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Showing metabocard for SM(d18:1/16:0) (HMDB0010169)

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enzymes (52) Show 52 proteins
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2008-09-12 02:06:15 UTC
Update Date2022-03-07 02:50:51 UTC
HMDB IDHMDB0010169
Secondary Accession Numbers
  • HMDB0012098
  • HMDB0061712
  • HMDB10169
  • HMDB12098
  • HMDB61712
Metabolite Identification
Common NameSM(d18:1/16:0)
DescriptionSphingomyelin (d18:1/16:0) or SM(d18:1/16:0) is a type of sphingolipid found in animal cell membranes, especially in the membranous myelin sheath which surrounds some nerve cell axons. It usually consists of phosphorylcholine and ceramide. SM(d18:1/16:0) consists of a sphingosine backbone and a palmitic acid chain. In humans, sphingomyelin is the only membrane phospholipid not derived from glycerol. Like all sphingolipids, SM has a ceramide core (sphingosine bonded to a fatty acid via an amide linkage). In addition, it contains one polar head group, which is either phosphocholine or phosphoethanolamine. The plasma membrane of cells is highly enriched in sphingomyelin and is considered largely to be found in the exoplasmic leaflet of the cell membrane. However, there is some evidence that there may also be a sphingomyelin pool in the inner leaflet of the membrane. Moreover, neutral sphingomyelinase-2, an enzyme that breaks down sphingomyelin into ceramide, has been found to localize exclusively to the inner leaflet further suggesting that there may be sphingomyelin present there. Sphingomyelin can accumulate in a rare hereditary disease called Niemann-Pick Disease, types A and B. Niemann-Pick disease is a genetically-inherited disease caused by a deficiency in the enzyme sphingomyelinase, which causes the accumulation of sphingomyelin in spleen, liver, lungs, bone marrow, and the brain, causing irreversible neurological damage. SMs play a role in signal transduction. Sphingomyelins are synthesized by the transfer of phosphorylcholine from phosphatidylcholine to a ceramide in a reaction catalyzed by sphingomyelin synthase.
Structure
Data?1582752795
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0010169 (SM(d18:1/16:0))

SM(d18:1/16:0)
  Mrv1652303062020222D          

 49 48  0  0  0  0            999 V2000
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9590    0.3595    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2445    0.7720    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6570    1.4867    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1679    0.0574    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    0.4699    1.1847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1844    0.7721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8990    1.1847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6135    0.7721    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    2.2010    0.0576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2748    1.6360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3280    0.3596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0969    1.5430    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8110    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5251    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2393    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9534    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6675    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3816    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0957    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8099    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5240    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2381    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9522    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6663    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3805    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0946    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8087    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -1.5393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2236   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6519   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3660   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0801   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9366   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6507   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3648   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0789   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7931   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5072   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2213   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  1  3  1  1  0  0  0
  1  4  1  6  0  0  0
  6  5  1  0  0  0  0
  7  6  2  0  0  0  0
  8  6  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  1  0  0  0  0
  9  6  1  0  0  0  0
  5  2  1  0  0  0  0
  1 16  1  0  0  0  0
  4 33  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
M  CHG  2   8  -1  12   1
M  END
Download

3D MOL for HMDB0010169 (SM(d18:1/16:0))

HMDB0010169
     RDKit          3D
SM(d18:1/16:0)
127126  0  0  0  0  0  0  0  0999 V2000
   -4.7470   -0.1715    2.0533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8352   -0.5270    1.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4855   -0.3942   -0.3541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1185    1.0253   -0.6808 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7865    1.1697   -2.1441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4157    2.5646   -2.5333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2099    3.0539   -1.8240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7934    4.4466   -2.2190 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4777    4.6073   -3.6562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3118    3.7457   -4.1526 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1230    3.9561   -5.6270 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0495    3.2152   -6.2948 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3630    3.4399   -6.0367 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0295    3.2981   -4.7710 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0440    2.4001   -4.6130 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7608    2.2202   -3.3599 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2218    3.0809   -2.3810 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8414    0.8320   -2.8598 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4367    0.3927   -2.3949 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6624    0.4312   -3.5686 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1125   -0.1705   -3.2352 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.4951    0.4389   -2.0211 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8414    0.0788   -4.6202 O   0  0  0  0  0  1  0  0  0  0  0  0
    0.1980   -1.8581   -3.0253 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6026   -2.1943   -1.9597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6550   -3.6527   -1.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5844   -4.2714   -1.3175 N   0  0  0  0  0  4  0  0  0  0  0  0
    0.5161   -5.1209   -0.1340 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0200   -5.1210   -2.4207 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6431   -3.3063   -1.0740 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7522    0.7497   -1.7198 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0395   -0.4448   -1.0443 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4011   -1.4900   -1.4273 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9915   -0.6611    0.0530 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4094   -1.5892    1.0866 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3839   -0.9795    1.9368 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1936   -0.3097    1.3265 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4290    0.2129    2.5457 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2405    1.0184    2.2702 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0973    0.5102    1.5476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7264   -0.6170    1.9594 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4389   -0.6367    3.2420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5423   -0.6795    4.4169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2877   -0.6558    5.7363 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2966   -0.7690    6.8693 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4795   -2.0711    6.8006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4650   -3.2554    6.8793 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2547   -4.5790    6.7941 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0851    0.4654    2.9050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2701   -1.1118    2.4475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9127    0.3661    1.5631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7352    0.1048    1.3583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1685   -1.5693    1.3380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3947   -0.6664   -0.9369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6961   -1.1270   -0.6609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0741    1.6205   -0.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3699    1.4711   -0.0303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9396    0.4721   -2.4302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6514    0.7790   -2.7276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1583    2.5178   -3.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3217    3.1900   -2.3738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4464    3.1212   -0.7225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3993    2.3178   -1.9201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5076    5.2130   -1.9111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8457    4.6487   -1.6444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3161    4.4951   -4.3482 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1116    5.6633   -3.7992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3898    3.9944   -3.6240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5346    2.6646   -3.9515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9339    5.0691   -5.8281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0868    3.7892   -6.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2698    2.0939   -6.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    3.4523   -7.4319 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6158    4.4999   -6.4775 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9257    2.7885   -6.8079 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8239    3.8655   -3.8827 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3360    1.7774   -5.4793 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8308    2.6467   -3.4774 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    4.0033   -2.5396 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1192    0.1165   -3.6728 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0941    1.1059   -1.6449 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4077   -0.6183   -2.0093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3913   -1.5352   -1.0922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6567   -1.9022   -2.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1754   -4.1672   -2.4918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3422   -3.7734   -0.7617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0906   -6.0109   -0.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2205   -4.5430    0.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5589   -5.4624    0.0808 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1346   -5.2651   -2.3008 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5427   -6.1099   -2.3543 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7924   -4.5884   -3.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1848   -3.0471   -2.0041 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2919   -2.4444   -0.4980 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4185   -3.8289   -0.4373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2103    1.6281   -1.3885 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8805   -1.1883   -0.3772 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3825    0.2827    0.4863 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2040   -2.0079    1.7280 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9773   -2.4612    0.5479 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7870   -0.2575    2.6931 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9574   -1.8047    2.5919 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5558   -0.9555    0.7453 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5720    0.5992    0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1921    0.7174    3.1731 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  23  -1  27   1
M  END
Download

