Showing metabocard for CDP-DG(i-12:0/PGE2) (HMDB0293283)
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Version | 5.0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Status | Predicted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Creation Date | 2021-09-17 13:26:25 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Update Date | 2022-11-30 20:08:31 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
HMDB ID | HMDB0293283 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Secondary Accession Numbers | None | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Metabolite Identification | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Common Name | CDP-DG(i-12:0/PGE2) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description | CDP-DG(i-12:0/PGE2) is an oxidized CDP-diacylglycerol (CDP-DG). Oxidized CDP-diacylglycerols are glycerophospholipids in which a cytidine diphosphate moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized CDP-diacylglycerols belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, CDP-diacylglycerols can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. CDP-DG(i-12:0/PGE2), in particular, consists of one chain of one 10-methylundecanoyl at the C-1 position and one chain of Prostaglandin E2 at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized CDP-DGs can be synthesized via three different routes. In one route, the oxidized CDP-DG is synthetized de novo following the same mechanisms as for CDP-DGs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the CDP-DG backbone, mainly through the action of LOX (PMID: 33329396 ). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Structure | MOL for HMDB0293283 (CDP-DG(i-12:0/PGE2))Mrv1652309172115262D 67 69 0 0 1 0 999 V2000 -2.9779 -2.5810 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.4011 -1.9519 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.7249 -1.1931 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.2297 -0.5333 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9821 -0.1060 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.4107 -0.6322 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 -1.0869 -1.3910 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5821 -2.0508 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9155 0.0276 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 -1.4792 0.6711 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.6231 1.5274 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.8378 1.7324 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0912 2.7109 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.7482 3.4848 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 -1.6370 3.7230 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.1679 4.3397 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.0055 3.8933 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.8508 3.8494 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 1.0340 4.7437 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3879 4.6303 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1.6623 3.5685 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 2.3643 3.0854 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6886 2.2979 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 3.5089 2.8014 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.9030 3.7428 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 4.5708 4.3184 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6668 5.1831 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 5.3278 3.9582 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.0613 4.3451 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.6128 3.7109 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.2641 4.2328 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9210 3.7076 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.5850 4.2227 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 9.3504 3.8834 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.1105 4.2471 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.7972 3.7428 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 11.5062 4.1946 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.8638 2.8976 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2557 1.6650 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 3.7584 0.9815 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6431 0.9425 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 4.0967 0.2009 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6398 -0.5124 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9360 -1.0010 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1024 -1.2163 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2524 -1.1666 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.4081 -1.0114 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1328 -0.3373 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 0.5660 0.1424 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.3480 -0.1757 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1.2377 0.6478 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2830 1.4887 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 2.0842 1.1690 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.6142 1.9525 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 1.2263 2.5089 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7874 3.0887 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.3327 3.8625 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 3.1690 3.4094 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 2.5152 4.8074 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.5643 5.7060 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1901 6.5214 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.5453 7.2844 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0717 7.9599 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0632 2.1761 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.8583 2.7568 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.1612 2.2970 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.1960 3.1399 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 2 0 0 0 0 3 4 1 0 0 0 0 4 5 2 0 0 0 0 4 6 1 0 0 0 0 6 7 1 0 0 0 0 7 8 2 0 0 0 0 2 8 1 0 0 0 0 9 6 1 6 0 0 0 9 10 1 0 0 0 0 11 10 1 1 0 0 0 11 12 1 0 0 0 0 12 13 1 0 0 0 0 13 14 1 0 0 0 0 14 15 1 0 0 0 0 14 16 2 0 0 0 0 14 17 1 0 0 0 0 17 18 1 0 0 0 0 18 19 1 0 0 0 0 18 20 2 0 0 0 0 18 21 1 0 0 0 0 21 22 1 0 0 0 0 22 23 1 0 0 0 0 23 24 1 6 0 0 0 24 25 1 0 0 0 0 25 26 1 0 0 0 0 26 27 2 0 0 0 0 26 28 1 0 0 0 0 28 29 1 0 0 0 0 29 30 1 0 0 0 0 30 31 1 0 0 0 0 31 32 1 0 0 0 0 32 33 1 0 0 0 0 33 34 1 0 0 0 0 34 35 1 0 0 0 0 35 36 