Showing metabocard for Ganglioside GD1b (d18:0/26:1(17Z)) (HMDB0011821)
| Record Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Version | 5.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Status | Expected but not Quantified | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Creation Date | 2009-03-24 16:17:33 UTC | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Update Date | 2022-11-30 19:04:03 UTC | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HMDB ID | HMDB0011821 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Secondary Accession Numbers |
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| Metabolite Identification | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Common Name | Ganglioside GD1b (d18:0/26:1(17Z)) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description | Ganglioside GD1b (d18:0/26:1(17Z)) is a ganglioside. A ganglioside is a compound composed of a glycosphingolipid (ceramide and oligosaccharide) with one or more sialic acids (AKA n-acetylneuraminic acid, NANA) linked on the sugar chain. The 60+ known gangliosides differ mainly in the position and number of NANA residues. It is a component of the cell plasma membrane that modulates cell signal transduction events. It appears that they concentrate in lipid rafts. They have recently been found to be highly important in immunology. Natural and semisynthetic gangliosides are considered possible therapeutics for neurodegenerative disorders. Gangliosides are more complex glycosphingolipids in which oligosaccharide chains containing N-acetylneuraminic acid (NeuNAc) are attached to a ceramide. NeuNAc, an acetylated derivative of the carbohydrate sialic acid, makes the head groups of Gangliosides anionic. NB: the M in GM2 stands for monosialo, i.e., one NeuNAc residue. GM2 is the second monosialo ganglioside characterized, thus the subscript 2. Their structural diversity results from variation in the composition and sequence of the sugar residues. In all Gangliosides, the ceramide is linked through its C-1 to a beta-glucosyl residue, which, in turn, is bound to a beta-galactosyl residue. (Wikipedia) Particularly, Ganglioside GD1b (d18:0/26:1(17Z)) is a GD1b ganglioside, a glycosphingolipid (ceramide and oligosaccharide) or oligoglycosylceramide with one or more sialic acids (i.e. n-acetylneuraminic acid) linked on the sugar chain. It is a component the cell plasma membrane which modulates cell signal transduction events. Gangliosides have been found to be highly important in immunology. Ganglioside GD3 carries a net-negative charge at pH 7.0 and is acidic. Gangliosides can amount to 6% of the weight of lipids from brain, but they are found at low levels in all animal tissues. Gangliosides are glycosphingolipids. There are four types of glycosphingolipids, the cerebrosides, sulfatides, globosides and gangliosides. Gangliosides are very similar to globosides except that they also contain N-acetyl neuraminic acid (NANA) in varying amounts. The specific names for the gangliosides provide information about their structure. The letter G refers to ganglioside, and the subscripts M, D, T and Q indicate that the molecule contains mono-, di-, tri and quatra-sialic acid. The numbered subscripts 1, 2 and 3 refer to the carbohydrate sequence that is attached to the ceramide. In particular, 1 stands for GalGalNAcGalGlc-ceramide, 2 stands for GalNAcGalGlc-ceramide and 3 stands for GalGlc-ceramide. Deficiencies in lysosomal enzymes that degrade the carbohydrate portions of various gangliosides are responsible for a number of lysosomal storage diseases such as Tay-Sachs disease, Sandhoff disease, and GM1 gangliosidosis. The carbohydrate portion of the ganglioside GM1 is the site of attachment of cholera toxin, the protein secreted by Vibrio cholerae. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Structure | MOL for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))
