583   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9728   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6872   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4017   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1162   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8306   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5451   -9.8384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3154   -9.8384    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0298   -9.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0298   -8.6009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.0311   -9.8384    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  -10.1174  -10.6588    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.5043  -11.2109    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9243  -10.8304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3368  -10.1159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1573  -10.0297    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7848   -9.5028    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -9.9017   -6.7848    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2994   -7.0819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4709   -6.2749    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2555   -6.0200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.4271   -5.2130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2117   -4.9581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
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  8 10  2  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
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 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
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 23 24  1  0  0  0  0
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 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 13 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  1  1  0  0  0
 42 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  2  0  0  0  0
 45 47  1  0  0  0  0
 41 47  1  0  0  0  0
 47 48  1  6  0  0  0
 48 49  2  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  6  0  0  0
 50 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  CHG  2   2   1   9  -1
M  END
> <DATABASE_ID>
HMDB0290707

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCC\C=C\[C@@H](O)[C@H](COP([O-])(=O)OCC[N+](C)(C)C)NC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C44H83N2O9P/c1-6-8-10-11-12-13-14-15-16-17-18-19-20-25-29-41(48)40(36-55-56(52,53)54-34-33-46(3,4)5)45-44(51)30-26-22-21-24-28-38-39(43(50)35-42(38)49)32-31-37(47)27-23-9-7-2/h25,29,31-32,37-42,47-49H,6-24,26-28,30,33-36H2,1-5H3,(H-,45,51,52,53)/b29-25+,32-31+/t37-,38+,39+,40-,41+,42-/m0/s1

> <INCHI_KEY>
LCSSNMGGVXEQGG-QNBQUTEKSA-N

> <FORMULA>
C44H83N2O9P

> <MOLECULAR_WEIGHT>
815.127

> <EXACT_MASS>
814.583619259

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
139

> <JCHEM_AVERAGE_POLARIZABILITY>
98.48657547129655

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}nonadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
3.71

> <JCHEM_LOGP>
4.75123542186159

> <ALOGPS_LOGS>
-7.03

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.306136418769412

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8653047127576885

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9419020258143059

> <JCHEM_POLAR_SURFACE_AREA>
165.45

> <JCHEM_REFRACTIVITY>
239.7778000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
36

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.08e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}nonadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0290707
     RDKit          3D
SM(d19:1/PGD1)
139139  0  0  0  0  0  0  0  0999 V2000
   -5.3933   13.5752   11.0807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6961   12.7593    9.8548 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5207   11.2673   10.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8582   10.5603    8.8654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7634    9.0564    8.9414 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1254    8.5040    7.5863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0629    7.0017    7.5803 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4559    6.4871    6.1873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5097    7.0655    5.1488 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0859    6.6714    5.3423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8751    5.1785    5.1938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4108    4.8302    5.3921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2002    3.3595    5.1520 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7334    2.9913    5.3482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5158    1.5504    5.0175 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3498    1.2213    4.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6042   -0.1855    3.6492 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5246   -0.6480    2.9176 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  24  -1  28   1
M  END

HEADER    PROTEIN                                 16-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-SEP-21         0                                  
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HETATM   40  C   UNK     0     -17.391 -17.595   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -18.725 -18.365   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -18.886 -19.896   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0     -17.741 -20.927   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0     -20.392 -20.217   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -21.162 -18.883   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0     -22.694 -18.722   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0     -20.132 -17.739   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -20.452 -16.232   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0     -19.307 -15.202   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0     -19.628 -13.695   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0     -18.483 -12.665   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0     -21.092 -13.220   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0     -21.412 -11.713   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0     -22.877 -11.237   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -23.197  -9.731   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0     -24.662  -9.255   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4    5                                             
CONECT    3    2                                                            
CONECT    4    2                                                            
CONECT    5    2    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   32                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32   13   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   47                                                  
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46   47                                                  
CONECT   46   45                                                            
CONECT   47   45   41   48                                                  
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51   52                                                  
CONECT   51   50                                                            
CONECT   52   50   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  112    0
END