3D SDF for HMDB0010169 (SM(d18:1/16:0))

SM(d18:1/16:0)
  Mrv1652303062020222D          

 49 48  0  0  0  0            999 V2000
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    1.8990    1.1847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
M  CHG  2   8  -1  12   1
M  END
> <DATABASE_ID>
HMDB0010169

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C39H79N2O6P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-38(42)37(36-47-48(44,45)46-35-34-41(3,4)5)40-39(43)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h30,32,37-38,42H,6-29,31,33-36H2,1-5H3,(H-,40,43,44,45)/b32-30+/t37-,38+/m0/s1

> <INCHI_KEY>
RWKUXQNLWDTSLO-GWQJGLRPSA-N

> <FORMULA>
C39H79N2O6P

> <MOLECULAR_WEIGHT>
703.0281

> <EXACT_MASS>
702.567574782

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
127

> <JCHEM_AVERAGE_POLARIZABILITY>
88.7622979070575

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2S,3R,4E)-2-hexadecanamido-3-hydroxyoctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
5.12

> <JCHEM_LOGP>
6.976057740861588

> <ALOGPS_LOGS>
-7.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.49920132064026

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.865155035270682

> <JCHEM_PKA_STRONGEST_BASIC>
-1.050204146041731

> <JCHEM_POLAR_SURFACE_AREA>
107.92000000000002

> <JCHEM_REFRACTIVITY>
213.94190000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
36

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.27e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2S,3R,4E)-2-hexadecanamido-3-hydroxyoctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0010169 (SM(d18:1/16:0))

HMDB0010169
     RDKit          3D
SM(d18:1/16:0)
127126  0  0  0  0  0  0  0  0999 V2000
   -4.7470   -0.1715    2.0533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8352   -0.5270    1.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.1185    1.0253   -0.6808 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7865    1.1697   -2.1441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4157    2.5646   -2.5333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2099    3.0539   -1.8240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7934    4.4466   -2.2190 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4777    4.6073   -3.6562 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1230    3.9561   -5.6270 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0295    3.2981   -4.7710 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2701   -1.1118    2.4475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9127    0.3661    1.5631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7352    0.1048    1.3583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1685   -1.5693    1.3380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3947   -0.6664   -0.9369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6961   -1.1270   -0.6609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0741    1.6205   -0.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3699    1.4711   -0.0303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9396    0.4721   -2.4302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6514    0.7790   -2.7276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1583    2.5178   -3.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3217    3.1900   -2.3738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4464    3.1212   -0.7225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3993    2.3178   -1.9201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5076    5.2130   -1.9111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8457    4.6487   -1.6444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3161    4.4951   -4.3482 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1116    5.6633   -3.7992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3898    3.9944   -3.6240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5346    2.6646   -3.9515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9339    5.0691   -5.8281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0868    3.7892   -6.1847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2698    2.0939   -6.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    3.4523   -7.4319 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6158    4.4999   -6.4775 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9257    2.7885   -6.8079 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8239    3.8655   -3.8827 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3360    1.7774   -5.4793 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8308    2.6467   -3.4774 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    4.0033   -2.5396 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1192    0.1165   -3.6728 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0941    1.1059   -1.6449 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4077   -0.6183   -2.0093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3913   -1.5352   -1.0922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6567   -1.9022   -2.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1754   -4.1672   -2.4918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3422   -3.7734   -0.7617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0906   -6.0109   -0.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2205   -4.5430    0.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5589   -5.4624    0.0808 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1346   -5.2651   -2.3008 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5427   -6.1099   -2.3543 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7924   -4.5884   -3.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1848   -3.0471   -2.0041 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2919   -2.4444   -0.4980 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4185   -3.8289   -0.4373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2103    1.6281   -1.3885 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8805   -1.1883   -0.3772 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3825    0.2827    0.4863 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2040   -2.0079    1.7280 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9773   -2.4612    0.5479 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7870   -0.2575    2.6931 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9574   -1.8047    2.5919 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5558   -0.9555    0.7453 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5720    0.5992    0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1921    0.7174    3.1731 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1929   -0.7258    3.1351 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0415    1.6833    3.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6647    1.8724    1.5684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6283    1.3722    1.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4451    0.2710    0.4770 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0942   -1.5752    1.9371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4786   -0.8671    1.1361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2378    0.1454    3.3329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0357   -1.6073    3.2706 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2672    0.0498    4.4827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0097   -1.6824    4.3903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1312   -1.3362    5.7896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7081    0.3919    5.8187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8427   -0.7714    7.8319 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4233    0.0440    6.8154 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1905   -2.1315    5.9635 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0911   -2.1106    7.7401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0029   -3.2578    7.8719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2486   -3.1497    6.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4080   -4.8541    5.7132 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2327   -4.5726    7.3005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3874   -5.4070    7.2082 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 21 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  1  0
 27 30  1  0
 18 31  1  0
 31 32  1  0
 32 33  2  0
 32 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
  1 49  1  0
  1 50  1  0
  1 51  1  0
  2 52  1  0
  2 53  1  0
  3 54  1  0
  3 55  1  0
  4 56  1  0
  4 57  1  0
  5 58  1  0
  5 59  1  0
  6 60  1  0
  6 61  1  0
  7 62  1  0
  7 63  1  0
  8 64  1  0
  8 65  1  0
  9 66  1  0
  9 67  1  0
 10 68  1  0
 10 69  1  0
 11 70  1  0
 11 71  1  0
 12 72  1  0
 12 73  1  0
 13 74  1  0
 13 75  1  0
 14 76  1  0
 15 77  1  0
 16 78  1  6
 17 79  1  0
 18 80  1  6
 19 81  1  0
 19 82  1  0
 25 83  1  0
 25 84  1  0
 26 85  1  0
 26 86  1  0
 28 87  1  0
 28 88  1  0
 28 89  1  0
 29 90  1  0
 29 91  1  0
 29 92  1  0
 30 93  1  0
 30 94  1  0
 30 95  1  0
 31 96  1  0
 34 97  1  0
 34 98  1  0
 35 99  1  0
 35100  1  0
 36101  1  0
 36102  1  0
 37103  1  0
 37104  1  0
 38105  1  0
 38106  1  0
 39107  1  0
 39108  1  0
 40109  1  0
 40110  1  0
 41111  1  0
 41112  1  0
 42113  1  0
 42114  1  0
 43115  1  0
 43116  1  0
 44117  1  0
 44118  1  0
 45119  1  0
 45120  1  0
 46121  1  0
 46122  1  0
 47123  1  0
 47124  1  0
 48125  1  0
 48126  1  0
 48127  1  0
M  CHG  2  23  -1  27   1
M  END
Download