Mrv1652307191923492D
165170 0 0 1 0 999 V2000
-14.1564 3.7851 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-14.2400 4.6059 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-13.5710 5.0886 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-13.6547 5.9094 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-12.9857 6.3922 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-13.0693 7.2129 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-12.4003 7.6957 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-12.4840 8.5165 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.8150 8.9993 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.8986 9.8200 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.2296 10.3028 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.3132 11.1236 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.6443 11.6064 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.7279 12.4271 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.0589 12.9099 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.1425 13.7307 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-10.8951 14.0686 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-9.4735 14.2135 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-9.5572 15.0342 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.3098 15.3722 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-10.3934 16.1929 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-9.7244 16.6757 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-9.8080 17.4965 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-8.9967 17.4812 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.5709 18.1878 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-10.5606 17.8344 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-10.6623 18.6604 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-9.9753 19.1380 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-9.2227 18.8000 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.5537 19.2828 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-7.8866 18.8832 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.2129 18.3144 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.6373 20.1036 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-7.8694 20.3847 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.1861 19.9828 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.4361 20.3266 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.7634 19.8490 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-5.0035 20.2218 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.2345 19.8446 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.8407 19.0276 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-5.1663 18.5290 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-6.5907 18.6838 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.5917 17.8559 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.9953 17.3848 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-5.2287 17.6899 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.5813 17.1785 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-3.8148 17.4835 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.1673 16.9722 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.7004 16.3622 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-4.0530 15.8508 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.4670 16.0571 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-5.5861 15.2408 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-6.1144 