COMPND    HMDB0290707
HETATM    1  C1  UNL     1      -5.393  13.575  11.081  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.696  12.759   9.855  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.521  11.267  10.159  1.00  0.00           C  
HETATM    4  C4  UNL     1      -5.858  10.560   8.865  1.00  0.00           C  
HETATM    5  C5  UNL     1      -5.763   9.056   8.941  1.00  0.00           C  
HETATM    6  C6  UNL     1      -6.125   8.504   7.586  1.00  0.00           C  
HETATM    7  C7  UNL     1      -6.063   7.002   7.580  1.00  0.00           C  
HETATM    8  C8  UNL     1      -6.456   6.487   6.187  1.00  0.00           C  
HETATM    9  C9  UNL     1      -5.510   7.066   5.149  1.00  0.00           C  
HETATM   10  C10 UNL     1      -4.086   6.671   5.342  1.00  0.00           C  
HETATM   11  C11 UNL     1      -3.875   5.179   5.194  1.00  0.00           C  
HETATM   12  C12 UNL     1      -2.411   4.830   5.392  1.00  0.00           C  
HETATM   13  C13 UNL     1      -2.200   3.359   5.152  1.00  0.00           C  
HETATM   14  C14 UNL     1      -0.733   2.991   5.348  1.00  0.00           C  
HETATM   15  C15 UNL     1      -0.516   1.550   5.018  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.350   1.221   4.029  1.00  0.00           C  
HETATM   17  C17 UNL     1       0.604  -0.185   3.649  1.00  0.00           C  
HETATM   18  O1  UNL     1      -0.525  -0.648   2.918  1.00  0.00           O  
HETATM   19  C18 UNL     1       1.807  -0.416   2.809  1.00  0.00           C  
HETATM   20  C19 UNL     1       1.934   0.558   1.628  1.00  0.00           C  
HETATM   21  O2  UNL     1       3.240   0.485   1.165  1.00  0.00           O  
HETATM   22  P1  UNL     1       3.482   1.561  -0.108  1.00  0.00           P  
HETATM   23  O3  UNL     1       2.263   1.725  -0.965  1.00  0.00           O  
HETATM   24  O4  UNL     1       3.876   3.082   0.583  1.00  0.00           O1-
HETATM   25  O5  UNL     1       4.851   1.099  -1.009  1.00  0.00           O  
HETATM   26  C20 UNL     1       4.475   0.547  -2.228  1.00  0.00           C  
HETATM   27  C21 UNL     1       5.738   0.150  -2.959  1.00  0.00           C  
HETATM   28  N1  UNL     1       5.472  -0.443  -4.236  1.00  0.00           N1+
HETATM   29  C22 UNL     1       5.909   0.389  -5.345  1.00  0.00           C  
HETATM   30  C23 UNL     1       4.067  -0.720  -4.448  1.00  0.00           C  
HETATM   31  C24 UNL     1       6.205  -1.700  -4.317  1.00  0.00           C  
HETATM   32  N2  UNL     1       1.981  -1.779   2.462  1.00  0.00           N  
HETATM   33  C25 UNL     1       2.753  -2.429   1.505  1.00  0.00           C  
HETATM   34  O6  UNL     1       3.480  -1.847   0.686  1.00  0.00           O  
HETATM   35  C26 UNL     1       2.757  -3.948   1.390  1.00  0.00           C  
HETATM   36  C27 UNL     1       3.105  -4.312  -0.052  1.00  0.00           C  
HETATM   37  C28 UNL     1       3.190  -5.781  -0.259  1.00  0.00           C  
HETATM   38  C29 UNL     1       3.440  -6.160  -1.723  1.00  0.00           C  
HETATM   39  C30 UNL     1       2.253  -5.722  -2.574  1.00  0.00           C  
HETATM   40  C31 UNL     1       1.000  -6.437  -2.105  1.00  0.00           C  
HETATM   41  C32 UNL     1       1.077  -7.909  -2.276  1.00  0.00           C  
HETATM   42  C33 UNL     1      -0.167  -8.627  -1.674  1.00  0.00           C  
HETATM   43  O7  UNL     1      -1.332  -8.192  -2.287  1.00  0.00           O  
HETATM   44  C34 UNL     1       0.096 -10.056  -2.204  1.00  0.00           C  
HETATM   45  C35 UNL     1       0.866  -9.844  -3.476  1.00  0.00           C  
HETATM   46  O8  UNL     1       1.392 -10.681  -4.132  1.00  0.00           O  
HETATM   47  C36 UNL     1       0.817  -8.369  -3.716  1.00  0.00           C  
HETATM   48  C37 UNL     1       1.622  -7.851  -4.777  1.00  0.00           C  
HETATM   49  C38 UNL     1       0.999  -7.182  -5.766  1.00  0.00           C  
HETATM   50  C39 UNL     1       1.648  -6.580  -6.944  1.00  0.00           C  
HETATM   51  O9  UNL     1       2.568  -7.430  -7.549  1.00  0.00           O  
HETATM   52  C40 UNL     1       0.560  -6.215  -7.932  1.00  0.00           C  
