Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2021-09-24 11:02:21 UTC |
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Update Date | 2021-09-24 11:02:21 UTC |
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HMDB ID | HMDB0304602 |
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Secondary Accession Numbers | None |
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Metabolite Identification |
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Common Name | 3-epi-Fagomine |
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Description | 3-epi-Fagomine belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms. 3-epi-Fagomine has been detected, but not quantified in, castanospermum australes (Castanospermum australe). This could make 3-epi-fagomine a potential biomarker for the consumption of these foods. 3-epi-Fagomine is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review a significant number of articles have been published on 3-epi-Fagomine. |
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Structure | OC[C@H]1NCC[C@H](O)[C@@H]1O InChI=1S/C6H13NO3/c8-3-4-6(10)5(9)1-2-7-4/h4-10H,1-3H2/t4-,5+,6-/m1/s1 |
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Synonyms | Value | Source |
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3-Epifagomine | ChEBI | D-3-Epi-fagomine | HMDB | (2R,3R,4S)-2-(Hydroxymethyl)-3,4-piperidinediol | HMDB |
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Chemical Formula | C6H13NO3 |
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Average Molecular Weight | 147.174 |
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Monoisotopic Molecular Weight | 147.089543283 |
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IUPAC Name | (2R,3R,4S)-2-(hydroxymethyl)piperidine-3,4-diol |
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Traditional Name | (2R,3R,4S)-2-(hydroxymethyl)piperidine-3,4-diol |
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CAS Registry Number | Not Available |
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SMILES | OC[C@H]1NCC[C@H](O)[C@@H]1O |
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InChI Identifier | InChI=1S/C6H13NO3/c8-3-4-6(10)5(9)1-2-7-4/h4-10H,1-3H2/t4-,5+,6-/m1/s1 |
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InChI Key | YZNNBIPIQWYLDM-NGJCXOISSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms. |
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Kingdom | Organic compounds |
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Super Class | Organoheterocyclic compounds |
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Class | Piperidines |
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Sub Class | Not Available |
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Direct Parent | Piperidines |
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Alternative Parents | |
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Substituents | - Piperidine
- 1,2-aminoalcohol
- 1,2-diol
- Secondary alcohol
- Secondary aliphatic amine
- Azacycle
- Secondary amine
- Hydrocarbon derivative
- Organooxygen compound
- Organonitrogen compound
- Organic nitrogen compound
- Amine
- Primary alcohol
- Organic oxygen compound
- Alcohol
- Aliphatic heteromonocyclic compound
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Molecular Framework | Aliphatic heteromonocyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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3-epi-Fagomine,4TMS,isomer #1 | C[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)CCN1[Si](C)(C)C | 1698.6 | Semi standard non polar | 33892256 | 3-epi-Fagomine,4TMS,isomer #1 | C[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)CCN1[Si](C)(C)C | 1792.0 | Standard non polar | 33892256 | 3-epi-Fagomine,4TMS,isomer #1 | C[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)CCN1[Si](C)(C)C | 1743.1 | Standard polar | 33892256 | 3-epi-Fagomine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C | 2563.6 | Semi standard non polar | 33892256 | 3-epi-Fagomine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C | 2608.9 | Standard non polar | 33892256 | 3-epi-Fagomine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C | 2252.6 | Standard polar | 33892256 |
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| MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 10V, Positive-QTOF | splash10-000t-0900000000-b40800ba81e4d1847520 | 2019-02-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 20V, Positive-QTOF | splash10-01q9-0900000000-c4b1c4dba77ca1e9db4b | 2019-02-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 40V, Positive-QTOF | splash10-03dl-9600000000-8c5cb8447ec19256a71c | 2019-02-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 10V, Negative-QTOF | splash10-0002-0900000000-d89b3217065b8df2f46e | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 20V, Negative-QTOF | splash10-00kb-6900000000-36828f5fb706b6a4ddb1 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 40V, Negative-QTOF | splash10-0a4l-9000000000-5544c4cce17fb3d8d302 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 10V, Positive-QTOF | splash10-03e9-0900000000-af1e57e01fc85eeb862f | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 20V, Positive-QTOF | splash10-001j-5900000000-f038cfecd4438da4f325 | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 40V, Positive-QTOF | splash10-0a4i-9200000000-6fdcd83134b6d7537397 | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 10V, Negative-QTOF | splash10-0002-0900000000-f139716f16d745072c5a | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 20V, Negative-QTOF | splash10-0a4j-9400000000-8a791e320b3bb834d1b6 | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-epi-Fagomine 40V, Negative-QTOF | splash10-0a4l-9000000000-54b85f2d100a98c86df4 | 2021-10-21 | Wishart Lab | View Spectrum |
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