1 0 0 0 0 36 37 1 0 0 0 0 36 38 1 0 0 0 0 23 39 1 0 0 0 0 39 40 1 0 0 0 0 40 41 2 0 0 0 0 40 42 1 0 0 0 0 42 43 1 0 0 0 0 43 44 1 0 0 0 0 44 45 1 0 0 0 0 45 46 2 0 0 0 0 46 47 1 0 0 0 0 47 48 1 0 0 0 0 9 48 1 0 0 0 0 48 49 1 6 0 0 0 49 50 2 0 0 0 0 49 51 1 0 0 0 0 51 52 1 0 0 0 0 52 53 1 6 0 0 0 52 54 1 0 0 0 0 54 55 1 1 0 0 0 55 56 2 0 0 0 0 56 57 1 0 0 0 0 57 58 1 6 0 0 0 57 59 1 0 0 0 0 59 60 1 0 0 0 0 60 61 1 0 0 0 0 61 62 1 0 0 0 0 62 63 1 0 0 0 0 11 64 1 0 0 0 0 64 65 1 1 0 0 0 64 66 1 0 0 0 0 54 66 1 0 0 0 0 66 67 1 1 0 0 0 M END 3D MOL for HMDB0293283 (CDP-DG(i-12:0/PGE2))HMDB0293283 RDKit 3D CDP-DG(i-12:0/PGE2) 140142 0 0 0 0 0 0 0 0999 V2000 -12.1319 5.1876 0.1505 C 0 0 0 0 0 0 0 0 0 0 0 0 -11.7007 4.1381 1.1647 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.2151 3.9319 1.0547 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.8326 3.4673 -0.3231 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.4983 2.1483 -0.6797 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.0374 1.7662 -2.0826 C 0 0 2 0 0 0 0 0 0 0 0 0 -10.5892 0.5791 -2.4806 O 0 0 0 0 0 0 0 0 0 0 0 0 -8.5234 1.6619 -2.0796 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.9388 0.5066 -1.9009 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.4841 0.2109 -1.8656 C 0 0 2 0 0 0 0 0 0 0 0 0 -5.6754 1.4697 -1.8804 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.5598 1.3632 -2.7671 O 0 0 0 0 0 0 0 0 0 0 0 0 -5.0051 1.7610 -0.5255 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.4892 3.0469 -0.6192 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.8370 0.7830 -0.3036 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.8536 1.3140 0.7184 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9905 2.6734 0.9640 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.4038 3.2764 1.1489 P 0 0 0 0 0 5 0 0 0 0 0 0 -1.0206 3.1252 2.6248 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.3147 4.8974 0.6667 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.3340 2.3968 0.1795 O 0 0 0 0 0 0 0 0 0 0 0 0 0.9881 1.8164 1.0670 P 0 0 0 0 0 5 0 0 0 0 0 0 1.5462 3.0217 1.8260 O 0 0 0 0 0 0 0 0 0 0 0 0 0.5337 0.6121 2.1656 O 0 0 0 0 0 0 0 0 0 0 0 0 2.1540 1.1928 0.0214 O 0 0 0 0 0 0 0 0 0 0 0 0 2.0217 -0.1862 -0.1811 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3594 -0.8933 -0.2366 C 0 0 1 0 0 0 0 0 0 0 0 0 4.3912 0.1228 0.2012 C 0 0 0 0 0 0 0 0 0 0 0 0 5.7007 -0.4214 0.1242 O 0 0 0 0 0 0 0 0 0 0 0 0 6.7642 0.3521 0.4837 C 0 0 0 0 0 0 0 0 0 0 0 0 6.6243 1.5160 0.8769 O 0 0 0 0 0 0 0 0 0 0 0 0 8.1914 -0.1810 0.4190 C 0 0 0 0 0 0 0 0 0 0 0 0 8.2012 -1.5760 -0.0574 C 0 0 0 0 0 0 0 0 0 0 0 0 9.4612 -2.3175 -0.0959 C 0 0 0 0 0 0 0 0 0 0 0 0 10.5908 -1.8428 -0.8956 C 0 0 0 0 0 0 0 0 0 0 0 0 11.2610 -0.5718 -0.4948 C 0 0 0 0 0 0 0 0 0 0 0 0 12.4190 -0.3048 -1.4721 C 0 0 0 0 0 0 0 0 0 0 0 0 13.0838 0.9780 -1.1181 C 0 0 0 0 0 0 0 0 0 0 0 0 13.6375 0.9381 0.2758 C 0 0 0 0 0 0 0 0 0 0 0 0 14.3347 2.2621 0.6145 C 0 0 0 0 0 0 0 0 0 0 0 0 13.3244 3.4095 0.5112 C 0 0 0 0 0 0 0 0 0 0 0 0 15.5164 2.5118 -0.2702 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4395 -1.9947 0.5981 O 0 0 0 0 0 0 0 0 0 0 0 0 3.0029 -3.2675 0.4422 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6638 -4.2567 0.8384 O 0 0 0 0 0 0 0 0 0 0 0 0 1.7022 -3.5346 -0.2155 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6705 -3.7232 0.8622 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4288 -4.6694 0.5475 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0291 -4.5540 -0.7899 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3314 -4.6035 -1.0433 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3762 -3.8555 -0.2727 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5418 -2.4465 -0.7981 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.7313 -2.4272 -1.7179 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.6112 -3.2301 -1.4917 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.8883 -1.5104 -2.8585 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.1522 -0.7544 -2.9573 C 0 0 1 0 0 0 0 0 0 0 0 0 -7.2075 -1.6911 -3.0650 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.6352 -1.4884 0.3011 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.1102 -2.0919 1.5299 N 0 0 0 0 0 0 0 0 0 0 0 0 -5.4038 -2.3987 1.6825 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.8888 -2.9507 2.8392 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.9806 -3.1824 3.8567 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4431 -3.7597 5.0880 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.6879 -2.8619 3.6712 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.2395 -2.3248 2.5345 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9978 -2.0288 2.3890 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.3720 -0.3618 0.1239 O 0 0 0 0 0 0 0 0 0 0 0 0 -12.9888 5.7472 0.5640 H 0 0 0 0 0 0 0 0 0 0 0 0 -12.3810 4.6979 -0.8099 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.3095 5.8962 -0.0420 H 0 0 0 0 0 0 0 0 0 0 0 0 -12.2395 3.2017 0.9637 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.9664 4.5107 2.1795 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.6384 4.8300 1.2982 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.9504 3.1310 1.7839 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.7381 3.3987 -0.3940 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.1503 4.2422 -1.0419 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.2707 1.3718 0.0663 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.5933 2.2762 -0.7302 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.3143 2.5899 -2.7424 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.9320 0.1080 -1.6619 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.9805 2.5683 -2.2305 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.6175 -0.3730 -1.7538 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3508 -0.2700 -0.8499 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1814 2.3919 -2.1412 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6673 1.9785 -3.5268 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.7461 1.7081 0.2696 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.8686 3.0474 -1.3917 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3010 0.7979 -1.2692 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0466 0.7818 1.6718 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.8059 1.0436 0.4460 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4453 5.2456 1.0084 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1556 0.0002 1.8231 H 0 0 0 0 0 0 0 0 0 0 0 0 1.3540 -0.5739 0.5848 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4676 -0.2903 -1.1643 H 0 0 0 0 0 0 0 0 0 0 0 0 3.5644 -1.1035 -1.3011 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2044 