PDB for HMDB0010169 (SM(d18:1/16:0))

HEADER    PROTEIN                                 06-MAR-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: SM(d18:1/16:0)                                    
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAR-20         0                                  
HETATM    1  C   UNK     0      -4.447   0.670   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.113   1.440   0.000  0.00  0.00           C+0
HETATM    3  H   UNK     0      -3.677  -0.663   0.000  0.00  0.00           H+0
HETATM    4  N   UNK     0      -5.217  -0.663   0.000  0.00  0.00           N+0
HETATM    5  O   UNK     0      -1.790   0.671   0.000  0.00  0.00           O+0
HETATM    6  P   UNK     0      -0.456   1.441   0.000  0.00  0.00           P+0
HETATM    7  O   UNK     0      -1.226   2.775   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       0.313   0.107   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0       0.877   2.211   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.211   1.441   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.545   2.211   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       4.879   1.441   0.000  0.00  0.00           N+1
HETATM   13  C   UNK     0       4.109   0.108   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.113   3.054   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.212   0.671   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.781   1.440   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -5.781   2.880   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -7.114   0.669   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -8.447   1.440   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -9.780   0.669   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -11.113   1.440   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -12.446   0.669   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -13.779   1.440   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -15.112   0.669   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -16.445   1.440   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -17.778   0.669   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -19.111   1.440   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -20.444   0.669   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -21.777   1.440   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -23.110   0.669   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -24.443   1.440   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -25.776   0.669   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -6.551  -1.433   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -6.551  -2.873   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -7.884  -0.662   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -9.217  -1.433   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -10.550  -0.662   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -11.883  -1.433   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -13.216  -0.662   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -14.549  -1.433   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -15.882  -0.662   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -17.215  -1.433   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -18.548  -0.662   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -19.881  -1.433   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -21.214  -0.662   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0     -22.547  -1.433   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0     -23.880  -0.662   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -25.213  -1.433   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0     -26.546  -0.662   0.000  0.00  0.00           C+0
CONECT    1    2    3    4   16                                             
CONECT    2    1    5                                                       
CONECT    3    1                                                            
CONECT    4    1   33                                                       
CONECT    5    6    2                                                       
CONECT    6    5    7    8    9                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9   10    6                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12                                                            
CONECT   16    1   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31                                                            
CONECT   33    4   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48                                                            
MASTER        0    0    0    0    0    0    0    0   49    0   96    0
END
Download

3D PDB for HMDB0010169 (SM(d18:1/16:0))

