| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2021-09-24 01:33:03 UTC |
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| Update Date | 2021-09-24 01:33:03 UTC |
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| HMDB ID | HMDB0303392 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | FIC |
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| Description | 5-fluoro-1H-indole-2-carboxylic acid belongs to the class of organic compounds known as indolecarboxylic acids and derivatives. Indolecarboxylic acids and derivatives are compounds containing a carboxylic acid group (or a derivative thereof) linked to an indole. Based on a literature review very few articles have been published on 5-fluoro-1H-indole-2-carboxylic acid. |
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| Structure | OC(=O)C1=CC2=CC(F)=CC=C2N1 InChI=1S/C9H6FNO2/c10-6-1-2-7-5(3-6)4-8(11-7)9(12)13/h1-4,11H,(H,12,13) |
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| Synonyms | | Value | Source |
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| 5-Fluoro-1H-indole-2-carboxylate | Generator |
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| Chemical Formula | C9H6FNO2 |
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| Average Molecular Weight | 179.1478 |
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| Monoisotopic Molecular Weight | 179.038256646 |
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| IUPAC Name | 5-fluoro-1H-indole-2-carboxylic acid |
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| Traditional Name | 5-fluoro-1H-indole-2-carboxylic acid |
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| CAS Registry Number | Not Available |
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| SMILES | OC(=O)C1=CC2=CC(F)=CC=C2N1 |
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| InChI Identifier | InChI=1S/C9H6FNO2/c10-6-1-2-7-5(3-6)4-8(11-7)9(12)13/h1-4,11H,(H,12,13) |
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| InChI Key | WTXBRZCVLDTWLP-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as indolecarboxylic acids and derivatives. Indolecarboxylic acids and derivatives are compounds containing a carboxylic acid group (or a derivative thereof) linked to an indole. |
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| Kingdom | Organic compounds |
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| Super Class | Organoheterocyclic compounds |
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| Class | Indoles and derivatives |
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| Sub Class | Indolecarboxylic acids and derivatives |
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| Direct Parent | Indolecarboxylic acids and derivatives |
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| Alternative Parents | |
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| Substituents | - Indolecarboxylic acid derivative
- Indole
- Pyrrole-2-carboxylic acid
- Pyrrole-2-carboxylic acid or derivatives
- Aryl halide
- Benzenoid
- Substituted pyrrole
- Aryl fluoride
- Heteroaromatic compound
- Pyrrole
- Azacycle
- Carboxylic acid derivative
- Carboxylic acid
- Monocarboxylic acid or derivatives
- Organopnictogen compound
- Organofluoride
- Organohalogen compound
- Organonitrogen compound
- Organic oxygen compound
- Organic nitrogen compound
- Organooxygen compound
- Hydrocarbon derivative
- Organic oxide
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Predicted by Siyang on May 30, 2022 | 12.2906 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.91 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 1564.5 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 375.3 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 117.7 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 243.6 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 206.0 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 422.5 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 458.6 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 97.1 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 958.0 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 347.9 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1092.9 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 291.8 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 318.7 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 423.4 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 226.9 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 50.0 seconds | 40023050 |
Predicted Kovats Retention IndicesDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| FIC,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C | 1889.2 | Semi standard non polar | 33892256 | | FIC,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C | 1866.4 | Standard non polar | 33892256 | | FIC,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C | 1846.3 | Standard polar | 33892256 | | FIC,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C(C)(C)C | 2274.3 | Semi standard non polar | 33892256 | | FIC,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C(C)(C)C | 2286.4 | Standard non polar | 33892256 | | FIC,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C(C)(C)C | 2152.3 | Standard polar | 33892256 |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 10V, Positive-QTOF | splash10-001i-0900000000-4744f7966e635f3fc778 | 2016-06-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 20V, Positive-QTOF | splash10-001i-0900000000-11106949ce3ca1c5e83b | 2016-06-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 40V, Positive-QTOF | splash10-03xr-0900000000-53ab7ade0fea655dd4f8 | 2016-06-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 10V, Negative-QTOF | splash10-004i-0900000000-bc309b5c19319946bfe8 | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 20V, Negative-QTOF | splash10-0059-0900000000-3f9c0d571c5f3e2716fd | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 40V, Negative-QTOF | splash10-03e9-0900000000-b516ed1b13722cc9f190 | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 10V, Positive-QTOF | splash10-001i-0900000000-92c5de9669dca5074a00 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 20V, Positive-QTOF | splash10-03e9-0900000000-2545c9634d2ed592141a | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 40V, Positive-QTOF | splash10-03e9-1900000000-f845ba09a7beb1a32c00 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 10V, Negative-QTOF | splash10-003r-0900000000-fc12d8d85809cbcb8a60 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 20V, Negative-QTOF | splash10-001i-0900000000-6c456b2ab52a5242a6f4 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - FIC 40V, Negative-QTOF | splash10-001i-0900000000-6c456b2ab52a5242a6f4 | 2021-10-21 | Wishart Lab | View Spectrum |
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