0.3449 1.2710 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3347 1.0591 -0.3992 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6284 0.4949 -0.3751 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6668 -0.0773 1.3946 H 0 0 0 0 0 0 0 0 0 0 0 0 7.3982 -2.1805 0.5073 H 0 0 0 0 0 0 0 0 0 0 0 0 7.7290 -1.5506 -1.1093 H 0 0 0 0 0 0 0 0 0 0 0 0 9.8250 -2.4331 0.9916 H 0 0 0 0 0 0 0 0 0 0 0 0 9.2591 -3.4318 -0.3435 H 0 0 0 0 0 0 0 0 0 0 0 0 10.2891 -1.7909 -1.9992 H 0 0 0 0 0 0 0 0 0 0 0 0 11.3744 -2.6692 -0.8855 H 0 0 0 0 0 0 0 0 0 0 0 0 11.7505 -0.7237 0.5263 H 0 0 0 0 0 0 0 0 0 0 0 0 10.7000 0.3263 -0.4166 H 0 0 0 0 0 0 0 0 0 0 0 0 11.9899 -0.3111 -2.4832 H 0 0 0 0 0 0 0 0 0 0 0 0 13.1170 -1.1644 -1.3580 H 0 0 0 0 0 0 0 0 0 0 0 0 13.8658 1.2184 -1.8744 H 0 0 0 0 0 0 0 0 0 0 0 0 12.3226 1.8046 -1.2215 H 0 0 0 0 0 0 0 0 0 0 0 0 14.3808 0.1317 0.4041 H 0 0 0 0 0 0 0 0 0 0 0 0 12.7899 0.8740 1.0141 H 0 0 0 0 0 0 0 0 0 0 0 0 14.6398 2.1945 1.6640 H 0 0 0 0 0 0 0 0 0 0 0 0 13.7518 4.2544 1.0918 H 0 0 0 0 0 0 0 0 0 0 0 0 13.1559 3.6822 -0.5529 H 0 0 0 0 0 0 0 0 0 0 0 0 12.3893 3.0511 0.9733 H 0 0 0 0 0 0 0 0 0 0 0 0 15.2612 3.3530 -0.9684 H 0 0 0 0 0 0 0 0 0 0 0 0 15.8861 1.6229 -0.7814 H 0 0 0 0 0 0 0 0 0 0 0 0 16.3551 2.9129 0.3705 H 0 0 0 0 0 0 0 0 0 0 0 0 1.7111 -4.4413 -0.8387 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4772 -2.6774 -0.8813 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2195 -4.1645 1.7502 H 0 0 0 0 0 0 0 0 0 0 0 0 0.3546 -2.7237 1.2223 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2387 -4.5039 1.2906 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1131 -5.7399 0.7366 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3012 -4.4180 -1.6172 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6629 -5.2203 -1.8657 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.1324 -3.9373 0.7818 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.3393 -4.4386 -0.3970 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6047 -2.3015 -1.4269 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6953 -2.0714 -3.8434 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0197 -0.8211 -2.8207 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.2155 -0.1932 -3.9357 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.4398 -1.9633 -2.1450 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5676 -1.1179 0.4926 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1353 -2.2080 0.8951 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9332 -3.2072 2.9818 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.9806 -3.5887 6.0073 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.2864 -4.3846 5.0704 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 1 0 6 8 1 0 8 9 2 3 9 10 1 0 10 11 1 0 11 12 1 0 11 13 1 0 13 14 1 0 13 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 2 0 18 20 1 0 18 21 1 0 21 22 1 0 22 23 2 0 22 24 1 0 22 25 1 0 25 26 1 0 26 27 1 0 27 28 1 0 28 29 1 0 29 30 1 0 30 31 2 0 30 32 1 0 32 33 1 0 33 34 1 0 34 35 1 0 35 36 1 0 36 37 1 0 37 38 1 0 38 39 1 0 39 40 1 0 40 41 1 0 40 42 1 0 27 43 1 0 43 44 1 0 44 45 2 0 44 46 1 0 46 47 1 0 47 48 1 0 48 49 1 0 49 50 2 0 50 51 1 0 51 52 1 0 52 53 1 0 53 54 2 0 53 55 1 0 55 56 1 0 56 57 1 0 52 58 1 0 58 59 1 0 59 60 1 0 60 61 2 0 61 62 1 0 62 63 1 0 62 64 2 0 64 65 1 0 65 66 2 0 58 67 1 0 56 10 1 0 65 59 1 0 67 15 1 0 1 68 1 0 1 69 1 0 1 70 1 0 2 71 1 0 2 72 1 0 3 73 1 0 3 74 1 0 4 75 1 0 4 76 1 0 5 77 1 0 5 78 1 0 6 79 1 6 7 80 1 0 8 81 1 0 9 82 1 0 10 83 1 1 11 84 1 6 12 85 1 0 13 86 1 1 14 87 1 0 15 88 1 6 16 89 1 0 16 90 1 0 20 91 1 0 24 92 1 0 26 93 1 0 26 94 1 0 27 95 1 6 28 96 1 0 28 97 1 0 32 98 1 0 32 99 1 0 33100 1 0 33101 1 0 34102 1 0 34103 1 0 35104 1 0 35105 1 0 36106 1 0 36107 1 0 37108 1 0 37109 1 0 38110 1 0 38111 1 0 39112 1 0 39113 1 0 40114 1 0 41115 1 0 41116 1 0 41117 1 0 42118 1 0 42119 1 0 42120 1 0 46121 1 0 46122 1 0 47123 1 0 47124 1 0 48125 1 0 48126 1 0 49127 1 0 50128 1 0 51129 1 0 51130 1 0 52131 1 6 55132 1 0 55133 1 0 56134 1 6 57135 1 0 58136 1 1 60137 1 0 61138 1 0 63139 1 0 63140 1 0 M END 3D SDF for HMDB0293283 (CDP-DG(i-12:0/PGE2))Mrv1652309172115262D 67 69 0 0 1 0 999 V2000 -2.9779 -2.5810 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.4011 -1.9519 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.7249 -1.1931 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.2297 -0.5333 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9821 -0.1060 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.4107 -0.6322 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 -1.0869 -1.3910 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5821 -2.0508 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9155 0.0276 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 -1.4792 0.6711 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.6231 1.5274 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.8378 1.7324 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0912 2.7109 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.7482 3.4848 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 -1.6370 3.7230 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.1679 4.3397 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.0055 3.8933 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.8508 3.8494 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 1.0340 4.7437 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3879 4.6303 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1.6623 3.5685 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 2.3643 3.0854 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6886 2.2979 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 3.5089 2.8014 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.9030 3.7428 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 4.5708 4.3184 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6668 5.1831 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 5.3278 3.9582 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.0613 4.3451 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.6128 3.7109 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.2641 4.2328 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9210 3.7076 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.5850 4.2227 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 9.3504 3.8834 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.1105 4.2471 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.7972 3.7428 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 11.5062 4.1946 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.8638 2.8976 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2557 