COMPND    HMDB0010169
HETATM    1  C1  UNL     1      -4.747  -0.171   2.053  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.835  -0.527   1.092  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.485  -0.394  -0.354  1.00  0.00           C  
HETATM    4  C4  UNL     1      -5.119   1.025  -0.681  1.00  0.00           C  
HETATM    5  C5  UNL     1      -4.786   1.170  -2.144  1.00  0.00           C  
HETATM    6  C6  UNL     1      -4.416   2.565  -2.533  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.210   3.054  -1.824  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.793   4.447  -2.219  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.478   4.607  -3.656  1.00  0.00           C  
HETATM   10  C10 UNL     1      -1.312   3.746  -4.153  1.00  0.00           C  
HETATM   11  C11 UNL     1      -1.123   3.956  -5.627  1.00  0.00           C  
HETATM   12  C12 UNL     1      -0.049   3.215  -6.295  1.00  0.00           C  
HETATM   13  C13 UNL     1       1.363   3.440  -6.037  1.00  0.00           C  
HETATM   14  C14 UNL     1       2.030   3.298  -4.771  1.00  0.00           C  
HETATM   15  C15 UNL     1       3.044   2.400  -4.613  1.00  0.00           C  
HETATM   16  C16 UNL     1       3.761   2.220  -3.360  1.00  0.00           C  
HETATM   17  O1  UNL     1       3.222   3.081  -2.381  1.00  0.00           O  
HETATM   18  C17 UNL     1       3.841   0.832  -2.860  1.00  0.00           C  
HETATM   19  C18 UNL     1       2.437   0.393  -2.395  1.00  0.00           C  
HETATM   20  O2  UNL     1       1.662   0.431  -3.569  1.00  0.00           O  
HETATM   21  P1  UNL     1       0.113  -0.171  -3.235  1.00  0.00           P  
HETATM   22  O3  UNL     1      -0.495   0.439  -2.021  1.00  0.00           O  
HETATM   23  O4  UNL     1      -0.841   0.079  -4.620  1.00  0.00           O1-
HETATM   24  O5  UNL     1       0.198  -1.858  -3.025  1.00  0.00           O  
HETATM   25  C19 UNL     1      -0.603  -2.194  -1.960  1.00  0.00           C  
HETATM   26  C20 UNL     1      -0.655  -3.653  -1.648  1.00  0.00           C  
HETATM   27  N1  UNL     1       0.584  -4.271  -1.318  1.00  0.00           N1+
HETATM   28  C21 UNL     1       0.516  -5.121  -0.134  1.00  0.00           C  
HETATM   29  C22 UNL     1       1.020  -5.121  -2.421  1.00  0.00           C  
HETATM   30  C23 UNL     1       1.643  -3.306  -1.074  1.00  0.00           C  
HETATM   31  N2  UNL     1       4.752   0.750  -1.720  1.00  0.00           N  
HETATM   32  C24 UNL     1       5.040  -0.445  -1.044  1.00  0.00           C  
HETATM   33  O6  UNL     1       4.401  -1.490  -1.427  1.00  0.00           O  
HETATM   34  C25 UNL     1       5.992  -0.661   0.053  1.00  0.00           C  
HETATM   35  C26 UNL     1       5.409  -1.589   1.087  1.00  0.00           C  
HETATM   36  C27 UNL     1       4.384  -0.979   1.937  1.00  0.00           C  
HETATM   37  C28 UNL     1       3.194  -0.310   1.326  1.00  0.00           C  
HETATM   38  C29 UNL     1       2.429   0.213   2.546  1.00  0.00           C  
HETATM   39  C30 UNL     1       1.240   1.018   2.270  1.00  0.00           C  
HETATM   40  C31 UNL     1       0.097   0.510   1.548  1.00  0.00           C  
HETATM   41  C32 UNL     1      -0.726  -0.617   1.959  1.00  0.00           C  
HETATM   42  C33 UNL     1      -1.439  -0.637   3.242  1.00  0.00           C  
HETATM   43  C34 UNL     1      -0.542  -0.680   4.417  1.00  0.00           C  
HETATM   44  C35 UNL     1      -1.288  -0.656   5.736  1.00  0.00           C  
HETATM   45  C36 UNL     1      -0.297  -0.769   6.869  1.00  0.00           C  
HETATM   46  C37 UNL     1       0.480  -2.071   6.801  1.00  0.00           C  
HETATM   47  C38 UNL     1      -0.465  -3.255   6.879  1.00  0.00           C  
HETATM   48  C39 UNL     1       0.255  -4.579   6.794  1.00  0.00           C  
HETATM   49  H1  UNL     1      -5.085   0.465   2.905  1.00  0.00           H  
HETATM   50  H2  UNL     1      -4.270  -1.112   2.448  1.00  0.00           H  
HETATM   51  H3  UNL     1      -3.913   0.366   1.563  1.00  0.00           H  
HETATM   52  H4  UNL     1      -6.735   0.105   1.358  1.00  0.00           H  
HETATM   53  H5  UNL     1      -6.168  -1.569   1.338  1.00  0.00           H  
HETATM   54  H6  UNL     1      -6.395  -0.666  -0.937  1.00  0.00           H  
HETATM   55  H7  UNL     1      -4.696  -1.127  -0.661  1.00  0.00           H  
HETATM   56  H8  UNL     1      -6.074   1.621  -0.544  1.00  0.00           H  
HETATM   57  H9  UNL     1      -4.370   1.471  -0.030  1.00  0.00           H  
HETATM   58  H10 UNL     1      -3.940   0.472  -2.430  1.00  0.00           H  
HETATM   59  H11 UNL     1      -5.651   0.779  -2.728  1.00  0.00           H  
HETATM   60  H12 UNL     1      -4.158   2.518  -3.633  1.00  0.00           H  
HETATM   61  H13 UNL     1      -5.322   3.190  -2.374  1.00  0.00           H  
HETATM   62  H14 UNL     1      -3.446   3.121  -0.723  1.00  0.00           H  
HETATM   63  H15 UNL     1      -2.399   2.318  -1.920  1.00  0.00           H  
HETATM   64  H16 UNL     1      -3.508   5.213  -1.911  1.00  0.00           H  
HETATM   65  H17 UNL     1      -1.846   4.649  -1.644  1.00  0.00           H  
HETATM   66  H18 UNL     1      -3.316   4.495  -4.348  1.00  0.00           H  
HETATM   67  H19 UNL     1      -2.112   5.663  -3.799  1.00  0.00           H  
HETATM   68  H20 UNL     1      -0.390   3.994  -3.624  1.00  0.00           H  
HETATM   69  H21 UNL     1      -1.535   2.665  -3.952  1.00  0.00           H  
HETATM   70  H22 UNL     1      -0.934   5.069  -5.828  1.00  0.00           H  
HETATM   71  H23 UNL     1      -2.087   3.789  -6.185  1.00  0.00           H  
