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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 09:26:37 UTC
Update Date2021-09-24 09:26:37 UTC
HMDB IDHMDB0304393
Secondary Accession NumbersNone
Metabolite Identification
Common Nameindole-3-glycol aldehyde
DescriptionIndole-3-glycol aldehyde, also known as 2-hydroxy-2-(1h-indol-3-yl)acetaldehyde, is a member of the class of compounds known as 3-alkylindoles. 3-alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position. Indole-3-glycol aldehyde is slightly soluble (in water) and a very weakly acidic compound (based on its pKa). Indole-3-glycol aldehyde can be found in a number of food items such as tree fern, jostaberry, pitanga, and pine nut, which makes indole-3-glycol aldehyde a potential biomarker for the consumption of these food products.
Structure
Thumb
Synonyms
ValueSource
3-IndolylglycolaldehydeChEBI
3-IndoleglycolaldehydeKEGG
Chemical FormulaC10H9NO2
Average Molecular Weight175.187
Monoisotopic Molecular Weight175.063328534
IUPAC Name2-hydroxy-2-(1H-indol-3-yl)acetaldehyde
Traditional Name3-indoleglycolaldehyde
CAS Registry NumberNot Available
SMILES
OC(C=O)C1=CNC2=C1C=CC=C2
InChI Identifier
InChI=1S/C10H9NO2/c12-6-10(13)8-5-11-9-4-2-1-3-7(8)9/h1-6,10-11,13H
InChI KeyXKZDNWMDLGQXML-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassIndoles
Direct Parent3-alkylindoles
Alternative Parents
Substituents
  • 3-alkylindole
  • Substituted pyrrole
  • Benzenoid
  • Pyrrole
  • Heteroaromatic compound
  • Alpha-hydroxyaldehyde
  • Secondary alcohol
  • Azacycle
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic alcohol
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Aldehyde
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.27ALOGPS
logP0.84ChemAxon
logS-1.6ALOGPS
pKa (Strongest Acidic)12.96ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area53.09 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity48.86 m³·mol⁻¹ChemAxon
Polarizability17.77 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+138.54332859911
AllCCS[M+H-H2O]+134.1132859911
AllCCS[M+Na]+143.86632859911
AllCCS[M+NH4]+142.67532859911
AllCCS[M-H]-137.38832859911
AllCCS[M+Na-2H]-137.76732859911
AllCCS[M+HCOO]-138.26432859911
DeepCCS[M+H]+135.41630932474
DeepCCS[M-H]-132.69730932474
DeepCCS[M-2H]-168.65830932474
DeepCCS[M+Na]+144.15530932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
indole-3-glycol aldehyde,2TMS,isomer #1C[Si](C)(C)OC=C(O[Si](C)(C)C)C1=C[NH]C2=CC=CC=C122156.1Semi standard non polar33892256
indole-3-glycol aldehyde,2TMS,isomer #1C[Si](C)(C)OC=C(O[Si](C)(C)C)C1=C[NH]C2=CC=CC=C121997.0Standard non polar33892256
indole-3-glycol aldehyde,2TMS,isomer #1C[Si](C)(C)OC=C(O[Si](C)(C)C)C1=C[NH]C2=CC=CC=C122249.2Standard polar33892256
indole-3-glycol aldehyde,2TMS,isomer #2C[Si](C)(C)OC(C=O)C1=CN([Si](C)(C)C)C2=CC=CC=C121971.2Semi standard non polar33892256
indole-3-glycol aldehyde,2TMS,isomer #2C[Si](C)(C)OC(C=O)C1=CN([Si](C)(C)C)C2=CC=CC=C121911.1Standard non polar33892256
indole-3-glycol aldehyde,2TMS,isomer #2C[Si](C)(C)OC(C=O)C1=CN([Si](C)(C)C)C2=CC=CC=C122098.8Standard polar33892256
indole-3-glycol aldehyde,2TMS,isomer #3C[Si](C)(C)OC=C(O)C1=CN([Si](C)(C)C)C2=CC=CC=C122169.5Semi standard non polar33892256
indole-3-glycol aldehyde,2TMS,isomer #3C[Si](C)(C)OC=C(O)C1=CN([Si](C)(C)C)C2=CC=CC=C122129.0Standard non polar33892256
indole-3-glycol aldehyde,2TMS,isomer #3C[Si](C)(C)OC=C(O)C1=CN([Si](C)(C)C)C2=CC=CC=C122208.6Standard polar33892256
indole-3-glycol aldehyde,3TMS,isomer #1C[Si](C)(C)OC=C(O[Si](C)(C)C)C1=CN([Si](C)(C)C)C2=CC=CC=C122213.4Semi standard non polar33892256
indole-3-glycol aldehyde,3TMS,isomer #1C[Si](C)(C)OC=C(O[Si](C)(C)C)C1=CN([Si](C)(C)C)C2=CC=CC=C122146.1Standard non polar33892256
indole-3-glycol aldehyde,3TMS,isomer #1C[Si](C)(C)OC=C(O[Si](C)(C)C)C1=CN([Si](C)(C)C)C2=CC=CC=C122167.7Standard polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C1=C[NH]C2=CC=CC=C122623.9Semi standard non polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C1=C[NH]C2=CC=CC=C122395.4Standard non polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C1=C[NH]C2=CC=CC=C122482.9Standard polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(C=O)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122414.3Semi standard non polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(C=O)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122322.1Standard non polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(C=O)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122341.9Standard polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC=C(O)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122609.6Semi standard non polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC=C(O)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122508.6Standard non polar33892256
indole-3-glycol aldehyde,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC=C(O)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122451.0Standard polar33892256
indole-3-glycol aldehyde,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122783.3Semi standard non polar33892256
indole-3-glycol aldehyde,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122708.4Standard non polar33892256
indole-3-glycol aldehyde,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C122481.2Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 10V, Positive-QTOFsplash10-004i-0900000000-9eb0265c8a9ea57a6a022019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 20V, Positive-QTOFsplash10-056r-0900000000-d161a56368da594ef7f72019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 40V, Positive-QTOFsplash10-056u-3900000000-ef3b0d644c0534803ee92019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 10V, Negative-QTOFsplash10-00di-0900000000-a75754e20ca2bb05b17c2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 20V, Negative-QTOFsplash10-01b9-0900000000-d305932214665971982b2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 40V, Negative-QTOFsplash10-014i-1900000000-78fa841ba26333558ca92019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 10V, Positive-QTOFsplash10-0059-0900000000-2aa51e20d60abb986e3f2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 20V, Positive-QTOFsplash10-0059-0900000000-b17cf61a13a1e14e4c472021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 40V, Positive-QTOFsplash10-014l-2900000000-d19619e76164ef86979f2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 10V, Negative-QTOFsplash10-01b9-0900000000-bcf61a46a812bcd93d642021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 20V, Negative-QTOFsplash10-014i-0900000000-52ea5c8fbc3e508da8192021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - indole-3-glycol aldehyde 40V, Negative-QTOFsplash10-014i-0900000000-89c3f30c8225ba6d5d622021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB030940
KNApSAcK IDNot Available
Chemspider ID388979
KEGG Compound IDC03230
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound439951
PDB IDNot Available
ChEBI ID15976
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available