HETATM   53  C41 UNL     1       1.088  -5.612  -9.176  1.00  0.00           C  
HETATM   54  C42 UNL     1       1.873  -4.358  -8.947  1.00  0.00           C  
HETATM   55  C43 UNL     1       2.369  -3.792 -10.280  1.00  0.00           C  
HETATM   56  C44 UNL     1       3.241  -4.789 -10.987  1.00  0.00           C  
HETATM   57  H1  UNL     1      -6.305  13.760  11.708  1.00  0.00           H  
HETATM   58  H2  UNL     1      -5.081  14.609  10.755  1.00  0.00           H  
HETATM   59  H3  UNL     1      -4.639  13.111  11.726  1.00  0.00           H  
HETATM   60  H4  UNL     1      -6.772  12.948   9.583  1.00  0.00           H  
HETATM   61  H5  UNL     1      -5.037  13.020   9.001  1.00  0.00           H  
HETATM   62  H6  UNL     1      -4.429  11.159  10.426  1.00  0.00           H  
HETATM   63  H7  UNL     1      -6.168  10.959  10.992  1.00  0.00           H  
HETATM   64  H8  UNL     1      -6.880  10.902   8.590  1.00  0.00           H  
HETATM   65  H9  UNL     1      -5.164  10.967   8.084  1.00  0.00           H  
HETATM   66  H10 UNL     1      -4.750   8.765   9.212  1.00  0.00           H  
HETATM   67  H11 UNL     1      -6.464   8.727   9.736  1.00  0.00           H  
HETATM   68  H12 UNL     1      -5.386   8.913   6.863  1.00  0.00           H  
HETATM   69  H13 UNL     1      -7.142   8.847   7.292  1.00  0.00           H  
HETATM   70  H14 UNL     1      -6.839   6.653   8.288  1.00  0.00           H  
HETATM   71  H15 UNL     1      -5.097   6.616   7.895  1.00  0.00           H  
HETATM   72  H16 UNL     1      -6.389   5.392   6.204  1.00  0.00           H  
HETATM   73  H17 UNL     1      -7.500   6.792   6.007  1.00  0.00           H  
HETATM   74  H18 UNL     1      -5.840   6.594   4.172  1.00  0.00           H  
HETATM   75  H19 UNL     1      -5.668   8.150   5.016  1.00  0.00           H  
HETATM   76  H20 UNL     1      -3.737   7.012   6.355  1.00  0.00           H  
HETATM   77  H21 UNL     1      -3.464   7.159   4.550  1.00  0.00           H  
HETATM   78  H22 UNL     1      -4.441   4.576   5.925  1.00  0.00           H  
HETATM   79  H23 UNL     1      -4.131   4.899   4.158  1.00  0.00           H  
HETATM   80  H24 UNL     1      -1.800   5.464   4.706  1.00  0.00           H  
HETATM   81  H25 UNL     1      -2.070   5.023   6.439  1.00  0.00           H  
HETATM   82  H26 UNL     1      -2.792   2.800   5.914  1.00  0.00           H  
HETATM   83  H27 UNL     1      -2.529   3.044   4.162  1.00  0.00           H  
HETATM   84  H28 UNL     1      -0.557   3.088   6.443  1.00  0.00           H  
HETATM   85  H29 UNL     1      -0.066   3.646   4.761  1.00  0.00           H  
HETATM   86  H30 UNL     1      -1.049   0.807   5.564  1.00  0.00           H  
HETATM   87  H31 UNL     1       0.825   2.078   3.571  1.00  0.00           H  
HETATM   88  H32 UNL     1       0.636  -0.789   4.565  1.00  0.00           H  
HETATM   89  H33 UNL     1      -0.248  -0.951   2.035  1.00  0.00           H  
HETATM   90  H34 UNL     1       2.765  -0.127   3.386  1.00  0.00           H  
HETATM   91  H35 UNL     1       1.795   1.578   2.010  1.00  0.00           H  
HETATM   92  H36 UNL     1       1.180   0.355   0.843  1.00  0.00           H  
HETATM   93  H37 UNL     1       3.918   1.348  -2.763  1.00  0.00           H  
HETATM   94  H38 UNL     1       3.810  -0.308  -2.047  1.00  0.00           H  
HETATM   95  H39 UNL     1       6.418   1.021  -3.084  1.00  0.00           H  
HETATM   96  H40 UNL     1       6.287  -0.567  -2.318  1.00  0.00           H  
HETATM   97  H41 UNL     1       5.965  -0.270  -6.235  1.00  0.00           H  
HETATM   98  H42 UNL     1       6.936   0.788  -5.176  1.00  0.00           H  
HETATM   99  H43 UNL     1       5.177   1.189  -5.597  1.00  0.00           H  
HETATM  100  H44 UNL     1       3.981  -1.211  -5.446  1.00  0.00           H  
HETATM  101  H45 UNL     1       3.456   0.206  -4.444  1.00  0.00           H  
HETATM  102  H46 UNL     1       3.734  -1.463  -3.705  1.00  0.00           H  
HETATM  103  H47 UNL     1       5.528  -2.569  -4.275  1.00  0.00           H  
HETATM  104  H48 UNL     1       6.910  -1.836  -3.462  1.00  0.00           H  