16.5685 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-6.8809 16.2635 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.2634 19.1614 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-7.7782 18.3099 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.9517 17.4458 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.3324 16.9007 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.7334 17.1820 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-9.3899 20.4415 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-9.5276 21.2780 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.8046 21.7451 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-8.0108 21.9699 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.8087 22.7698 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.9648 22.8392 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.4003 23.3448 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-7.9148 24.0546 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
-7.2747 24.6080 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.4445 24.6621 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.9881 25.4203 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-9.1941 23.1199 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-9.3962 22.3200 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-9.6485 23.8734 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-9.3272 24.6518 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-10.4870 23.7519 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-10.6838 24.5825 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.7092 25.4191 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-10.8496 22.9358 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-11.5753 22.4453 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-12.2443 21.9625 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-12.9969 22.3004 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-13.5418 21.6345 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-13.0805 23.1212 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-13.9648 23.0183 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
-14.8046 22.9298 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-15.2236 22.1806 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-15.5709 23.3264 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-12.4116 23.6040 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.6590 23.2660 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-12.6459 24.4713 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-12.1192 25.1203 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-13.3336 24.9841 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-14.2041 24.9626 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-13.7084 25.7799 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-14.1442 26.4844 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-11.4628 21.5721 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.7832 21.1431 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-11.8442 20.7905 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.9804 21.3405 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.1553 21.5318 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.7167 20.9660 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-10.0589 19.9587 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-10.9239 19.9402 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-11.2296 17.3516 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
-12.0333 17.5965 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-11.1460 16.5309 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