HETATM   72  H24 UNL     1      -0.270   2.094  -6.311  1.00  0.00           H  
HETATM   73  H25 UNL     1      -0.191   3.452  -7.432  1.00  0.00           H  
HETATM   74  H26 UNL     1       1.616   4.500  -6.478  1.00  0.00           H  
HETATM   75  H27 UNL     1       1.926   2.789  -6.808  1.00  0.00           H  
HETATM   76  H28 UNL     1       1.824   3.866  -3.883  1.00  0.00           H  
HETATM   77  H29 UNL     1       3.336   1.777  -5.479  1.00  0.00           H  
HETATM   78  H30 UNL     1       4.831   2.647  -3.477  1.00  0.00           H  
HETATM   79  H31 UNL     1       3.483   4.003  -2.540  1.00  0.00           H  
HETATM   80  H32 UNL     1       4.119   0.117  -3.673  1.00  0.00           H  
HETATM   81  H33 UNL     1       2.094   1.106  -1.645  1.00  0.00           H  
HETATM   82  H34 UNL     1       2.408  -0.618  -2.009  1.00  0.00           H  
HETATM   83  H35 UNL     1      -0.391  -1.535  -1.092  1.00  0.00           H  
HETATM   84  H36 UNL     1      -1.657  -1.902  -2.265  1.00  0.00           H  
HETATM   85  H37 UNL     1      -1.175  -4.167  -2.492  1.00  0.00           H  
HETATM   86  H38 UNL     1      -1.342  -3.773  -0.762  1.00  0.00           H  
HETATM   87  H39 UNL     1      -0.091  -6.011  -0.271  1.00  0.00           H  
HETATM   88  H40 UNL     1       0.220  -4.543   0.776  1.00  0.00           H  
HETATM   89  H41 UNL     1       1.559  -5.462   0.081  1.00  0.00           H  
HETATM   90  H42 UNL     1       2.135  -5.265  -2.301  1.00  0.00           H  
HETATM   91  H43 UNL     1       0.543  -6.110  -2.354  1.00  0.00           H  
HETATM   92  H44 UNL     1       0.792  -4.588  -3.365  1.00  0.00           H  
HETATM   93  H45 UNL     1       2.185  -3.047  -2.004  1.00  0.00           H  
HETATM   94  H46 UNL     1       1.292  -2.444  -0.498  1.00  0.00           H  
HETATM   95  H47 UNL     1       2.419  -3.829  -0.437  1.00  0.00           H  
HETATM   96  H48 UNL     1       5.210   1.628  -1.389  1.00  0.00           H  
HETATM   97  H49 UNL     1       6.880  -1.188  -0.377  1.00  0.00           H  
HETATM   98  H50 UNL     1       6.383   0.283   0.486  1.00  0.00           H  
HETATM   99  H51 UNL     1       6.204  -2.008   1.728  1.00  0.00           H  
HETATM  100  H52 UNL     1       4.977  -2.461   0.548  1.00  0.00           H  
HETATM  101  H53 UNL     1       4.787  -0.257   2.693  1.00  0.00           H  
HETATM  102  H54 UNL     1       3.957  -1.805   2.592  1.00  0.00           H  
HETATM  103  H55 UNL     1       2.556  -0.955   0.745  1.00  0.00           H  
HETATM  104  H56 UNL     1       3.572   0.599   0.788  1.00  0.00           H  
HETATM  105  H57 UNL     1       3.192   0.717   3.173  1.00  0.00           H  
HETATM  106  H58 UNL     1       2.193  -0.726   3.135  1.00  0.00           H  
HETATM  107  H59 UNL     1       1.041   1.683   3.169  1.00  0.00           H  
HETATM  108  H60 UNL     1       1.665   1.872   1.568  1.00  0.00           H  
HETATM  109  H61 UNL     1      -0.628   1.372   1.303  1.00  0.00           H  
HETATM  110  H62 UNL     1       0.445   0.271   0.477  1.00  0.00           H  
HETATM  111  H63 UNL     1      -0.094  -1.575   1.937  1.00  0.00           H  
HETATM  112  H64 UNL     1      -1.479  -0.867   1.136  1.00  0.00           H  
HETATM  113  H65 UNL     1      -2.238   0.145   3.333  1.00  0.00           H  
HETATM  114  H66 UNL     1      -2.036  -1.607   3.271  1.00  0.00           H  
HETATM  115  H67 UNL     1       0.267   0.050   4.483  1.00  0.00           H  
HETATM  116  H68 UNL     1      -0.010  -1.682   4.390  1.00  0.00           H  
HETATM  117  H69 UNL     1      -2.131  -1.336   5.790  1.00  0.00           H  
HETATM  118  H70 UNL     1      -1.708   0.392   5.819  1.00  0.00           H  
HETATM  119  H71 UNL     1      -0.843  -0.771   7.832  1.00  0.00           H  
HETATM  120  H72 UNL     1       0.423   0.044   6.815  1.00  0.00           H  
HETATM  121  H73 UNL     1       1.191  -2.131   5.963  1.00  0.00           H  
HETATM  122  H74 UNL     1       1.091  -2.111   7.740  1.00  0.00           H  
HETATM  123  H75 UNL     1      -1.003  -3.258   7.872  1.00  0.00           H  
HETATM  124  H76 UNL     1      -1.249  -3.150   6.111  1.00  0.00           H  
HETATM  125  H77 UNL     1       0.408  -4.854   5.713  1.00  0.00           H  
HETATM  126  H78 UNL     1       1.233  -4.573   7.301  1.00  0.00           H  
HETATM  127  H79 UNL     1      -0.387  -5.407   7.208  1.00  0.00           H  
CONECT    1    2   49   50   51
CONECT    2    3   52   53
CONECT    3    4   54   55
CONECT    4    5   56   57
CONECT    5    6   58   59
CONECT    6    7   60   61
CONECT    7    8   62   63
CONECT    8    9   64   65
CONECT    9   10   66   67
CONECT   10   11   68   69
CONECT   11   12   70   71
CONECT   12   13   72   73
CONECT   13   14   74   75
CONECT   14   15   15   76
CONECT   15   16   77
CONECT   16   17   18   78
CONECT   17   79
CONECT   18   19   31   80
CONECT   19   20   81   82
CONECT   20   21
CONECT   21   22   22   23   24
CONECT   24   25
CONECT   25   26   83   84
CONECT   26   27   85   86
CONECT   27   28   29   30
CONECT   28   87   88   89
CONECT   29   90   91   92
CONECT   30   93   94   95
CONECT   31   32   96
CONECT   32   33   33   34
CONECT   34   35   97   98
CONECT   35   36   99  100
CONECT   36   37  101  102
CONECT   37   38  103  104
CONECT   38   39  105  106
CONECT   39   40  107  108
CONECT   40   41  109  110
CONECT   41   42  111  112
CONECT   42   43  113  114
CONECT   43   44  115  116
CONECT   44   45  117  118
CONECT   45   46  119  120
CONECT   46   47  121  122
CONECT   47   48  123  124
CONECT   48  125  126  127
END
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SMILES for HMDB0010169 (SM(d18:1/16:0))