HETATM  105  H49 UNL     1       6.864  -1.749  -5.227  1.00  0.00           H  
HETATM  106  H50 UNL     1       1.385  -2.457   3.078  1.00  0.00           H  
HETATM  107  H51 UNL     1       3.514  -4.345   2.088  1.00  0.00           H  
HETATM  108  H52 UNL     1       1.766  -4.351   1.652  1.00  0.00           H  
HETATM  109  H53 UNL     1       2.433  -3.758  -0.725  1.00  0.00           H  
HETATM  110  H54 UNL     1       4.124  -3.844  -0.208  1.00  0.00           H  
HETATM  111  H55 UNL     1       2.373  -6.379   0.137  1.00  0.00           H  
HETATM  112  H56 UNL     1       4.117  -6.167   0.264  1.00  0.00           H  
HETATM  113  H57 UNL     1       3.605  -7.233  -1.753  1.00  0.00           H  
HETATM  114  H58 UNL     1       4.327  -5.619  -2.098  1.00  0.00           H  
HETATM  115  H59 UNL     1       2.406  -5.898  -3.628  1.00  0.00           H  
HETATM  116  H60 UNL     1       2.115  -4.646  -2.431  1.00  0.00           H  
HETATM  117  H61 UNL     1       0.193  -6.072  -2.811  1.00  0.00           H  
HETATM  118  H62 UNL     1       0.783  -6.134  -1.076  1.00  0.00           H  
HETATM  119  H63 UNL     1       1.946  -8.427  -1.913  1.00  0.00           H  
HETATM  120  H64 UNL     1      -0.161  -8.584  -0.589  1.00  0.00           H  
HETATM  121  H65 UNL     1      -2.036  -8.845  -2.390  1.00  0.00           H  
HETATM  122  H66 UNL     1       0.687 -10.593  -1.454  1.00  0.00           H  
HETATM  123  H67 UNL     1      -0.853 -10.563  -2.461  1.00  0.00           H  
HETATM  124  H68 UNL     1      -0.301  -8.177  -3.876  1.00  0.00           H  
HETATM  125  H69 UNL     1       2.691  -7.948  -4.861  1.00  0.00           H  
HETATM  126  H70 UNL     1      -0.097  -7.075  -5.670  1.00  0.00           H  
HETATM  127  H71 UNL     1       2.178  -5.625  -6.659  1.00  0.00           H  
HETATM  128  H72 UNL     1       2.059  -8.155  -7.989  1.00  0.00           H  
HETATM  129  H73 UNL     1      -0.212  -5.554  -7.489  1.00  0.00           H  
HETATM  130  H74 UNL     1      -0.010  -7.149  -8.216  1.00  0.00           H  
HETATM  131  H75 UNL     1       1.660  -6.390  -9.748  1.00  0.00           H  
HETATM  132  H76 UNL     1       0.212  -5.396  -9.870  1.00  0.00           H  
HETATM  133  H77 UNL     1       2.815  -4.633  -8.395  1.00  0.00           H  
HETATM  134  H78 UNL     1       1.293  -3.571  -8.450  1.00  0.00           H  
HETATM  135  H79 UNL     1       1.472  -3.567 -10.912  1.00  0.00           H  
HETATM  136  H80 UNL     1       2.917  -2.844 -10.139  1.00  0.00           H  
HETATM  137  H81 UNL     1       2.712  -5.202 -11.896  1.00  0.00           H  
HETATM  138  H82 UNL     1       3.477  -5.670 -10.336  1.00  0.00           H  
HETATM  139  H83 UNL     1       4.208  -4.401 -11.341  1.00  0.00           H  
CONECT    1    2   57   58   59
CONECT    2    3   60   61
CONECT    3    4   62   63
CONECT    4    5   64   65
CONECT    5    6   66   67
CONECT    6    7   68   69
CONECT    7    8   70   71
CONECT    8    9   72   73
CONECT    9   10   74   75
CONECT   10   11   76   77
CONECT   11   12   78   79
CONECT   12   13   80   81
CONECT   13   14   82   83
CONECT   14   15   84   85
CONECT   15   16   16   86
CONECT   16   17   87
CONECT   17   18   19   88
CONECT   18   89
CONECT   19   20   32   90
CONECT   20   21   91   92
CONECT   21   22
CONECT   22   23   23   24   25
CONECT   25   26
CONECT   26   27   93   94
CONECT   27   28   95   96
CONECT   28   29   30   31
CONECT   29   97   98   99
CONECT   30  100  101  102
CONECT   31  103  104  105
CONECT   32   33  106
CONECT   33   34   34   35
CONECT   35   36  107  108
CONECT   36   37  109  110
CONECT   37   38  111  112
CONECT   38   39  113  114
CONECT   39   40  115  116
CONECT   40   41  117  118
CONECT   41   42   47  119
CONECT   42   43   44  120
CONECT   43  121
CONECT   44   45  122  123
CONECT   45   46   46   47
CONECT   47   48  124
CONECT   48   49   49  125
CONECT   49   50  126
CONECT   50   51   52  127
CONECT   51  128
CONECT   52   53  129  130
CONECT   53   54  131  132
CONECT   54   55  133  134
CONECT   55   56  135  136
CONECT   56  137  138  139
END