-11.8150 16.0481 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.7209 13.8755 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
-8.6373 13.0548 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-9.3063 12.5720 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.8847 12.7168 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.8011 11.8961 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.0485 11.5581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.9649 10.7373 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.2123 10.3994 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.1286 9.5786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.3760 9.2407 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.2924 8.4199 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.5398 8.0820 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.4562 7.2612 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.7036 6.9233 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.6200 6.1025 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.8674 5.7646 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.7837 4.9438 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.0311 4.6059 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.9475 3.7851 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.1949 3.4471 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.1113 2.6264 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.3587 2.2884 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
0.3103 2.7712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
1.0629 2.4333 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
1.7319 2.9161 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
2.4845 2.5781 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.1535 3.0609 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.9061 2.7230 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
-10.7225 14.4904 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.9459 14.3689 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.8119 15.6552 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.9222 18.4498 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.4327 17.9527 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-10.4034 18.2964 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4176 19.5485 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.4769 19.9533 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5652 20.8415 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.8313 19.6411 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.8853 18.0817 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1849 19.5092 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.4006 18.1679 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.8869 16.4575 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.2892 15.4320 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1191 15.6202 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.2462 16.7534 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.1914 18.5328 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-10.3645 20.6914 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.2436 23.5744 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.6383 24.3142 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.8499 23.7445 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.3836 23.6139 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-13.6883 22.5491 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-13.7686 23.6052 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.9076 23.9952 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