1.6650 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 3.7584 0.9815 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6431 0.9425 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 4.0967 0.2009 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6398 -0.5124 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9360 -1.0010 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1024 -1.2163 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2524 -1.1666 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.4081 -1.0114 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1328 -0.3373 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 0.5660 0.1424 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.3480 -0.1757 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1.2377 0.6478 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2830 1.4887 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 2.0842 1.1690 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.6142 1.9525 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 1.2263 2.5089 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7874 3.0887 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.3327 3.8625 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 3.1690 3.4094 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 2.5152 4.8074 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.5643 5.7060 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1901 6.5214 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.5453 7.2844 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0717 7.9599 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0632 2.1761 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.8583 2.7568 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.1612 2.2970 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.1960 3.1399 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 2 0 0 0 0 3 4 1 0 0 0 0 4 5 2 0 0 0 0 4 6 1 0 0 0 0 6 7 1 0 0 0 0 7 8 2 0 0 0 0 2 8 1 0 0 0 0 9 6 1 6 0 0 0 9 10 1 0 0 0 0 11 10 1 1 0 0 0 11 12 1 0 0 0 0 12 13 1 0 0 0 0 13 14 1 0 0 0 0 14 15 1 0 0 0 0 14 16 2 0 0 0 0 14 17 1 0 0 0 0 17 18 1 0 0 0 0 18 19 1 0 0 0 0 18 20 2 0 0 0 0 18 21 1 0 0 0 0 21 22 1 0 0 0 0 22 23 1 0 0 0 0 23 24 1 6 0 0 0 24 25 1 0 0 0 0 25 26 1 0 0 0 0 26 27 2 0 0 0 0 26 28 1 0 0 0 0 28 29 1 0 0 0 0 29 30 1 0 0 0 0 30 31 1 0 0 0 0 31 32 1 0 0 0 0 32 33 1 0 0 0 0 33 34 1 0 0 0 0 34 35 1 0 0 0 0 35 36 1 0 0 0 0 36 37 1 0 0 0 0 36 38 1 0 0 0 0 23 39 1 0 0 0 0 39 40 1 0 0 0 0 40 41 2 0 0 0 0 40 42 1 0 0 0 0 42 43 1 0 0 0 0 43 44 1 0 0 0 0 44 45 1 0 0 0 0 45 46 2 0 0 0 0 46 47 1 0 0 0 0 47 48 1 0 0 0 0 9 48 1 0 0 0 0 48 49 1 6 0 0 0 49 50 2 0 0 0 0 49 51 1 0 0 0 0 51 52 1 0 0 0 0 52 53 1 6 0 0 0 52 54 1 0 0 0 0 54 55 1 1 0 0 0 55 56 2 0 0 0 0 56 57 1 0 0 0 0 57 58 1 6 0 0 0 57 59 1 0 0 0 0 59 60 1 0 0 0 0 60 61 1 0 0 0 0 61 62 1 0 0 0 0 62 63 1 0 0 0 0 11 64 1 0 0 0 0 64 65 1 1 0 0 0 64 66 1 0 0 0 0 54 66 1 0 0 0 0 66 67 1 1 0 0 0 M END > <DATABASE_ID> HMDB0293283 > <DATABASE_NAME> hmdb > <SMILES> CCCCC[C@H](O)C=C[C@H]1[C@H](O)CC(=O)[C@@H]2CC=CCCCC(=O)O[C@H](COC(=O)CCCCCCCCC(C)C)COP(O)(=O)OP(O)(=O)OC[C@@H](O[C@H]2N2C=CC(N)=NC2=O)[C@@H](O)[C@H]1O > <INCHI_IDENTIFIER> InChI=1S/C44H73N3O18P2/c1-4-5-12-18-31(48)22-23-33-35(49)26-36(50)34-19-14-10-11-16-21-40(52)63-32(27-60-39(51)20-15-9-7-6-8-13-17-30(2)3)28-61-66(56,57)65-67(58,59)62-29-37(42(54)41(33)53)64-43(34)47-25-24-38(45)46-44(47)55/h10,14,22-25,30-35,37,41-43,48-49,53-54H,4-9,11-13,15-21,26-29H2,1-3H3,(H,56,57)(H,58,59)(H2,45,46,55)/b14-10-,23-22-/t31-,32+,33-,34-,35+,37+,41-,42+,43+/m0/s1 > <INCHI_KEY> XTRSTNPETPLIIK-ZKCWWABJSA-N > <FORMULA> C44H73N3O18P2 > <MOLECULAR_WEIGHT> 994.019 > <EXACT_MASS> 993.436436519 > <JCHEM_ACCEPTOR_COUNT> 15 > <JCHEM_ATOM_COUNT> 140 > <JCHEM_AVERAGE_POLARIZABILITY> 103.43847027450308 > <JCHEM_BIOAVAILABILITY> 0 > <JCHEM_DONOR_COUNT> 7 > <JCHEM_FORMAL_CHARGE> 0 > <JCHEM_GHOSE_FILTER> 0 > <JCHEM_IUPAC> [(1R,9R,15Z,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacos-15-en-9-yl]methyl 10-methylundecanoate > <ALOGPS_LOGP> 2.21 > <JCHEM_LOGP> 4.338727149119979 > <ALOGPS_LOGS> -3.31 > <JCHEM_MDDR_LIKE_RULE> 1 > <JCHEM_NUMBER_OF_RINGS> 3 > <JCHEM_PHYSIOLOGICAL_CHARGE> -2 > <JCHEM_PKA> 3.2718999239461373 > <JCHEM_PKA_STRONGEST_ACIDIC> 1.8697147678387385 > <JCHEM_PKA_STRONGEST_BASIC> 0.3038794608558414 > <JCHEM_POLAR_SURFACE_AREA> 320.8 > <JCHEM_REFRACTIVITY> 244.16080000000008 > <JCHEM_ROTATABLE_BOND_COUNT> 19 > <JCHEM_RULE_OF_FIVE> 0 > <ALOGPS_SOLUBILITY> 4.85e-01 g/l > <JCHEM_TRADITIONAL_IUPAC> [(1R,9R,15Z,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxopyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacos-15-en-9-yl]methyl 10-methylundecanoate > <JCHEM_VEBER_RULE> 0 $$$$ 3D-SDF for HMDB0293283 (CDP-DG(i-12:0/PGE2))HMDB0293283 RDKit 3D CDP-DG(i-12:0/PGE2) 140142 0 0 0 0 0 0 0 0999 V2000 -12.1319 5.1876 0.1505 C 0 0 0 0 0 0 0 0 0 0 0 0 -11.7007 4.1381 1.1647 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.2151 3.9319 1.0547 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.8326 3.4673 -0.3231 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.4983 2.1483 -0.6797 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.0374 1.7662 -2.0826 C 0 0 2 0 0 0 0 0 0 0 0 0 -10.5892 0.5791 -2.4806 O 0 0 0 0 0 0 0 0 0 0 0 0 -8.5234 1.6619 -2.0796 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.9388 0.5066 -1.9009 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.4841 0.2109 -1.8656 C 0 0 2 0 0 0 0 0 0 0 0 0 -5.6754 1.4697 -1.8804 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.5598 1.3632 -2.7671 O 0 0 0 0 0 0 0 0 0 0 0 0 -5.0051 1.7610 -0.5255 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.4892 3.0469 -0.6192 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.8370 0.7830 -0.3036 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.8536 1.3140 0.7184 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9905 2.6734 0.9640 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.4038 3.2764 1.1489 P 0 0 0 0 0 5 0 0 0 0 0 0 -1.0206 3.1252 2.6248 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.3147 4.8974 0.6667 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.3340 2.3968 0.1795 O 0 0 0 0 0 0 0 0 0 0 0 0 0.9881 1.8164 1.0670 P 0 0 0 0 0 5 0 0 0 0 0 0 1.5462 3.0217 1.8260 O 0 0 0 0 0 0 0 0 0 0 0 0 0.5337 0.6121 2.1656 O 0 0 0 0 0 0 0 0 0 0 0 0 2.1540 1.1928 0.0214 O 0 0 0 0 0 0 0 0 0 0 0 0 2.0217 -0.1862 -0.1811 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3594 -0.8933 -0.2366 C 0 0 1 0 0 0 0 0 0 0 0 0 4.3912 0.1228 0.2012 C 0 0 0 0 0 0 0 0 0 0 0 0 5.7007 -0.4214 0.1242 O 0 0 0 0 0 0 0 0 0 0 0 0 6.7642 0.3521 0.4837 C 0 0 0 0 0 0 0 0 0 0 0 0 6.6243 1.5160 0.8769 O 0 0 0 0 0 0 0 0 0 0 0 0 