HMDB0290707
     RDKit          3D
SM(d19:1/PGD1)
139139  0  0  0  0  0  0  0  0999 V2000
   -5.3933   13.5752   11.0807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6961   12.7593    9.8548 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5207   11.2673   10.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8582   10.5603    8.8654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7634    9.0564    8.9414 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1254    8.5040    7.5863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0629    7.0017    7.5803 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4559    6.4871    6.1873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5097    7.0655    5.1488 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0859    6.6714    5.3423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8751    5.1785    5.1938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4108    4.8302    5.3921 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  24  -1  28   1
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₄₄H₈₃N₂O₉P

Average Molecular Weight

815.127

Monoisotopic Molecular Weight

814.583619259

IUPAC Name

(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}nonadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2S,3R,4E)-3-hydroxy-2-{7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanamido}nonadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCC\C=C\[C@@H](O)[C@H](COP([O-])(=O)OCC[N+](C)(C)C)NC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C44H83N2O9P/c1-6-8-10-11-12-13-14-15-16-17-18-19-20-25-29-41(48)40(36-55-56(52,53)54-34-33-46(3,4)5)45-44(51)30-26-22-21-24-28-38-39(43(50)35-42(38)49)32-31-37(47)27-23-9-7-2/h25,29,31-32,37-42,47-49H,6-24,26-28,30,33-36H2,1-5H3,(H-,45,51,52,53)/b29-25+,32-31+/t37-,38+,39+,40-,41+,42-/m0/s1