[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC
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INCHI for HMDB0010169 (SM(d18:1/16:0))

InChI=1S/C39H79N2O6P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-38(42)37(36-47-48(44,45)46-35-34-41(3,4)5)40-39(43)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h30,32,37-38,42H,6-29,31,33-36H2,1-5H3,(H-,40,43,44,45)/b32-30+/t37-,38+/m0/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
(2S,3R,4E)-2-(Palmitoylamino)-3-hydroxyoctadec-4-en-1-yl 2-(trimethylazaniumyl)ethyl phosphateChEBI
(2S,3R,4E)-3-Hydroxy-2-(palmitoylamino)octadec-4-en-1-yl 2-(trimethylazaniumyl)ethyl phosphateChEBI
C16 SphingomyelinChEBI
C16-SphingomyelinChEBI
Hexadecanoyl sphingomyelinChEBI
N-(Hexadecanoyl)-sphing-4-enine-1-phosphocholineChEBI
N-Hexadecanoylsphing-4-enine-1-phosphocholineChEBI
N-HexadecanoylsphingomyelinChEBI
N-Palmitoyl-D-erythro-sphingosylphosphorylcholineChEBI
N-Palmitoylsphing-4-enine-1-phosphocholineChEBI
N-PalmitoylsphingomyelinChEBI
N-Palmitoylsphingosine-1-phosphocholineChEBI
Palmitoyl sphingomyelinChEBI
Palmitoyl sphingomyelin (D18:1/16:0)ChEBI
PalmitoylsphingomyelinChEBI
SM(18:1/16:0)ChEBI
Sphingomyelin (D18:1/16:0)ChEBI
Sphingomyelin D18:1/16:0ChEBI
Sphingomyelin(D18:1/16:0)ChEBI
(2S,3R,4E)-2-(Palmitoylamino)-3-hydroxyoctadec-4-en-1-yl 2-(trimethylazaniumyl)ethyl phosphoric acidGenerator
(2S,3R,4E)-3-Hydroxy-2-(palmitoylamino)octadec-4-en-1-yl 2-(trimethylazaniumyl)ethyl phosphoric acidGenerator
N-Palmitoylsphingosine-phosphorylcholineHMDB
N-PSPCHMDB
N-Palmitoyl-D-erythrosphingosylphosphorylcholineHMDB
N-Palmitoyl-D-sphingomyelinHMDB
N-PalmitoylsphingosylphosphorylcholineHMDB
Sphingomyelin (D18:1 C16:0)HMDB
Sphingomyelin (DC18:1/c16:0)HMDB
Sphingomyelin 16:0HMDB
SphingomyelinMetBuilder
N-(Hexadecanoyl)-1-phosphocholine-sphing-4-enineMetBuilder
N-(Hexadecanoyl)-1-phosphocholine-sphingosineMetBuilder
N-(Hexadecanoyl)-1-phosphocholine-D-erythro-sphingosineMetBuilder
N-(Hexadecanoyl)-1-phosphocholine-4-sphingenineMetBuilder
N-(Hexadecanoyl)-1-phosphocholine-D-sphingosineMetBuilder
N-(Hexadecanoyl)-1-phosphocholine-sphingenineMetBuilder
N-(Hexadecanoyl)-1-phosphocholine-erythro-4-sphingenineMetBuilder
SM(D18:1/16:0)ChEBI
Chemical FormulaC39H79N2O6P
Average Molecular Weight703.0281
Monoisotopic Molecular Weight702.567574782
IUPAC Name(2-{[(2S,3R,4E)-2-hexadecanamido-3-hydroxyoctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium
Traditional Name(2-{[(2S,3R,4E)-2-hexadecanamido-3-hydroxyoctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium
CAS Registry Number6254-89-3
SMILES
[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC
InChI Identifier
InChI=1S/C39H79N2O6P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-38(42)37(36-47-48(44,45)46-35-34-41(3,4)5)40-39(43)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h30,32,37-38,42H,6-29,31,33-36H2,1-5H3,(H-,40,43,44,45)/b32-30+/t37-,38+/m0/s1
InChI KeyRWKUXQNLWDTSLO-GWQJGLRPSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphosphingolipids. These are sphingolipids with a structure based on a sphingoid base that is attached to a phosphate head group. They differ from phosphonospingolipids which have a phosphonate head group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSphingolipids
Sub ClassPhosphosphingolipids
Direct ParentPhosphosphingolipids
Alternative Parents
Substituents
  • Sphingoid-1-phosphate or derivatives
  • Phosphocholine
  • Phosphoethanolamine
  • Dialkyl phosphate
  • Fatty amide
  • N-acyl-amine
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Fatty acyl
  • Alkyl phosphate
  • Tetraalkylammonium salt
  • Quaternary ammonium salt
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Carboxamide group
  • Carboxylic acid derivative
  • Organic zwitterion
  • Alcohol
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Amine
  • Organic salt
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Not AvailableNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility5.3e-05 g/LALOGPS
logP5.12ALOGPS
logP6.98ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)1.87ChemAxon
pKa (Strongest Basic)-1.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area107.92 ŲChemAxon
Rotatable Bond Count36ChemAxon
Refractivity213.94 m³·mol⁻¹ChemAxon
Polarizability88.76 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+274.16430932474
DeepCCS[M-H]-272.06730932474
DeepCCS[M-2H]-305.30830932474
DeepCCS[M+Na]+280.07730932474
AllCCS[M+H]+284.332859911
AllCCS[M+H-H2O]+284.032859911
AllCCS[M+NH4]+284.532859911
AllCCS[M+Na]+284.532859911
AllCCS[M-H]-275.932859911
AllCCS[M+Na-2H]-279.532859911
AllCCS[M+HCOO]-283.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
SM(d18:1/16:0)[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC4625.6Standard polar33892256
SM(d18:1/16:0)[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC3954.2Standard non polar33892256
SM(d18:1/16:0)[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC4912.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
SM(d18:1/16:0),2TMS,isomer #1CCCCCCCCCCCCC/C=C/[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])OCC[N+](C)(C)C)N(C(=O)CCCCCCCCCCCCCCC)[Si](C)(C)C4730.9Semi standard non polar33892256
SM(d18:1/16:0),2TMS,isomer #1CCCCCCCCCCCCC/C=C/[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])OCC[N+](C)(C)C)N(C(=O)CCCCCCCCCCCCCCC)[Si](C)(C)C4490.3Standard non polar33892256