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-10.6630 19.3325 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-12.1911 16.9186 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.5007 15.6504 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 1 0 0 0 0
3 4 1 0 0 0 0
4 5 1 0 0 0 0
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6 7 1 0 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
9 10 1 0 0 0 0
10 11 1 0 0 0 0
11 12 1 0 0 0 0
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15 16 1 0 0 0 0
16 17 1 1 0 0 0
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19 20 1 0 0 0 0
21 20 1 1 0 0 0
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28 27 1 1 0 0 0
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29 30 1 0 0 0 0
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30 33 1 0 0 0 0
33 34 1 6 0 0 0
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35 36 1 0 0 0 0
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38 39 1 0 0 0 0
37 40 1 0 0 0 0
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42 55 1 0 0 0 0
35 55 1 0 0 0 0
55 56 1 1 0 0 0
56 57 1 0 0 0 0
57 58 1 0 0 0 0
57 59 2 0 0 0 0
33 60 1 0 0 0 0
60 61 1 1 0 0 0
62 61 1 1 0 0 0
62 63 1 0 0 0 0
63 64 1 0 0 0 0
64 65 1 1 0 0 0
64 66 1 0 0 0 0
66 67 1 6 0 0 0
67 68 1 0 0 0 0
68 69 1 0 0 0 0
68 70 2 0 0 0 0
66 71 1 0 0 0 0
71 72 1 0 0 0 0
62 72 1 0 0 0 0
71 73 1 0 0 0 0
73 74 1 1 0 0 0
73 75 1 0 0 0 0
75 76 1 0 0 0 0
76 77 1 0 0 0 0
75 78 1 6 0 0 0
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79 80 1 0 0 0 0
80 81 1 0 0 0 0
81 82 1 6 0 0 0
81 83 1 0 0 0 0
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84 85 1 0 0 0 0
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83 88 1 0 0 0 0
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79 89 1 0 0 0 0
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92 94 1 0 0 0 0
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102163 1 1 0 0 0
104164 1 6 0 0 0
106165 1 1 0 0 0
M END
3D MOL for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))HMDB0011821
RDKit 3D
Ganglioside GD1b (d18:0/26:1(17Z))
300305 0 0 0 0 0 0 0 0999 V2000
-4.9542 0.2493 0.9164 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7418 1.4600 0.0373 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.4381 2.1668 0.4355 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.3123 3.3411 -0.4925 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.0990 4.1839 -0.2846 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.0838 4.7508 1.1125 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.8648 5.6205 1.3503 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.9047 6.1534 2.7583 C 0 0 0 0 0 0 0 0 0 0 0 0
0.2787 7.0255 3.0851 C 0 0 0 0 0 0 0 0 0 0 0 0
1.0763 6.6737 4.0717 C 0 0 0 0 0 0 0 0 0 0 0 0
2.2858 7.3788 4.5521 C 0 0 0 0 0 0 0 0 0 0 0 0
3.5198 6.4788 4.3975 C 0 0 0 0 0 0 0 0 0 0 0 0
3.3427 5.2087 5.1262 C 0 0 0 0 0 0 0 0 0 0 0 0
4.5376 4.2562 4.9344 C 0 0 0 0 0 0 0 0 0 0 0 0
4.1736 2.9580 5.5665 C 0 0 0 0 0 0 0 0 0 0 0 0
5.2257 1.8698 5.3308 C 0 0 0 0 0 0 0 0 0 0 0 0
4.6299 0.5892 5.7969 C 0 0 0 0 0 0 0 0 0 0 0 0
5.5192 -0.6210 5.4460 C 0 0 0 0 0 0 0 0 0 0 0 0
4.6153 -1.8178 5.7178 C 0 0 0 0 0 0 0 0 0 0 0 0
5.1705 -3.1148 5.2608 C 0 0 0 0 0 0 0 0 0 0 0 0
4.0561 -4.1566 5.3840 C 0 0 0 0 0 0 0 0 0 0 0 0
3.6179 -4.6057 6.7118 C 0 0 0 0 0 0 0 0 0 0 0 0
2.1025 -5.0981 6.4122 C 0 0 0 0 0 0 0 0 0 0 0 0
1.4459 -3.8024 6.2992 C 0 0 0 0 0 0 0 0 0 0 0 0
0.0151 -3.6236 5.8837 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.1564 -2.1452 6.0808 C 0 0 0 0 0 0 0 0 0 0 0 0
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M END
3D SDF for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))
Mrv1652307191923492D
165170 0 0 1 0 999 V2000
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M END
> <DATABASE_ID>