InChI Key

LCSSNMGGVXEQGG-QNBQUTEKSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Physiological effect

Health effect

Pick's disease (PMID: 32310589)
Diabetes mellitus type 2 (PMID: 30310470)
Diabetes mellitus type 1 (PMID: 30310470)
Insulin resistance (PMID: 21844222)
Atherosclerosis (PMID: 17963772)

Circulatory system disorder

Cardiac disorder

Cardiovascular disease (PMID: 30310470)

Disposition

Biological location

Cellular substructure

Organelle

endoplasmic reticulum (PMID: 9009829)

cell membrane (PMID: 9009829)
golgi apparatus membrane (PMID: 11062253)

Cell

All cells and tissues (HMDB: HMDB0290707)

Process

Naturally occurring process

Biological process

Cellular process

Signal transduction (PMID: 8086039)

Role

Biological role

Nutrient

Nutrient (PMID: 23684760)

Industrial application

Pharmaceutical industry

Biomarker

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	3.71	ALOGPS
logP	4.75	ChemAxon
logS	-7	ALOGPS
pKa (Strongest Acidic)	1.87	ChemAxon
pKa (Strongest Basic)	-0.94	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	165.45 Å²	ChemAxon
Rotatable Bond Count	36	ChemAxon
Refractivity	239.78 m³·mol⁻¹	ChemAxon
Polarizability	98.49 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	295.031	32859911
AllCCS	[M+H-H2O]+	295.04	32859911
AllCCS	[M+Na]+	294.976	32859911
AllCCS	[M+NH4]+	294.993	32859911
AllCCS	[M-H]-	289.87	32859911
AllCCS	[M+Na-2H]-	294.018	32859911
AllCCS	[M+HCOO]-	298.599	32859911
DeepCCS	[M+H]+	277.333	30932474
DeepCCS	[M-H]-	275.61	30932474
DeepCCS	[M-2H]-	309.721	30932474
DeepCCS	[M+Na]+	283.737	30932474

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 10V, Positive-QTOF	splash10-0159-0600000090-90ae7b6f691236843b0b	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 20V, Positive-QTOF	splash10-0159-0600000090-90ae7b6f691236843b0b	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 40V, Positive-QTOF	splash10-001i-0900000110-baef3d7f564f3ed3bc58	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 10V, Positive-QTOF	splash10-00di-0000001190-9a479ddc401a864713bd	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 20V, Positive-QTOF	splash10-00e0-0000009290-b01d3d3a54d21518e357	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 40V, Positive-QTOF	splash10-000i-0000009110-f0b2d21edde8066cbb90	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 10V, Positive-QTOF	splash10-000i-0000001190-3a34f8b8a559d1ec39e4	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 20V, Positive-QTOF	splash10-0ue0-0000009290-f0f7942784a5898657be	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - SM(d19:1/PGD1) 40V, Positive-QTOF	splash10-0udi-0000009110-5151db7d1307a2318fa4	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for SM(d19:1/PGD1) (HMDB0290707)

MOL for HMDB0290707 (SM(d19:1/PGD1))

3D MOL for HMDB0290707 (SM(d19:1/PGD1))

3D SDF for HMDB0290707 (SM(d19:1/PGD1))

3D-SDF for HMDB0290707 (SM(d19:1/PGD1))

PDB for HMDB0290707 (SM(d19:1/PGD1))

3D PDB for HMDB0290707 (SM(d19:1/PGD1))

SMILES for HMDB0290707 (SM(d19:1/PGD1))

INCHI for HMDB0290707 (SM(d19:1/PGD1))

Structure for HMDB0290707 (SM(d19:1/PGD1))

3D Structure for HMDB0290707 (SM(d19:1/PGD1))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

MS/MS Spectra