8.1914 -0.1810 0.4190 C 0 0 0 0 0 0 0 0 0 0 0 0 8.2012 -1.5760 -0.0574 C 0 0 0 0 0 0 0 0 0 0 0 0 9.4612 -2.3175 -0.0959 C 0 0 0 0 0 0 0 0 0 0 0 0 10.5908 -1.8428 -0.8956 C 0 0 0 0 0 0 0 0 0 0 0 0 11.2610 -0.5718 -0.4948 C 0 0 0 0 0 0 0 0 0 0 0 0 12.4190 -0.3048 -1.4721 C 0 0 0 0 0 0 0 0 0 0 0 0 13.0838 0.9780 -1.1181 C 0 0 0 0 0 0 0 0 0 0 0 0 13.6375 0.9381 0.2758 C 0 0 0 0 0 0 0 0 0 0 0 0 14.3347 2.2621 0.6145 C 0 0 0 0 0 0 0 0 0 0 0 0 13.3244 3.4095 0.5112 C 0 0 0 0 0 0 0 0 0 0 0 0 15.5164 2.5118 -0.2702 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4395 -1.9947 0.5981 O 0 0 0 0 0 0 0 0 0 0 0 0 3.0029 -3.2675 0.4422 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6638 -4.2567 0.8384 O 0 0 0 0 0 0 0 0 0 0 0 0 1.7022 -3.5346 -0.2155 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6705 -3.7232 0.8622 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4288 -4.6694 0.5475 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0291 -4.5540 -0.7899 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3314 -4.6035 -1.0433 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3762 -3.8555 -0.2727 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5418 -2.4465 -0.7981 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.7313 -2.4272 -1.7179 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.6112 -3.2301 -1.4917 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.8883 -1.5104 -2.8585 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.1522 -0.7544 -2.9573 C 0 0 1 0 0 0 0 0 0 0 0 0 -7.2075 -1.6911 -3.0650 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.6352 -1.4884 0.3011 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.1102 -2.0919 1.5299 N 0 0 0 0 0 0 0 0 0 0 0 0 -5.4038 -2.3987 1.6825 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.8888 -2.9507 2.8392 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.9806 -3.1824 3.8567 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4431 -3.7597 5.0880 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.6879 -2.8619 3.6712 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.2395 -2.3248 2.5345 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9978 -2.0288 2.3890 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.3720 -0.3618 0.1239 O 0 0 0 0 0 0 0 0 0 0 0 0 -12.9888 5.7472 0.5640 H 0 0 0 0 0 0 0 0 0 0 0 0 -12.3810 4.6979 -0.8099 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.3095 5.8962 -0.0420 H 0 0 0 0 0 0 0 0 0 0 0 0 -12.2395 3.2017 0.9637 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.9664 4.5107 2.1795 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.6384 4.8300 1.2982 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.9504 3.1310 1.7839 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.7381 3.3987 -0.3940 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.1503 4.2422 -1.0419 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.2707 1.3718 0.0663 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.5933 2.2762 -0.7302 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.3143 2.5899 -2.7424 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.9320 0.1080 -1.6619 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.9805 2.5683 -2.2305 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.6175 -0.3730 -1.7538 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3508 -0.2700 -0.8499 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1814 2.3919 -2.1412 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6673 1.9785 -3.5268 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.7461 1.7081 0.2696 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.8686 3.0474 -1.3917 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3010 0.7979 -1.2692 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0466 0.7818 1.6718 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.8059 1.0436 0.4460 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4453 5.2456 1.0084 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1556 0.0002 1.8231 H 0 0 0 0 0 0 0 0 0 0 0 0 1.3540 -0.5739 0.5848 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4676 -0.2903 -1.1643 H 0 0 0 0 0 0 0 0 0 0 0 0 3.5644 -1.1035 -1.3011 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2044 0.3449 1.2710 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3347 1.0591 -0.3992 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6284 0.4949 -0.3751 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6668 -0.0773 1.3946 H 0 0 0 0 0 0 0 0 0 0 0 0 7.3982 -2.1805 0.5073 H 0 0 0 0 0 0 0 0 0 0 0 0 7.7290 -1.5506 -1.1093 H 0 0 0 0 0 0 0 0 0 0 0 0 9.8250 -2.4331 0.9916 H 0 0 0 0 0 0 0 0 0 0 0 0 9.2591 -3.4318 -0.3435 H 0 0 0 0 0 0 0 0 0 0 0 0 10.2891 -1.7909 -1.9992 H 0 0 0 0 0 0 0 0 0 0 0 0 11.3744 -2.6692 -0.8855 H 0 0 0 0 0 0 0 0 0 0 0 0 11.7505 -0.7237 0.5263 H 0 0 0 0 0 0 0 0 0 0 0 0 10.7000 0.3263 -0.4166 H 0 0 0 0 0 0 0 0 0 0 0 0 11.9899 -0.3111 -2.4832 H 0 0 0 0 0 0 0 0 0 0 0 0 13.1170 -1.1644 -1.3580 H 0 0 0 0 0 0 0 0 0 0 0 0 13.8658 1.2184 -1.8744 H 0 0 0 0 0 0 0 0 0 0 0 0 12.3226 1.8046 -1.2215 H 0 0 0 0 0 0 0 0 0 0 0 0 14.3808 0.1317 0.4041 H 0 0 0 0 0 0 0 0 0 0 0 0 12.7899 0.8740 1.0141 H 0 0 0 0 0 0 0 0 0 0 0 0 14.6398 2.1945 1.6640 H 0 0 0 0 0 0 0 0 0 0 0 0 13.7518 4.2544 1.0918 H 0 0 0 0 0 0 0 0 0 0 0 0 13.1559 3.6822 -0.5529 H 0 0 0 0 0 0 0 0 0 0 0 0 12.3893 3.0511 0.9733 H 0 0 0 0 0 0 0 0 0 0 0 0 15.2612 3.3530 -0.9684 H 0 0 0 0 0 0 0 0 0 0 0 0 15.8861 1.6229 -0.7814 H 0 0 0 0 0 0 0 0 0 0 0 0 16.3551 2.9129 0.3705 H 0 0 0 0 0 0 0 0 0 0 0 0 1.7111 -4.4413 -0.8387 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4772 -2.6774 -0.8813 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2195 -4.1645 1.7502 H 0 0 0 0 0 0 0 0 0 0 0 0 0.3546 -2.7237 1.2223 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2387 -4.5039 1.2906 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1131 -5.7399 0.7366 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3012 -4.4180 -1.6172 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6629 -5.2203 -1.8657 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.1324 -3.9373 0.7818 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.3393 -4.4386 -0.3970 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6047 -2.3015 -1.4269 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6953 -2.0714 -3.8434 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0197 -0.8211 -2.8207 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.2155 -0.1932 -3.9357 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.4398 -1.9633 -2.1450 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5676 -1.1179 0.4926 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1353 -2.2080 0.8951 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9332 -3.2072 2.9818 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.9806 -3.5887 6.0073 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.2864 -4.3846 5.0704 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 1 0 6 8 1 0 8 9 2 3 9 10 1 0 10 11 1 0 11 12 1 0 11 13 1 0 13 14 1 0 13 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 2 0 18 20 1 0 18 21 1 0 21 22 1 0 22 23 2 0 22 24 1 0 22 25 1 0 25 26 1 0 26 27 1 0 27 28 1 0 28 29 1 0 29 30 1 0 30 31 2 0 30 32 1 0 32 33 1 0 33 34 1 0 34 35 1 0 35 36 1 0 36 37 1 0 37 38 1 0 38 39 1 0 39 40 1 0 40 41 1 0 40 42 1 0 27 43 1 0 43 44 1 0 44 45 2 0 44 46 1 0 46 47 1 0 47 48 1 0 48 49 1 0 49 50 2 0 50 51 1 0 51 52 1 0 52 53 1 0 53 54 2 0 53 55 1 0 55 56 1 0 56 57 1 0 52 58 1 0 58 59 1 0 59 60 1 0 60 61 2 0 61 62 1 0 62 63 1 0 62 64 2 0 64 65 1 0 65 66 2 0 58 67 1 0 56 10 1 0 65 59 1 0 67 15 1 0 1 68 1 0 1 69 1 0 1 70 1 0 2 71 1 0 2 72 1 0 3 73 1 0 3 74 1 0 4 75 1 0 4 76 1 0 5 77 1 0 5 78 1 0 6 79 1 6 7 80 1 0 8 81 1 0 9 82 1 0 10 83 1 1 11 84 1 6 12 85 1 0 13 86 1 1 14 87 1 0 15 88 1 6 16 89 1 0 16 90 1 0 20 91 1 0 24 92 1 0 26 93 1 0 26 94 1 0 27 95 1 6 28 96 1 0 28 97 1 0 32 98 1 0 32 99 1 0 33100 1 0 33101 1 0 34102 1 0 34103 1 0 35104 1 0 35105 1 0 36106 1 0 36107 1 0 37108 1 0 37109 1 0 38110 1 0 38111 1 0 39112 1 0 39113 1 0 40114 1 0 41115 1 0 41116 1 0 41117 1 0 42118 1 0 42119 1 0 42120 1 0 46121 1 0 46122 1 0 47123 1 0 47124 1 0 48125 1 0 48126 1 0 49127 1 0 50128 1 0 51129 1 0 51130 1 0 52131 1 6 55132 1 0 55133 1 0 56134 1 6 57135 1 0 58136 1 1 60137 1 0 61138 1 0 63139 1 0 63140 1 0 M END PDB for HMDB0293283 (CDP-DG(i-12:0/PGE2))HEADER PROTEIN 17-SEP-21 NONE TITLE NULL COMPND NULL SOURCE NULL KEYWDS NULL EXPDTA NULL AUTHOR Marvin REVDAT 1 17-SEP-21 0 HETATM 1 N UNK 0 -5.559 -4.818 0.000 0.00 0.00 N+0 HETATM 2 C UNK 0 -4.482 -3.644 0.000 0.00 0.00 C+0 HETATM 3 N UNK 0 -5.087 -2.227 0.000 0.00 0.00 N+0 HETATM 4 C UNK 0 -4.162 -0.995 0.000 0.00 0.00 C+0 HETATM 5 O UNK 0 -5.567 -0.198 0.000 0.00 0.00 O+0 HETATM 6 N UNK 0 -2.633 -1.180 0.000 0.00 0.00 N+0 HETATM 7 C UNK 0 -2.029 -2.597 0.000 0.00 0.00 C+0 HETATM 8 C UNK 0 -2.953 -3.828 0.000 0.00 0.00 C+0 HETATM 9 C UNK 0 -1.709 0.052 0.000 0.00 0.00 C+0 HETATM 10 O UNK 0 -2.761 1.253 0.000 0.00 0.00 O+0 HETATM 11 C UNK 0 -3.030 2.851 0.000 0.00 0.00 C+0 HETATM 12 C UNK 0 -1.564 3.234 0.000 0.00 0.00 C+0 HETATM 13 O UNK 0 -2.037 5.060 0.000 0.00 0.00 O+0 HETATM 14 P UNK 0 -1.397 6.505 0.000 0.00 0.00 P+0 HETATM 15 O UNK 0 -3.056 6.950 0.000 0.00 0.00 O+0 HETATM 16 O UNK 0 -2.180 8.101 0.000 0.00 0.00 O+0 HETATM 17 O UNK 0 0.010 7.268 0.000 0.00 0.00 O+0 HETATM 18 P UNK 0 1.588 7.186 0.000 0.00 0.00 P+0 HETATM 19 O UNK 0 1.930 8.855 0.000 0.00 0.00 O+0 HETATM 20 O UNK 0 0.724 8.643 0.000 0.00 0.00 O+0 HETATM 21 O UNK 0 3.103 6.661 0.000 0.00 0.00 O+0 HETATM 22 C UNK 0 4.413 5.759 0.000 0.00 0.00 C+0 HETATM 23 C UNK 0 5.019 4.289 0.000 0.00 0.00 C+0 HETATM 24 C UNK 0 6.550 5.229 0.000 0.00 0.00 C+0 HETATM 25 O UNK 0 7.286 6.987 0.000 0.00 0.00 O+0 HETATM 26 C UNK 0 8.532 8.061 0.000 0.00 0.00 C+0 HETATM 27 O UNK 0 8.711 9.675 0.000 0.00 0.00 O+0 HETATM 28 C UNK 0 9.945 7.389 0.000 0.00 0.00 C+0 HETATM 29 C UNK 0 11.314 8.111 0.000 0.00 0.00 C+0 HETATM 30 C UNK 0 12.344 6.927 0.000 0.00 0.00 C+0 HETATM 31 C UNK 0 13.560 7.901 0.000 0.00 0.00 C+0 HETATM 32 C UNK 0 14.786 6.921 0.000 0.00 0.00 C+0 HETATM 33 C UNK 0 16.025 7.882 0.000 0.00 0.00 C+0 HETATM 34 C UNK 0 17.454 7.249 0.000 0.00 0.00 C+0 HETATM 35 C UNK 0 18.873 7.928 0.000 0.00 0.00 C+0 HETATM 36 C UNK 0 20.155 6.987 0.000 0.00 0.00 C+0 HETATM 37 C UNK 0 21.478 7.830 0.000 0.00 0.00 C+0 HETATM 38 C UNK 0 20.279 5.409 0.000 0.00 0.00 C+0 HETATM 39 O UNK 0 6.077 3.108 0.000 0.00 0.00 O+0 HETATM 40 C UNK 0 7.016 1.832 0.000 0.00 0.00 C+0 HETATM 41 O UNK 0 8.667 1.759 0.000 0.00 0.00 O+0 HETATM 42 C UNK 0 7.647 0.375 0.000 0.00 0.00 C+0 HETATM 43 C UNK 0 6.794 -0.956 0.000 0.00 0.00 C+0 HETATM 44 C UNK 0 5.480 -1.869 0.000 0.00 0.00 C+0 HETATM 45 C UNK 0 3.924 -2.270 0.000 0.00 0.00 C+0 HETATM 46 C UNK 0 2.338 -2.178 0.000 0.00 0.00 C+0 HETATM 47 C UNK 0 0.762 -1.888 0.000 0.00 0.00 C+0 HETATM 48 C UNK 0 -0.248 -0.630 0.000 0.00 0.00 C+0 HETATM 49 C UNK 0 1.057 0.266 0.000 0.00 0.00 C+0 HETATM 50 O UNK 0 2.516 -0.328 0.000 0.00 0.00 O+0 HETATM 51 C UNK 0 2.310 1.209 0.000 0.00 0.00 C+0 HETATM 52 C UNK 0 2.395 2.779 0.000 0.00 0.00 C+0 HETATM 53 O UNK 0 3.891 2.182 0.000 0.00 0.00 O+0 HETATM 54 C UNK 0 1.147 3.645 0.000 0.00 0.00 C+0 HETATM 55 C UNK 0 2.289 4.683 0.000 0.00 0.00 C+0 HETATM 56 C UNK 0 3.336 5.766 0.000 0.00 0.00 C+0 HETATM 57 C UNK 0 4.354 7.210 0.000 0.00 0.00 C+0 HETATM 58 O UNK 0 5.916 6.364 0.000 0.00 0.00 O+0 HETATM 59 C UNK 0 4.695 8.974 0.000 0.00 0.00 C+0 HETATM 60 C UNK 0 4.787 10.651 0.000 0.00 0.00 C+0 HETATM 61 C UNK 0 4.088 12.173 0.000 0.00 0.00 C+0 HETATM 62 C UNK 0 4.751 13.598 0.000 0.00 0.00 C+0 HETATM 63 C UNK 0 3.867 14.858 0.000 0.00 0.00 C+0 HETATM 64 C UNK 0 -1.985 4.062 0.000 0.00 0.00 C+0 HETATM 65 O UNK 0 -3.469 5.146 0.000 0.00 0.00 O+0 HETATM 66 C UNK 0 -0.301 4.288 0.000 0.00 0.00 C+0 HETATM 67 O UNK 0 -0.366 5.861 0.000 0.00 0.00 O+0 CONECT 1 2 CONECT 2 1 3 8 CONECT 3 2 4 CONECT 4 3 5 6 CONECT 5 4 CONECT 6 4 7 9 CONECT 7 6 8 CONECT 8 7 2 CONECT 9 6 10 48 CONECT 10 9 11 CONECT 11 10 12 64 CONECT 12 11 13 CONECT 13 12 14 CONECT 14 13 15 16 17 CONECT 15 14 CONECT 16 14 CONECT 17 14 18 CONECT 18 17 19 20 21 CONECT 19 18 CONECT 20 18 CONECT 21 18 22 CONECT 22 21 23 CONECT 23 22 24 39 CONECT 24 23 25 CONECT 25 24 26 CONECT 26 25 27 28 CONECT 27 26 CONECT 28 26 29 CONECT 29 28 30 CONECT 30 29 31 CONECT 31 30 32 CONECT 32 31 33 CONECT 33 32 34 CONECT 34 33 35 CONECT 35 34 36 CONECT 36 35 37 38 CONECT 37 36 CONECT 38 36 CONECT 39 23 40 CONECT 40 39 41 42 CONECT 41 40 CONECT 42 40 43 CONECT 43 42 44 CONECT 44 43 45 CONECT 45 44 46 CONECT 46 45 47 CONECT 47 46 48 CONECT 48 47 9 49 CONECT 49 48 50 51 CONECT 50 49 CONECT 51 49 52 CONECT 52 51 53 54 CONECT 53 52 CONECT 54 52 55 66 CONECT 55 54 56 CONECT 56 55 57 CONECT 57 56 58 59 CONECT 58 57 CONECT 59 57 60 CONECT 60 59 61 CONECT 61 60 62 CONECT 62 61 63 CONECT 63 62 CONECT 64 11 65 66 CONECT 65 64 CONECT 66 64 54 67 CONECT 67 66 MASTER 0 0 0 0 0 0 0 0 67 0 138 0 END 3D PDB for HMDB0293283 (CDP-DG(i-12:0/PGE2))COMPND HMDB0293283 HETATM 1 C1 UNL 1 -12.132 5.188 0.150 1.00 0.00 C HETATM 2 C2 UNL 1 -11.701 4.138 1.165 1.00 0.00 C HETATM 3 C3 UNL 1 -10.215 3.932 1.055 1.00 0.00 C HETATM 4 C4 UNL 1 -9.833 3.467 -0.323 1.00 0.00 C HETATM 5 C5 UNL 1 -10.498 2.148 -0.680 1.00 0.00 C HETATM 6 C6 UNL 1 -10.037 1.766 -2.083 1.00 0.00 C HETATM 7 O1 UNL 1 -10.589 0.579 -2.481 1.00 0.00 O HETATM 8 C7 UNL 1 -8.523 1.662 -2.080 1.00 0.00 C HETATM 9 C8 UNL 1 -7.939 0.507 -1.901 1.00 0.00 