HMDB0011821
> <DATABASE_NAME>
hmdb
> <SMILES>
[H][C@@](O)(CO)[C@@]([H])(O)C1O[C@@](C[C@]([H])(O)[C@@]1([H])NC(C)=O)(O[C@]([H])(CO)[C@@]([H])(O)C1O[C@@](C[C@]([H])(O)[C@@]1([H])NC(C)=O)(O[C@]1([H])[C@@]([H])(O)[C@]([H])(O[C@]2([H])[C@@]([H])(CO)O[C@@]([H])(OC[C@]([H])(NC(=O)CCCCCCCCCCCCCCCC=CCCCCCCCC)[C@]([H])(O)CCCCCCCCCCCCCCC)[C@]([H])(O)[C@@]2([H])O)O[C@]([H])(CO)[C@]1([H])O[C@]1([H])O[C@]([H])(CO)[C@]([H])(O)[C@]([H])(O[C@]2([H])O[C@]([H])(CO)[C@]([H])(O)[C@]([H])(O)[C@@]2([H])O)[C@@]1([H])CC(C)=O)C(O)=O)C(O)=O
> <INCHI_IDENTIFIER>
InChI=1S/C93H165N3O39/c1-6-8-10-12-14-16-18-20-21-22-23-24-25-26-27-28-29-31-33-35-37-39-41-43-68(110)96-58(59(106)42-40-38-36-34-32-30-19-17-15-13-11-9-7-2)53-124-87-78(118)76(116)81(66(51-101)127-87)130-89-79(119)85(82(67(52-102)128-89)131-86-57(44-54(3)103)80(73(113)64(49-99)125-86)129-88-77(117)75(115)72(112)63(48-98)126-88)135-93(91(122)123)46-61(108)70(95-56(5)105)84(134-93)74(114)65(50-100)132-92(90(120)121)45-60(107)69(94-55(4)104)83(133-92)71(111)62(109)47-97/h20-21,57-67,69-89,97-102,106-109,111-119H,6-19,22-53H2,1-5H3,(H,94,104)(H,95,105)(H,96,110)(H,120,121)(H,122,123)/t57-,58+,59-,60+,61+,62-,63-,64-,65-,66-,67-,69-,70-,71-,72+,73+,74-,75+,76-,77-,78-,79-,80-,81-,82+,83?,84?,85-,86+,87-,88+,89+,92-,93+/m1/s1
> <INCHI_KEY>
UAKVFUWDGIZDMA-KDUBURPXSA-N
> <FORMULA>
C93H165N3O39
> <MOLECULAR_WEIGHT>
1949.3019
> <EXACT_MASS>
1948.102022553
> <JCHEM_ACCEPTOR_COUNT>
39
> <JCHEM_ATOM_COUNT>
300
> <JCHEM_AVERAGE_POLARIZABILITY>
211.52032290139314
> <JCHEM_BIOAVAILABILITY>
0
> <JCHEM_DONOR_COUNT>
24
> <JCHEM_FORMAL_CHARGE>
0
> <JCHEM_GHOSE_FILTER>
0
> <JCHEM_IUPAC>
(2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-5-acetamido-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-6-{[(2S,3R)-2-(hexacos-17-enamido)-3-hydroxyoctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxyoxane-2-carboxylic acid
> <ALOGPS_LOGP>
2.28
> <JCHEM_LOGP>
3.9960662116666716
> <ALOGPS_LOGS>
-4.29
> <JCHEM_MDDR_LIKE_RULE>
1
> <JCHEM_NUMBER_OF_RINGS>
6
> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2
> <JCHEM_PKA>
3.1250382090686446
> <JCHEM_PKA_STRONGEST_ACIDIC>
2.4576634471943666
> <JCHEM_PKA_STRONGEST_BASIC>
-3.685478686053642
> <JCHEM_POLAR_SURFACE_AREA>
674.1000000000003
> <JCHEM_REFRACTIVITY>
475.0654999999999
> <JCHEM_ROTATABLE_BOND_COUNT>
68
> <JCHEM_RULE_OF_FIVE>
0
> <ALOGPS_SOLUBILITY>
9.91e-02 g/l
> <JCHEM_TRADITIONAL_IUPAC>
(2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-5-acetamido-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-6-{[(2S,3R)-2-(hexacos-17-enamido)-3-hydroxyoctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxyoxane-2-carboxylic acid
> <JCHEM_VEBER_RULE>
0
$$$$
3D-SDF for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))HMDB0011821
RDKit 3D
Ganglioside GD1b (d18:0/26:1(17Z))
300305 0 0 0 0 0 0 0 0999 V2000
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6.7126 -4.9594 -0.2335 H 0 0 0 0 0 0 0 0 0 0 0 0
6.9157 -2.9048 0.1885 H 0 0 0 0 0 0 0 0 0 0 0 0
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3.1491 -3.8318 -0.0950 H 0 0 0 0 0 0 0 0 0 0 0 0
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1.6620 -2.8351 -1.4978 H 0 0 0 0 0 0 0 0 0 0 0 0
1.8637 -0.4046 -2.8122 H 0 0 0 0 0 0 0 0 0 0 0 0
0.0947 1.4501 0.2581 H 0 0 0 0 0 0 0 0 0 0 0 0
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135299 1 0
135300 1 0
M END
