Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 21:06:22 UTC
Update Date2021-09-23 21:06:22 UTC
HMDB IDHMDB0302844
Secondary Accession NumbersNone
Metabolite Identification
Common NamePhaseic acid
DescriptionPhaseic acid, also known as phaseate, belongs to abscisic acids and derivatives class of compounds. Those are terpene compounds containing the abscisic acid moiety, which is characterized by a 3-methylpenta-2,4-dienoic acid attached to the C1 carbon of a 4-oxocyclohex-2-ene moiety. Phaseic acid is practically insoluble (in water) and a weakly acidic compound (based on its pKa). Phaseic acid can be found in a number of food items such as boysenberry, prunus (cherry, plum), european plum, and wild rice, which makes phaseic acid a potential biomarker for the consumption of these food products. Phaseic acid is a terpenoid catabolite of abscisic acid. Like abscisic acid, it is a plant hormone associated with photosynthesis arrest and abscission .
Structure
Thumb
Synonyms
ValueSource
(2E,4E)-5-{8-hydroxy-1,5-dimethyl-3-oxo-6-oxabicyclo[3.2.1]octan-8-yl}-3-methylpenta-2,4-dienoateGenerator
PhaseateGenerator
Chemical FormulaC15H20O5
Average Molecular Weight280.3163
Monoisotopic Molecular Weight280.13107375
IUPAC Name(2E,4E)-5-{8-hydroxy-1,5-dimethyl-3-oxo-6-oxabicyclo[3.2.1]octan-8-yl}-3-methylpenta-2,4-dienoic acid
Traditional Name(2E,4E)-5-{8-hydroxy-1,5-dimethyl-3-oxo-6-oxabicyclo[3.2.1]octan-8-yl}-3-methylpenta-2,4-dienoic acid
CAS Registry NumberNot Available
SMILES
C\C(\C=C\C1(O)C2(C)COC1(C)CC(=O)C2)=C/C(O)=O
InChI Identifier
InChI=1S/C15H20O5/c1-10(6-12(17)18)4-5-15(19)13(2)7-11(16)8-14(15,3)20-9-13/h4-6,19H,7-9H2,1-3H3,(H,17,18)/b5-4+,10-6+
InChI KeyIZGYIFFQBZWOLJ-UMCKCUICSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as abscisic acids and derivatives. These are terpene compounds containing the abscisic acid moiety, which is characterized by a 3-methylpenta-2,4-dienoic acid attached to the C1 carbon of a 4-oxocyclohex-2-ene moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentAbscisic acids and derivatives
Alternative Parents
Substituents
  • Abscisic acid
  • Medium-chain fatty acid
  • Branched fatty acid
  • Heterocyclic fatty acid
  • Hydroxy fatty acid
  • Oxepane
  • Methyl-branched fatty acid
  • Fatty acyl
  • Fatty acid
  • Unsaturated fatty acid
  • Cyclic alcohol
  • Tertiary alcohol
  • Tetrahydrofuran
  • Ketone
  • Cyclic ketone
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Oxacycle
  • Ether
  • Dialkyl ether
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Carbonyl group
  • Organic oxide
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1ALOGPS
logP0.94ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)4.53ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area83.83 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity73.87 m³·mol⁻¹ChemAxon
Polarizability28.97 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+164.80632859911
AllCCS[M+H-H2O]+161.4332859911
AllCCS[M+Na]+168.83732859911
AllCCS[M+NH4]+167.93732859911
AllCCS[M-H]-169.42232859911
AllCCS[M+Na-2H]-169.6732859911
AllCCS[M+HCOO]-170.06632859911
DeepCCS[M+H]+185.12430932474
DeepCCS[M-H]-182.76630932474
DeepCCS[M-2H]-215.65330932474
DeepCCS[M+Na]+191.21730932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202210.3551 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.77 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1972.1 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid275.7 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid134.5 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid172.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid88.4 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid539.4 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid645.0 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)94.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1020.5 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid420.6 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1505.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid332.7 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid334.0 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate486.3 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA255.9 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water70.7 seconds40023050

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Phaseic acid,3TMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C)C2(C)C=C(O[Si](C)(C)C)CC1(C)OC2)=C\C(=O)O[Si](C)(C)C2375.2Semi standard non polar33892256
Phaseic acid,3TMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C)C2(C)C=C(O[Si](C)(C)C)CC1(C)OC2)=C\C(=O)O[Si](C)(C)C2240.0Standard non polar33892256
Phaseic acid,3TMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C)C2(C)C=C(O[Si](C)(C)C)CC1(C)OC2)=C\C(=O)O[Si](C)(C)C2567.3Standard polar33892256
Phaseic acid,3TMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C)C2(C)COC1(C)C=C(O[Si](C)(C)C)C2)=C\C(=O)O[Si](C)(C)C2400.1Semi standard non polar33892256
Phaseic acid,3TMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C)C2(C)COC1(C)C=C(O[Si](C)(C)C)C2)=C\C(=O)O[Si](C)(C)C2249.6Standard non polar33892256
Phaseic acid,3TMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C)C2(C)COC1(C)C=C(O[Si](C)(C)C)C2)=C\C(=O)O[Si](C)(C)C2563.1Standard polar33892256
Phaseic acid,3TBDMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C2(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)OC2)=C\C(=O)O[Si](C)(C)C(C)(C)C3054.4Semi standard non polar33892256
Phaseic acid,3TBDMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C2(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)OC2)=C\C(=O)O[Si](C)(C)C(C)(C)C2860.3Standard non polar33892256
Phaseic acid,3TBDMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C2(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)OC2)=C\C(=O)O[Si](C)(C)C(C)(C)C2822.4Standard polar33892256
Phaseic acid,3TBDMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C2(C)COC1(C)C=C(O[Si](C)(C)C(C)(C)C)C2)=C\C(=O)O[Si](C)(C)C(C)(C)C3083.5Semi standard non polar33892256
Phaseic acid,3TBDMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C2(C)COC1(C)C=C(O[Si](C)(C)C(C)(C)C)C2)=C\C(=O)O[Si](C)(C)C(C)(C)C2851.1Standard non polar33892256
Phaseic acid,3TBDMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C2(C)COC1(C)C=C(O[Si](C)(C)C(C)(C)C)C2)=C\C(=O)O[Si](C)(C)C(C)(C)C2821.9Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 10V, Positive-QTOFsplash10-01q9-0090000000-6835c7113bf5ceb20a102016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 20V, Positive-QTOFsplash10-01bi-0190000000-156b07330945b2ad4b812016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 40V, Positive-QTOFsplash10-0uxr-7970000000-4f12dc78488206aae6ee2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 10V, Negative-QTOFsplash10-004r-0190000000-d21fdf7a899c368d10bf2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 20V, Negative-QTOFsplash10-00p0-1190000000-6da619f64cddd28f90262016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 40V, Negative-QTOFsplash10-053j-3790000000-c3ababeb0eb3646f396a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 10V, Positive-QTOFsplash10-029t-0090000000-01bbc923a22af0a41ef92021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 20V, Positive-QTOFsplash10-0v4j-1690000000-467f08066a949b8b4f3e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 40V, Positive-QTOFsplash10-015i-7490000000-d79c05ce7852488a12a72021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 10V, Negative-QTOFsplash10-000i-0090000000-364143652fa826f28f8d2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 20V, Negative-QTOFsplash10-0170-0390000000-a4a8a7b72cc53fd956e32021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phaseic acid 40V, Negative-QTOFsplash10-0gdi-2590000000-102ac2d7508972472d172021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB006507
KNApSAcK IDNot Available
Chemspider ID4516055
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available