SM(d18:1/16:0),2TMS,isomer #1CCCCCCCCCCCCC/C=C/[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])OCC[N+](C)(C)C)N(C(=O)CCCCCCCCCCCCCCC)[Si](C)(C)C5259.1Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - SM(d18:1/16:0) GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - SM(d18:1/16:0) GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - SM(d18:1/16:0) GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - SM(d18:1/16:0) GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 10V, Positive-QTOFsplash10-0a4i-0000011900-1d22b33527aec6c2bac22021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 20V, Positive-QTOFsplash10-0a90-0000092900-aacf4f47e4b1b32167882021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 40V, Positive-QTOFsplash10-004i-0000091100-0e83614fafb2fa889b082021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 10V, Negative-QTOFsplash10-0udi-0000000900-6cd0aa91f5b1a16397c22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 20V, Negative-QTOFsplash10-0udi-1000012900-875caac785063a8a5f9d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 40V, Negative-QTOFsplash10-004i-9100000000-cc9e5e6d47f099ae5dbe2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 10V, Positive-QTOFsplash10-0ue9-0600000900-be758d36e1a256cac4a72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 20V, Positive-QTOFsplash10-0ue9-0600000900-be758d36e1a256cac4a72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 40V, Positive-QTOFsplash10-001i-0900001100-94967dd8d4d77f7fa4452021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 10V, Positive-QTOFsplash10-004i-0000011900-c5d2f234e24c0a593f9c2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 20V, Positive-QTOFsplash10-004o-0000092900-3c7e0616c8e11bafdb0f2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/16:0) 40V, Positive-QTOFsplash10-0006-0000091100-ec927235531ec4f37fc52021-09-25Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-18Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
  • Cerebrospinal Fluid (CSF)
  • Feces
  • Saliva
  • Urine
Tissue Locations
  • All Tissues
  • Placenta
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified60.00-190.0 uMAdult (>18 years old)Both
Normal		 details
BloodDetected and Quantified69.9 (61-79.4) uMNewborn (0-30 days old)Not Available
Normal		 details
BloodDetected and Quantified121 (101-139) uMInfant (0-1 year old)Not Available
Normal		 details
BloodDetected and Quantified81 +/- 0.9 uMAdult (>18 years old)BothNormal details
BloodDetected and Quantified114.4 +/- 19.7 uMAdult (>18 years old)BothNormal details
Cerebrospinal Fluid (CSF)Detected and Quantified0.336 +/- 0.109 uMAdult (>18 years old)Not SpecifiedNormal details
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal		 details
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal		 details
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
SalivaDetected and Quantified0.282 +/- 0.145 uMAdult (>18 years old)BothNormal
    • Zerihun T. Dame, ...
 details
UrineDetected and Quantified8.92 +/- 0.59 umol/mmol creatinineAdolescent (13-18 years old)Both
Normal		 details
UrineDetected and Quantified0.01 (0.0016-0.07) umol/mmol creatinineAdult (>18 years old)Both
Normal		 details
UrineDetected and Quantified0.0203 +/- 0.0374 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Normal
    • Analysis of 30 no...
 details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified79.1 +/- 20.6 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
BloodDetected and Quantified86.1 +/- 23.2 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
FecesDetected but not QuantifiedNot QuantifiedNewborn (0-30 days old)Not Specified
Premature neonates		 details
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothColorectal Cancer details
UrineDetected and Quantified6.94 +/- 0.42 umol/mmol creatinineAdolescent (13-18 years old)Both
Obese		 details
UrineDetected and Quantified0.0194 +/- 0.0383 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Eosinophilic esophagitis
    • Analysis of 30 no...
 details
UrineDetected and Quantified0.0218 +/- 0.0369 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Gastroesophageal reflux disease
    • Analysis of 30 no...
 details
Associated Disorders and Diseases
Disease References
Colorectal cancer
  1. Goedert JJ, Sampson JN, Moore SC, Xiao Q, Xiong X, Hayes RB, Ahn J, Shi J, Sinha R: Fecal metabolomics: assay performance and association with colorectal cancer. Carcinogenesis. 2014 Sep;35(9):2089-96. doi: 10.1093/carcin/bgu131. Epub 2014 Jul 18. [PubMed:25037050 ]
Eosinophilic esophagitis
  1. Slae, M., Huynh, H., Wishart, D.S. (2014). Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work). NA.
Obesity
  1. Cho K, Moon JS, Kang JH, Jang HB, Lee HJ, Park SI, Yu KS, Cho JY: Combined untargeted and targeted metabolomic profiling reveals urinary biomarkers for discriminating obese from normal-weight adolescents. Pediatr Obes. 2017 Apr;12(2):93-101. doi: 10.1111/ijpo.12114. Epub 2016 Feb 22. [PubMed:26910390 ]
  2. Simone Wahl, Christina Holzapfel, Zhonghao Yu, Michaela Breier, Ivan Kondofersky, Christiane Fuchs, Paula Singmann, Cornelia Prehn, Jerzy Adamski, Harald Grallert, Thomas Illig, Rui Wang-Sattler, Thomas Reinehr (2013). Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children. Metabolomics.
Associated OMIM IDs
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB027352
KNApSAcK IDNot Available
Chemspider ID8115562
KEGG Compound IDNot Available
BioCyc IDCPD66-42
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9939941
PDB IDNot Available
ChEBI ID78646
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
  6. Ghosh S, Strum JC, Bell RM: Lipid biochemistry: functions of glycerolipids and sphingolipids in cellular signaling. FASEB J. 1997 Jan;11(1):45-50. [PubMed:9034165 ]