PDB for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))HEADER PROTEIN 19-JUL-19 NONE TITLE NULL COMPND NULL SOURCE NULL KEYWDS NULL EXPDTA NULL AUTHOR Marvin REVDAT 1 19-JUL-19 0 HETATM 1 C UNK 0 -26.425 7.066 0.000 0.00 0.00 C+0 HETATM 2 C UNK 0 -26.581 8.598 0.000 0.00 0.00 C+0 HETATM 3 C UNK 0 -25.333 9.499 0.000 0.00 0.00 C+0 HETATM 4 C UNK 0 -25.489 11.031 0.000 0.00 0.00 C+0 HETATM 5 C UNK 0 -24.240 11.932 0.000 0.00 0.00 C+0 HETATM 6 C UNK 0 -24.396 13.464 0.000 0.00 0.00 C+0 HETATM 7 C UNK 0 -23.147 14.365 0.000 0.00 0.00 C+0 HETATM 8 C UNK 0 -23.303 15.897 0.000 0.00 0.00 C+0 HETATM 9 C UNK 0 -22.055 16.799 0.000 0.00 0.00 C+0 HETATM 10 C UNK 0 -22.211 18.331 0.000 0.00 0.00 C+0 HETATM 11 C UNK 0 -20.962 19.232 0.000 0.00 0.00 C+0 HETATM 12 C UNK 0 -21.118 20.764 0.000 0.00 0.00 C+0 HETATM 13 C UNK 0 -19.869 21.665 0.000 0.00 0.00 C+0 HETATM 14 C UNK 0 -20.025 23.197 0.000 0.00 0.00 C+0 HETATM 15 C UNK 0 -18.777 24.098 0.000 0.00 0.00 C+0 HETATM 16 C UNK 0 -18.933 25.631 0.000 0.00 0.00 C+0 HETATM 17 O UNK 0 -20.338 26.261 0.000 0.00 0.00 O+0 HETATM 18 C UNK 0 -17.684 26.532 0.000 0.00 0.00 C+0 HETATM 19 C UNK 0 -17.840 28.064 0.000 0.00 0.00 C+0 HETATM 20 O UNK 0 -19.245 28.695 0.000 0.00 0.00 O+0 HETATM 21 C UNK 0 -19.401 30.227 0.000 0.00 0.00 C+0 HETATM 22 O UNK 0 -18.152 31.128 0.000 0.00 0.00 O+0 HETATM 23 C UNK 0 -18.308 32.660 0.000 0.00 0.00 C+0 HETATM 24 C UNK 0 -16.794 32.632 0.000 0.00 0.00 C+0 HETATM 25 O UNK 0 -15.999 33.951 0.000 0.00 0.00 O+0 HETATM 26 C UNK 0 -19.713 33.291 0.000 0.00 0.00 C+0 HETATM 27 O UNK 0 -19.903 34.833 0.000 0.00 0.00 O+0 HETATM 28 C UNK 0 -18.621 35.724 0.000 0.00 0.00 C+0 HETATM 29 O UNK 0 -17.216 35.093 0.000 0.00 0.00 O+0 HETATM 30 C UNK 0 -15.967 35.995 0.000 0.00 0.00 C+0 HETATM 31 C UNK 0 -14.722 35.249 0.000 0.00 0.00 C+0 HETATM 32 O UNK 0 -13.464 34.187 0.000 0.00 0.00 O+0 HETATM 33 C UNK 0 -16.123 37.527 0.000 0.00 0.00 C+0 HETATM 34 O UNK 0 -14.690 38.051 0.000 0.00 0.00 O+0 HETATM 35 C UNK 0 -13.414 37.301 0.000 0.00 0.00 C+0 HETATM 36 O UNK 0 -12.014 37.943 0.000 0.00 0.00 O+0 HETATM 37 C UNK 0 -10.758 37.051 0.000 0.00 0.00 C+0 HETATM 38 C UNK 0 -9.340 37.747 0.000 0.00 0.00 C+0 HETATM 39 O UNK 0 -7.904 37.043 0.000 0.00 0.00 O+0 HETATM 40 C UNK 0 -10.903 35.518 0.000 0.00 0.00 C+0 HETATM 41 O UNK 0 -9.644 34.587 0.000 0.00 0.00 O+0 HETATM 42 C UNK 0 -12.303 34.876 0.000 0.00 0.00 C+0 HETATM 43 O UNK 0 -12.305 33.331 0.000 0.00 0.00 O+0 HETATM 44 C UNK 0 -11.191 32.452 0.000 0.00 0.00 C+0 HETATM 45 O UNK 0 -9.760 33.021 0.000 0.00 0.00 O+0 HETATM 46 C UNK 0 -8.552 32.067 0.000 0.00 0.00 C+0 HETATM 47 C UNK 0 -7.121 32.636 0.000 0.00 0.00 C+0 HETATM 48 O UNK 0 -5.912 31.681 0.000 0.00 0.00 O+0 HETATM 49 C UNK 0 -8.774 30.543 0.000 0.00 0.00 C+0 HETATM 50 O UNK 0 -7.566 29.588 0.000 0.00 0.00 O+0 HETATM 51 C UNK 0 -10.205 29.973 0.000 0.00 0.00 C+0 HETATM 52 O UNK 0 -10.427 28.449 0.000 0.00 0.00 O+0 HETATM 53 C UNK 0 -11.414 30.928 0.000 0.00 0.00 C+0 HETATM 54 O UNK 0 -12.844 30.359 0.000 0.00 0.00 O+0 HETATM 55 C UNK 0 -13.558 35.768 0.000 0.00 0.00 C+0 HETATM 56 C UNK 0 -14.519 34.178 0.000 0.00 0.00 C+0 HETATM 57 C UNK 0 -14.843 32.565 0.000 0.00 0.00 C+0 HETATM 58 C UNK 0 -13.687 31.548 0.000 0.00 0.00 C+0 HETATM 59 O UNK 0 -16.302 32.073 0.000 0.00 0.00 O+0 HETATM 60 C UNK 0 -17.528 38.157 0.000 0.00 0.00 C+0 HETATM 61 O UNK 0 -17.785 39.719 0.000 0.00 0.00 O+0 HETATM 62 C UNK 0 -16.435 40.591 0.000 0.00 0.00 C+0 HETATM 63 C UNK 0 -14.953 41.010 0.000 0.00 0.00 C+0 HETATM 64 C UNK 0 -14.576 42.504 0.000 0.00 0.00 C+0 HETATM 65 O UNK 0 -13.001 42.633 0.000 0.00 0.00 O+0 HETATM 66 C UNK 0 -15.681 43.577 0.000 0.00 0.00 C+0 HETATM 67 N UNK 0 -14.774 44.902 0.000 0.00 0.00 N+0 HETATM 68 C UNK 0 -13.579 45.935 0.000 0.00 0.00 C+0 HETATM 69 C UNK 0 -12.030 46.036 0.000 0.00 0.00 C+0 HETATM 70 O UNK 0 -13.044 47.451 0.000 0.00 0.00 O+0 HETATM 71 C UNK 0 -17.162 43.157 0.000 0.00 0.00 C+0 HETATM 72 O UNK 0 -17.540 41.664 0.000 0.00 0.00 O+0 HETATM 73 C UNK 0 -18.011 44.564 0.000 0.00 0.00 C+0 HETATM 74 O UNK 0 -17.411 46.017 0.000 0.00 0.00 O+0 HETATM 75 C UNK 0 -19.576 44.337 0.000 0.00 0.00 