C HETATM 10 C9 UNL 1 -6.484 0.211 -1.866 1.00 0.00 C HETATM 11 C10 UNL 1 -5.675 1.470 -1.880 1.00 0.00 C HETATM 12 O2 UNL 1 -4.560 1.363 -2.767 1.00 0.00 O HETATM 13 C11 UNL 1 -5.005 1.761 -0.525 1.00 0.00 C HETATM 14 O3 UNL 1 -4.489 3.047 -0.619 1.00 0.00 O HETATM 15 C12 UNL 1 -3.837 0.783 -0.304 1.00 0.00 C HETATM 16 C13 UNL 1 -2.854 1.314 0.718 1.00 0.00 C HETATM 17 O4 UNL 1 -2.990 2.673 0.964 1.00 0.00 O HETATM 18 P1 UNL 1 -1.404 3.276 1.149 1.00 0.00 P HETATM 19 O5 UNL 1 -1.021 3.125 2.625 1.00 0.00 O HETATM 20 O6 UNL 1 -1.315 4.897 0.667 1.00 0.00 O HETATM 21 O7 UNL 1 -0.334 2.397 0.180 1.00 0.00 O HETATM 22 P2 UNL 1 0.988 1.816 1.067 1.00 0.00 P HETATM 23 O8 UNL 1 1.546 3.022 1.826 1.00 0.00 O HETATM 24 O9 UNL 1 0.534 0.612 2.166 1.00 0.00 O HETATM 25 O10 UNL 1 2.154 1.193 0.021 1.00 0.00 O HETATM 26 C14 UNL 1 2.022 -0.186 -0.181 1.00 0.00 C HETATM 27 C15 UNL 1 3.359 -0.893 -0.237 1.00 0.00 C HETATM 28 C16 UNL 1 4.391 0.123 0.201 1.00 0.00 C HETATM 29 O11 UNL 1 5.701 -0.421 0.124 1.00 0.00 O HETATM 30 C17 UNL 1 6.764 0.352 0.484 1.00 0.00 C HETATM 31 O12 UNL 1 6.624 1.516 0.877 1.00 0.00 O HETATM 32 C18 UNL 1 8.191 -0.181 0.419 1.00 0.00 C HETATM 33 C19 UNL 1 8.201 -1.576 -0.057 1.00 0.00 C HETATM 34 C20 UNL 1 9.461 -2.317 -0.096 1.00 0.00 C HETATM 35 C21 UNL 1 10.591 -1.843 -0.896 1.00 0.00 C HETATM 36 C22 UNL 1 11.261 -0.572 -0.495 1.00 0.00 C HETATM 37 C23 UNL 1 12.419 -0.305 -1.472 1.00 0.00 C HETATM 38 C24 UNL 1 13.084 0.978 -1.118 1.00 0.00 C HETATM 39 C25 UNL 1 13.638 0.938 0.276 1.00 0.00 C HETATM 40 C26 UNL 1 14.335 2.262 0.614 1.00 0.00 C HETATM 41 C27 UNL 1 13.324 3.409 0.511 1.00 0.00 C HETATM 42 C28 UNL 1 15.516 2.512 -0.270 1.00 0.00 C HETATM 43 O13 UNL 1 3.440 -1.995 0.598 1.00 0.00 O HETATM 44 C29 UNL 1 3.003 -3.268 0.442 1.00 0.00 C HETATM 45 O14 UNL 1 3.664 -4.257 0.838 1.00 0.00 O HETATM 46 C30 UNL 1 1.702 -3.535 -0.215 1.00 0.00 C HETATM 47 C31 UNL 1 0.670 -3.723 0.862 1.00 0.00 C HETATM 48 C32 UNL 1 -0.429 -4.669 0.547 1.00 0.00 C HETATM 49 C33 UNL 1 -1.029 -4.554 -0.790 1.00 0.00 C HETATM 50 C34 UNL 1 -2.331 -4.604 -1.043 1.00 0.00 C HETATM 51 C35 UNL 1 -3.376 -3.855 -0.273 1.00 0.00 C HETATM 52 C36 UNL 1 -3.542 -2.446 -0.798 1.00 0.00 C HETATM 53 C37 UNL 1 -4.731 -2.427 -1.718 1.00 0.00 C HETATM 54 O15 UNL 1 -5.611 -3.230 -1.492 1.00 0.00 O HETATM 55 C38 UNL 1 -4.888 -1.510 -2.859 1.00 0.00 C HETATM 56 C39 UNL 1 -6.152 -0.754 -2.957 1.00 0.00 C HETATM 57 O16 UNL 1 -7.207 -1.691 -3.065 1.00 0.00 O HETATM 58 C40 UNL 1 -3.635 -1.488 0.301 1.00 0.00 C HETATM 59 N1 UNL 1 -4.110 -2.092 1.530 1.00 0.00 N HETATM 60 C41 UNL 1 -5.404 -2.399 1.683 1.00 0.00 C HETATM 61 C42 UNL 1 -5.889 -2.951 2.839 1.00 0.00 C HETATM 62 C43 UNL 1 -4.981 -3.182 3.857 1.00 0.00 C HETATM 63 N2 UNL 1 -5.443 -3.760 5.088 1.00 0.00 N HETATM 64 N3 UNL 1 -3.688 -2.862 3.671 1.00 0.00 N HETATM 65 C44 UNL 1 -3.240 -2.325 2.534 1.00 0.00 C HETATM 66 O17 UNL 1 -1.998 -2.029 2.389 1.00 0.00 O HETATM 67 O18 UNL 1 -4.372 -0.362 0.124 1.00 0.00 O HETATM 68 H1 UNL 1 -12.989 5.747 0.564 1.00 0.00 H HETATM 69 H2 UNL 1 -12.381 4.698 -0.810 1.00 0.00 H HETATM 70 H3 UNL 1 -11.310 5.896 -0.042 1.00 0.00 H HETATM 71 H4 UNL 1 -12.239 3.202 0.964 1.00 0.00 H HETATM 72 H5 UNL 1 -11.966 4.511 2.179 1.00 0.00 H HETATM 73 H6 UNL 1 -9.638 4.830 1.298 1.00 0.00 H HETATM 74 H7 UNL 1 -9.950 3.131 1.784 1.00 0.00 H HETATM 75 H8 UNL 1 -8.738 3.399 -0.394 1.00 0.00 H HETATM 76 H9 UNL 1 -10.150 4.242 -1.042 1.00 0.00 H HETATM 77 H10 UNL 1 -10.271 1.372 0.066 1.00 0.00 H HETATM 78 H11 UNL 1 -11.593 2.276 -0.730 1.00 0.00 H HETATM 79 H12 UNL 1 -10.314 2.590 -2.742 1.00 0.00 H HETATM 80 H13 UNL 1 -10.932 0.108 -1.662 1.00 0.00 H HETATM 81 H14 UNL 1 -7.980 2.568 -2.231 1.00 0.00 H HETATM 82 H15 UNL 1 -8.617 -0.373 -1.754 1.00 0.00 H HETATM 83 H16 UNL 1 -6.351 -0.270 -0.850 1.00 0.00 H HETATM 84 H17 UNL 1 -6.181 2.392 -2.141 1.00 0.00 H HETATM 85 H18 UNL 1 -4.667 1.979 -3.527 1.00 0.00 H HETATM 86 H19 UNL 1 -5.746 1.708 0.270 1.00 0.00 H HETATM 87 H20 UNL 1 -3.869 3.047 -1.392 1.00 0.00 H HETATM 88 H21 UNL 1 -3.301 0.798 -1.269 1.00 0.00 H HETATM 89 H22 UNL 1 -3.047 0.782 1.672 1.00 0.00 H HETATM 90 H23 UNL 1 -1.806 1.044 0.446 1.00 0.00 H HETATM 91 H24 UNL 1 -0.445 5.246 1.008 1.00 0.00 H HETATM 92 H25 UNL 1 -0.156 0.000 1.823 1.00 0.00 H HETATM 93 H26 UNL 1 1.354 -0.574 0.585 1.00 0.00 H HETATM 94 H27 UNL 1 1.468 -0.290 -1.164 1.00 0.00 H HETATM 95 H28 UNL 1 3.564 -1.104 -1.301 1.00 0.00 H HETATM 96 H29 UNL 1 4.204 0.345 1.271 1.00 0.00 H HETATM 97 H30 UNL 1 4.335 1.059 -0.399 1.00 0.00 H HETATM 98 H31 UNL 1 8.628 0.495 -0.375 1.00 0.00 H HETATM 99 H32 UNL 1 8.667 -0.077 1.395 1.00 0.00 H HETATM 100 H33 UNL 1 7.398 -2.181 0.507 1.00 0.00 H HETATM 101 H34 UNL 1 7.729 -1.551 -1.109 1.00 0.00 H HETATM 102 H35 UNL 1 9.825 -2.433 0.992 1.00 0.00 H HETATM 103 H36 UNL 1 9.259 -3.432 -0.343 1.00 0.00 H HETATM 104 H37 UNL 1 10.289 -1.791 -1.999 1.00 0.00 H HETATM 105 H38 UNL 1 11.374 -2.669 -0.885 1.00 0.00 H HETATM 106 H39 UNL 1 11.750 -0.724 0.526 1.00 0.00 H HETATM 107 H40 UNL 1 10.700 0.326 -0.417 1.00 0.00 H HETATM 108 H41 UNL 1 11.990 -0.311 -2.483 1.00 0.00 H HETATM 109 H42 UNL 1 13.117 -1.164 -1.358 1.00 0.00 H HETATM 110 H43 UNL 1 13.866 1.218 -1.874 1.00 0.00 H HETATM 111 H44 UNL 1 12.323 1.805 -1.222 1.00 0.00 H HETATM 112 H45 UNL 1 14.381 0.132 0.404 1.00 0.00 H HETATM 113 H46 UNL 1 12.790 0.874 1.014 1.00 0.00 H HETATM 114 H47 UNL 1 14.640 2.195 1.664 1.00 0.00 H HETATM 115 H48 UNL 1 13.752 4.254 1.092 1.00 0.00 H HETATM 116 H49 UNL 1 13.156 3.682 -0.553 1.00 0.00 H HETATM 117 H50 UNL 1 12.389 3.051 0.973 1.00 0.00 H HETATM 118 H51 UNL 1 15.261 3.353 -0.968 1.00 0.00 H HETATM 119 H52 UNL 1 15.886 1.623 -0.781 1.00 0.00 H HETATM 120 H53 UNL 1 16.355 2.913 0.371 1.00 0.00 H HETATM 121 H54 UNL 1 1.711 -4.441 -0.839 1.00 0.00 H HETATM 122 H55 UNL 1 1.477 -2.677 -0.881 1.00 0.00 H HETATM 123 H56 UNL 1 1.220 -4.164 1.750 1.00 0.00 H HETATM 124 H57 UNL 1 0.355 -2.724 1.222 1.00 0.00 H HETATM 125 H58 UNL 1 -1.239 -4.504 1.291 1.00 0.00 H HETATM 126 H59 UNL 1 -0.113 -5.740 0.737 1.00 0.00 H HETATM 127 H60 UNL 1 -0.301 -4.418 -1.617 1.00 0.00 H HETATM 128 H61 UNL 1 -2.663 -5.220 -1.866 1.00 0.00 H HETATM 129 H62 UNL 1 -3.132 -3.937 0.782 1.00 0.00 H HETATM 130 H63 UNL 1 -4.339 -4.439 -0.397 1.00 0.00 H HETATM 131 H64 UNL 1 -2.605 -2.301 -1.427 1.00 0.00 H HETATM 132 H65 UNL 1 -4.695 -2.071 -3.843 1.00 0.00 H HETATM 133 H66 UNL 1 -4.020 -0.821 -2.821 1.00 0.00 H HETATM 134 H67 UNL 1 -6.216 -0.193 -3.936 1.00 0.00 H HETATM 135 H68 UNL 1 -7.440 -1.963 -2.145 1.00 0.00 H HETATM 136 H69 UNL 1 -2.568 -1.118 0.493 1.00 0.00 H HETATM 137 H70 UNL 1 -6.135 -2.208 0.895 1.00 0.00 H HETATM 138 H71 UNL 1 -6.933 -3.207 2.982 1.00 0.00 H HETATM 139 H72 UNL 1 -4.981 -3.589 6.007 1.00 