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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 11:40:52 UTC
Update Date2021-09-24 11:40:52 UTC
HMDB IDHMDB0304688
Secondary Accession NumbersNone
Metabolite Identification
Common NameHistamine-betaxanthin
Description(2S,4E)-4-[(2Z)-2-{[2-(1H-imidazol-5-yl)ethyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylic acid belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. Based on a literature review very few articles have been published on (2S,4E)-4-[(2Z)-2-{[2-(1H-imidazol-5-yl)ethyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylic acid.
Structure
Thumb
Synonyms
ValueSource
(2S,4E)-4-[(2Z)-2-{[2-(1H-imidazol-5-yl)ethyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylateGenerator
Chemical FormulaC14H16N4O4
Average Molecular Weight304.306
Monoisotopic Molecular Weight304.117155011
IUPAC Name(2S,4E)-4-[(2Z)-2-{[2-(1H-imidazol-5-yl)ethyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylic acid
Traditional Name(2S,4E)-4-[(2Z)-2-{[2-(3H-imidazol-4-yl)ethyl]imino}ethylidene]-2,3-dihydro-1H-pyridine-2,6-dicarboxylic acid
CAS Registry NumberNot Available
SMILES
[H][C@]1(C\C(=C/C=N\CCC2=CN=CN2)C=C(N1)C(O)=O)C(O)=O
InChI Identifier
InChI=1S/C14H16N4O4/c19-13(20)11-5-9(6-12(18-11)14(21)22)1-3-15-4-2-10-7-16-8-17-10/h1,3,5,7-8,12,18H,2,4,6H2,(H,16,17)(H,19,20)(H,21,22)/b9-1-,15-3-/t12-/m0/s1
InChI KeyNKVDSHYVFXEPFV-MSLONMJQSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentL-alpha-amino acids
Alternative Parents
Substituents
  • L-alpha-amino acid
  • Imidazolyl carboxylic acid derivative
  • Tetrahydropyridine
  • Dicarboxylic acid or derivatives
  • Hydropyridine
  • Azole
  • Imidazole
  • Heteroaromatic compound
  • Amino acid
  • Shiff base
  • Azacycle
  • Aldimine
  • Carboxylic acid
  • Secondary aliphatic amine
  • Enamine
  • Secondary amine
  • Organoheterocyclic compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Amine
  • Organic oxygen compound
  • Organopnictogen compound
  • Imine
  • Organonitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic nitrogen compound
  • Carbonyl group
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.74ALOGPS
logP-6ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)3.6ChemAxon
pKa (Strongest Basic)10.09ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area127.67 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity80.04 m³·mol⁻¹ChemAxon
Polarizability30.43 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+170.24832859911
AllCCS[M+H-H2O]+166.90732859911
AllCCS[M+Na]+174.23332859911
AllCCS[M+NH4]+173.34432859911
AllCCS[M-H]-170.54532859911
AllCCS[M+Na-2H]-170.36232859911
AllCCS[M+HCOO]-170.28932859911
DeepCCS[M+H]+167.14830932474
DeepCCS[M-H]-164.7930932474
DeepCCS[M-2H]-198.50630932474
DeepCCS[M+Na]+173.7830932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Histamine-betaxanthin,3TMS,isomer #1C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C)N13079.0Semi standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #1C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C)N12699.1Standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #1C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C)N14247.0Standard polar33892256
Histamine-betaxanthin,3TMS,isomer #2C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=C[NH]2)C[C@@H](C(=O)O[Si](C)(C)C)N1[Si](C)(C)C2999.0Semi standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #2C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=C[NH]2)C[C@@H](C(=O)O[Si](C)(C)C)N1[Si](C)(C)C2601.3Standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #2C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=C[NH]2)C[C@@H](C(=O)O[Si](C)(C)C)N1[Si](C)(C)C3775.5Standard polar33892256
Histamine-betaxanthin,3TMS,isomer #3C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O)N1[Si](C)(C)C3052.6Semi standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #3C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O)N1[Si](C)(C)C2664.9Standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #3C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O)N1[Si](C)(C)C3948.8Standard polar33892256
Histamine-betaxanthin,3TMS,isomer #4C[Si](C)(C)OC(=O)[C@@H]1C/C(=C\C=N/CCC2=CN=CN2[Si](C)(C)C)C=C(C(=O)O)N1[Si](C)(C)C3033.3Semi standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #4C[Si](C)(C)OC(=O)[C@@H]1C/C(=C\C=N/CCC2=CN=CN2[Si](C)(C)C)C=C(C(=O)O)N1[Si](C)(C)C2636.6Standard non polar33892256