  7. Hannun YA: The sphingomyelin cycle and the second messenger function of ceramide. J Biol Chem. 1994 Feb 4;269(5):3125-8. [PubMed:8106344 ]
  8. de Jong A, Cheng TY, Huang S, Gras S, Birkinshaw RW, Kasmar AG, Van Rhijn I, Pena-Cruz V, Ruan DT, Altman JD, Rossjohn J, Moody DB: CD1a-autoreactive T cells recognize natural skin oils that function as headless antigens. Nat Immunol. 2014 Feb;15(2):177-85. doi: 10.1038/ni.2790. Epub 2013 Dec 22. [PubMed:24362891 ]
  9. Elshenawy S, Pinney SE, Stuart T, Doulias PT, Zura G, Parry S, Elovitz MA, Bennett MJ, Bansal A, Strauss JF 3rd, Ischiropoulos H, Simmons RA: The Metabolomic Signature of the Placenta in Spontaneous Preterm Birth. Int J Mol Sci. 2020 Feb 4;21(3). pii: ijms21031043. doi: 10.3390/ijms21031043. [PubMed:32033212 ]
  10. Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
  11. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Only showing the first 10 proteins. There are 52 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
Catalyzes the formation of some glycolipid via the addition of N-acetylgalactosamine (GalNAc) in alpha-1,3-linkage to some substrate. Glycolipids probably serve for adherence of some pathogens
Gene Name:
GBGT1
Uniprot ID:
Q8N5D6
Molecular weight:
40126.9
Enzyme Details
2. N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
General function:
Involved in N-acetylglucosaminylphosphatidylinositol de
Specific function:
Involved in the second step of GPI biosynthesis. De-N-acetylation of N-acetylglucosaminyl-phosphatidylinositol.
Gene Name:
PIGL
Uniprot ID:
Q9Y2B2
Molecular weight:
28530.965
Enzyme Details
3. Phosphatidylcholine:ceramide cholinephosphotransferase 2
General function:
Involved in catalytic activity
Specific function:
Bidirectional lipid cholinephosphotransferase capable of converting phosphatidylcholine (PC) and ceramide to sphingomyelin (SM) and diacylglycerol (DAG) and vice versa. Direction is dependent on the relative concentrations of DAG and ceramide as phosphocholine acceptors. Directly and specifically recognizes the choline head group on the substrate. Also requires two fatty chains on the choline-P donor molecule in order to be recognized efficiently as a substrate. Does not function strictly as a SM synthase. Required for cell growth
Gene Name:
SGMS2
Uniprot ID:
Q8NHU3
Molecular weight:
42279.8
Enzyme Details
4. Phosphatidylcholine:ceramide cholinephosphotransferase 1
General function:
Involved in catalytic activity
Specific function:
Bidirectional lipid cholinephosphotransferase capable of converting phosphatidylcholine (PC) and ceramide to sphingomyelin (SM) and diacylglycerol (DAG) and vice versa. Direction is dependent on the relative concentrations of DAG and ceramide as phosphocholine acceptors. Directly and specifically recognizes the choline head group on the substrate. Also requires two fatty chains on the choline-P donor molecule in order to be recognized efficiently as a substrate. Does not function strictly as a SM synthase. Suppresses BAX-mediated apoptosis and also prevents cell death in response to stimuli such as hydrogen peroxide, osmotic stress, elevated temperature and exogenously supplied sphingolipids. May protect against cell death by reversing the stress-inducible increase in levels of proapoptotic ceramide. Required for cell growth
Gene Name:
SGMS1
Uniprot ID:
Q86VZ5
Molecular weight:
49207.3
Enzyme Details
5. Sphingomyelin phosphodiesterase
General function:
Involved in hydrolase activity
Specific function:
Converts sphingomyelin to ceramide. Also has phospholipase C activities toward 1,2-diacylglycerolphosphocholine and 1,2-diacylglycerolphosphoglycerol. Isoform 2 and isoform 3 have lost catalytic activity.
Gene Name:
SMPD1
Uniprot ID:
P17405
Molecular weight:
69935.53
Enzyme Details
6. Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
General function:
Involved in galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
Specific function:
Involved in the biosynthesis of L2/HNK-1 carbohydrate epitope on glycoproteins. Can also play a role in glycosaminoglycan biosynthesis. Substrates include asialo-orosomucoid (ASOR), asialo-fetuin, and asialo-neural cell adhesion molecule. Requires sphingomyelin for activity: stearoyl-sphingomyelin was the most effective, followed by palmitoyl-sphingomyelin and lignoceroyl-sphingomyelin. Activity was demonstrated only for sphingomyelin with a saturated fatty acid and not for that with an unsaturated fatty acid, regardless of the length of the acyl group (By similarity).
Gene Name:
B3GAT1
Uniprot ID:
Q9P2W7
Molecular weight:
38255.675
Enzyme Details
7. Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGQ
Uniprot ID:
Q9BRB3
Molecular weight:
65343.25
Enzyme Details
8. Phosphatidylinositol N-acetylglucosaminyltransferase subunit A
General function:
Involved in biosynthetic process
Specific function:
Necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, the very early intermediate in GPI-anchor biosynthesis.
Gene Name:
PIGA
Uniprot ID:
P37287
Molecular weight:
54126.065
Enzyme Details
9. Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltr
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGH
Uniprot ID:
Q14442
Molecular weight:
21080.415
Enzyme Details
10. Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltr
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGP
Uniprot ID:
P57054
Molecular weight:
18089.055

Only showing the first 10 proteins. There are 52 proteins in total.

Show all enzymes and transporters