0.00 H HETATM 140 H73 UNL 1 -6.286 -4.385 5.070 1.00 0.00 H CONECT 1 2 68 69 70 CONECT 2 3 71 72 CONECT 3 4 73 74 CONECT 4 5 75 76 CONECT 5 6 77 78 CONECT 6 7 8 79 CONECT 7 80 CONECT 8 9 9 81 CONECT 9 10 82 CONECT 10 11 56 83 CONECT 11 12 13 84 CONECT 12 85 CONECT 13 14 15 86 CONECT 14 87 CONECT 15 16 67 88 CONECT 16 17 89 90 CONECT 17 18 CONECT 18 19 19 20 21 CONECT 20 91 CONECT 21 22 CONECT 22 23 23 24 25 CONECT 24 92 CONECT 25 26 CONECT 26 27 93 94 CONECT 27 28 43 95 CONECT 28 29 96 97 CONECT 29 30 CONECT 30 31 31 32 CONECT 32 33 98 99 CONECT 33 34 100 101 CONECT 34 35 102 103 CONECT 35 36 104 105 CONECT 36 37 106 107 CONECT 37 38 108 109 CONECT 38 39 110 111 CONECT 39 40 112 113 CONECT 40 41 42 114 CONECT 41 115 116 117 CONECT 42 118 119 120 CONECT 43 44 CONECT 44 45 45 46 CONECT 46 47 121 122 CONECT 47 48 123 124 CONECT 48 49 125 126 CONECT 49 50 50 127 CONECT 50 51 128 CONECT 51 52 129 130 CONECT 52 53 58 131 CONECT 53 54 54 55 CONECT 55 56 132 133 CONECT 56 57 134 CONECT 57 135 CONECT 58 59 67 136 CONECT 59 60 65 CONECT 60 61 61 137 CONECT 61 62 138 CONECT 62 63 64 64 CONECT 63 139 140 CONECT 64 65 CONECT 65 66 66 END SMILES for HMDB0293283 (CDP-DG(i-12:0/PGE2))CCCCC[C@H](O)C=C[C@H]1[C@H](O)CC(=O)[C@@H]2CC=CCCCC(=O)O[C@H](COC(=O)CCCCCCCCC(C)C)COP(O)(=O)OP(O)(=O)OC[C@@H](O[C@H]2N2C=CC(N)=NC2=O)[C@@H](O)[C@H]1O INCHI for HMDB0293283 (CDP-DG(i-12:0/PGE2))InChI=1S/C44H73N3O18P2/c1-4-5-12-18-31(48)22-23-33-35(49)26-36(50)34-19-14-10-11-16-21-40(52)63-32(27-60-39(51)20-15-9-7-6-8-13-17-30(2)3)28-61-66(56,57)65-67(58,59)62-29-37(42(54)41(33)53)64-43(34)47-25-24-38(45)46-44(47)55/h10,14,22-25,30-35,37,41-43,48-49,53-54H,4-9,11-13,15-21,26-29H2,1-3H3,(H,56,57)(H,58,59)(H2,45,46,55)/b14-10-,23-22-/t31-,32+,33-,34-,35+,37+,41-,42+,43+/m0/s1 3D Structure for HMDB0293283 (CDP-DG(i-12:0/PGE2)) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Synonyms |
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Chemical Formula | C44H73N3O18P2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Average Molecular Weight | 994.019 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Monoisotopic Molecular Weight | 993.436436519 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IUPAC Name | [(1R,9R,15Z,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacos-15-en-9-yl]methyl 10-methylundecanoate | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Traditional Name | [(1R,9R,15Z,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxopyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacos-15-en-9-yl]methyl 10-methylundecanoate | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAS Registry Number | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SMILES | CCCCC[C@H](O)C=C[C@H]1[C@H](O)CC(=O)[C@@H]2CC=CCCCC(=O)O[C@H](COC(=O)CCCCCCCCC(C)C)COP(O)(=O)OP(O)(=O)OC[C@@H](O[C@H]2N2C=CC(N)=NC2=O)[C@@H](O)[C@H]1O | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
InChI Identifier | InChI=1S/C44H73N3O18P2/c1-4-5-12-18-31(48)22-23-33-35(49)26-36(50)34-19-14-10-11-16-21-40(52)63-32(27-60-39(51)20-15-9-7-6-8-13-17-30(2)3)28-61-66(56,57)65-67(58,59)62-29-37(42(54)41(33)53)64-43(34)47-25-24-38(45)46-44(47)55/h10,14,22-25,30-35,37,41-43,48-49,53-54H,4-9,11-13,15-21,26-29H2,1-3H3,(H,56,57)(H,58,59)(H2,45,46,55)/b14-10-,23-22-/t31-,32+,33-,34-,35+,37+,41-,42+,43+/m0/s1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
InChI Key | XTRSTNPETPLIIK-ZKCWWABJSA-N | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chemical Taxonomy | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Classification | Not classified | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Ontology | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Physiological effect | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disposition | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Process | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Role | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Physical Properties | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
State | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Molecular Properties |
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Experimental Chromatographic Properties | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted Molecular Properties |
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Predicted Chromatographic Properties | Predicted Collision Cross Sections
Predicted Kovats Retention IndicesNot Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spectra | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MS/MS Spectra
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Biological Properties | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Locations | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Biospecimen Locations | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Tissue Locations | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pathways |
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Normal Concentrations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Abnormal Concentrations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Associated Disorders and Diseases | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disease References | None | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Associated OMIM IDs | None | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
External Links | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
DrugBank ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Phenol Explorer Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FooDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
KNApSAcK ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chemspider ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
KEGG Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BioCyc ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BiGG ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Wikipedia Link | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
METLIN ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PubChem Compound | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ChEBI ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Food Biomarker Ontology | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
VMH ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MarkerDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Good Scents ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
References | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Synthesis Reference | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Material Safety Data Sheet (MSDS) | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
General References |
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