Histamine-betaxanthin,3TMS,isomer #4C[Si](C)(C)OC(=O)[C@@H]1C/C(=C\C=N/CCC2=CN=CN2[Si](C)(C)C)C=C(C(=O)O)N1[Si](C)(C)C3932.3Standard polar33892256
Histamine-betaxanthin,4TMS,isomer #1C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C)N1[Si](C)(C)C3038.2Semi standard non polar33892256
Histamine-betaxanthin,4TMS,isomer #1C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C)N1[Si](C)(C)C2643.1Standard non polar33892256
Histamine-betaxanthin,4TMS,isomer #1C[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C)N1[Si](C)(C)C3621.1Standard polar33892256
Histamine-betaxanthin,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N13677.4Semi standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N13204.6Standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N14245.5Standard polar33892256
Histamine-betaxanthin,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=C[NH]2)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N1[Si](C)(C)C(C)(C)C3613.9Semi standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=C[NH]2)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N1[Si](C)(C)C(C)(C)C3012.1Standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=C[NH]2)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N1[Si](C)(C)C(C)(C)C3813.7Standard polar33892256
Histamine-betaxanthin,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O)N1[Si](C)(C)C(C)(C)C3707.8Semi standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O)N1[Si](C)(C)C(C)(C)C3063.2Standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O)N1[Si](C)(C)C(C)(C)C3981.6Standard polar33892256
Histamine-betaxanthin,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1C/C(=C\C=N/CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C=C(C(=O)O)N1[Si](C)(C)C(C)(C)C3701.2Semi standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1C/C(=C\C=N/CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C=C(C(=O)O)N1[Si](C)(C)C(C)(C)C3097.5Standard non polar33892256
Histamine-betaxanthin,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1C/C(=C\C=N/CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C=C(C(=O)O)N1[Si](C)(C)C(C)(C)C3969.1Standard polar33892256
Histamine-betaxanthin,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N1[Si](C)(C)C(C)(C)C3851.1Semi standard non polar33892256
Histamine-betaxanthin,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N1[Si](C)(C)C(C)(C)C3191.4Standard non polar33892256
Histamine-betaxanthin,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=C/C(=C/C=N\CCC2=CN=CN2[Si](C)(C)C(C)(C)C)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N1[Si](C)(C)C(C)(C)C3730.2Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Histamine-betaxanthin GC-MS (Non-derivatized) - 70eV, Positivesplash10-00e9-8690000000-0dc5ac4174e3bc6aa96f2017-07-27Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 10V, Positive-QTOFsplash10-0a4i-2479000000-c84af2fb4d6eece19f522017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 20V, Positive-QTOFsplash10-0lxy-4930000000-3caa7ecdbf9d54c794fd2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 40V, Positive-QTOFsplash10-0fdt-9800000000-1cdceaa5447cb60ae2792017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 10V, Negative-QTOFsplash10-0udi-0249000000-5a6468856955c9dbf6b12017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 20V, Negative-QTOFsplash10-0pc0-2693000000-9d7d28a3afccf182dd1e2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 40V, Negative-QTOFsplash10-02c6-9500000000-567ccead9f57768fa7da2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 10V, Positive-QTOFsplash10-0a4i-0029000000-69c7c680dd927009f5192021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 20V, Positive-QTOFsplash10-0a4l-0191000000-dd0159a6da40f7aab36d2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 40V, Positive-QTOFsplash10-0002-6930000000-268b2955e979582dc7492021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 10V, Negative-QTOFsplash10-0bt9-0191000000-3e6e61a13adaf5ad56d42021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 20V, Negative-QTOFsplash10-0900-0290000000-edc4f835f5d0c52a584c2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Histamine-betaxanthin 40V, Negative-QTOFsplash10-03xr-0950000000-5709530f6a3e1fcd824b2021-10-22Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB097294
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available