C+0 HETATM 76 C UNK 0 -19.943 45.887 0.000 0.00 0.00 C+0 HETATM 77 O UNK 0 -19.991 47.449 0.000 0.00 0.00 O+0 HETATM 78 O UNK 0 -20.253 42.813 0.000 0.00 0.00 O+0 HETATM 79 C UNK 0 -21.607 41.898 0.000 0.00 0.00 C+0 HETATM 80 C UNK 0 -22.856 40.997 0.000 0.00 0.00 C+0 HETATM 81 C UNK 0 -24.261 41.627 0.000 0.00 0.00 C+0 HETATM 82 O UNK 0 -25.278 40.384 0.000 0.00 0.00 O+0 HETATM 83 C UNK 0 -24.417 43.160 0.000 0.00 0.00 C+0 HETATM 84 N UNK 0 -26.068 42.967 0.000 0.00 0.00 N+0 HETATM 85 C UNK 0 -27.635 42.802 0.000 0.00 0.00 C+0 HETATM 86 C UNK 0 -28.417 41.404 0.000 0.00 0.00 C+0 HETATM 87 O UNK 0 -29.066 43.543 0.000 0.00 0.00 O+0 HETATM 88 C UNK 0 -23.168 44.061 0.000 0.00 0.00 C+0 HETATM 89 O UNK 0 -21.763 43.430 0.000 0.00 0.00 O+0 HETATM 90 C UNK 0 -23.606 45.680 0.000 0.00 0.00 C+0 HETATM 91 O UNK 0 -22.623 46.891 0.000 0.00 0.00 O+0 HETATM 92 C UNK 0 -24.889 46.637 0.000 0.00 0.00 C+0 HETATM 93 O UNK 0 -26.514 46.597 0.000 0.00 0.00 O+0 HETATM 94 C UNK 0 -25.589 48.122 0.000 0.00 0.00 C+0 HETATM 95 O UNK 0 -26.403 49.438 0.000 0.00 0.00 O+0 HETATM 96 C UNK 0 -21.397 40.268 0.000 0.00 0.00 C+0 HETATM 97 O UNK 0 -20.129 39.467 0.000 0.00 0.00 O+0 HETATM 98 O UNK 0 -22.109 38.809 0.000 0.00 0.00 O+0 HETATM 99 C UNK 0 -14.897 39.836 0.000 0.00 0.00 C+0 HETATM 100 O UNK 0 -13.357 40.193 0.000 0.00 0.00 O+0 HETATM 101 O UNK 0 -16.271 39.137 0.000 0.00 0.00 O+0 HETATM 102 C UNK 0 -18.777 37.256 0.000 0.00 0.00 C+0 HETATM 103 O UNK 0 -20.391 37.222 0.000 0.00 0.00 O+0 HETATM 104 C UNK 0 -20.962 32.390 0.000 0.00 0.00 C+0 HETATM 105 O UNK 0 -22.462 32.847 0.000 0.00 0.00 O+0 HETATM 106 C UNK 0 -20.806 30.858 0.000 0.00 0.00 C+0 HETATM 107 O UNK 0 -22.055 29.956 0.000 0.00 0.00 O+0 HETATM 108 N UNK 0 -16.279 25.901 0.000 0.00 0.00 N+0 HETATM 109 C UNK 0 -16.123 24.369 0.000 0.00 0.00 C+0 HETATM 110 O UNK 0 -17.372 23.468 0.000 0.00 0.00 O+0 HETATM 111 C UNK 0 -14.718 23.738 0.000 0.00 0.00 C+0 HETATM 112 C UNK 0 -14.562 22.206 0.000 0.00 0.00 C+0 HETATM 113 C UNK 0 -13.157 21.575 0.000 0.00 0.00 C+0 HETATM 114 C UNK 0 -13.001 20.043 0.000 0.00 0.00 C+0 HETATM 115 C UNK 0 -11.596 19.412 0.000 0.00 0.00 C+0 HETATM 116 C UNK 0 -11.440 17.880 0.000 0.00 0.00 C+0 HETATM 117 C UNK 0 -10.035 17.249 0.000 0.00 0.00 C+0 HETATM 118 C UNK 0 -9.879 15.717 0.000 0.00 0.00 C+0 HETATM 119 C UNK 0 -8.474 15.086 0.000 0.00 0.00 C+0 HETATM 120 C UNK 0 -8.318 13.554 0.000 0.00 0.00 C+0 HETATM 121 C UNK 0 -6.913 12.923 0.000 0.00 0.00 C+0 HETATM 122 C UNK 0 -6.757 11.391 0.000 0.00 0.00 C+0 HETATM 123 C UNK 0 -5.352 10.761 0.000 0.00 0.00 C+0 HETATM 124 C UNK 0 -5.196 9.228 0.000 0.00 0.00 C+0 HETATM 125 C UNK 0 -3.791 8.598 0.000 0.00 0.00 C+0 HETATM 126 C UNK 0 -3.635 7.066 0.000 0.00 0.00 C+0 HETATM 127 C UNK 0 -2.230 6.435 0.000 0.00 0.00 C+0 HETATM 128 C UNK 0 -2.074 4.903 0.000 0.00 0.00 C+0 HETATM 129 C UNK 0 -0.670 4.272 0.000 0.00 0.00 C+0 HETATM 130 C UNK 0 0.579 5.173 0.000 0.00 0.00 C+0 HETATM 131 C UNK 0 1.984 4.542 0.000 0.00 0.00 C+0 HETATM 132 C UNK 0 3.233 5.443 0.000 0.00 0.00 C+0 HETATM 133 C UNK 0 4.638 4.812 0.000 0.00 0.00 C+0 HETATM 134 C UNK 0 5.887 5.714 0.000 0.00 0.00 C+0 HETATM 135 C UNK 0 7.291 5.083 0.000 0.00 0.00 C+0 HETATM 136 H UNK 0 -20.015 27.049 0.000 0.00 0.00 H+0 HETATM 137 H UNK 0 -16.699 26.822 0.000 0.00 0.00 H+0 HETATM 138 H UNK 0 -18.316 29.223 0.000 0.00 0.00 H+0 HETATM 139 H UNK 0 -18.521 34.440 0.000 0.00 0.00 H+0 HETATM 140 H UNK 0 -21.341 33.512 0.000 0.00 0.00 H+0 HETATM 141 H UNK 0 -19.420 34.153 0.000 0.00 0.00 H+0 HETATM 142 H UNK 0 -13.846 36.491 0.000 0.00 0.00 H+0 HETATM 143 H UNK 0 -17.690 37.246 0.000 0.00 0.00 H+0 HETATM 144 H UNK 0 -12.255 38.904 0.000 0.00 0.00 H+0 HETATM 145 H UNK 0 -9.018 36.663 0.000 0.00 0.00 H+0 HETATM 146 H UNK 0 -10.986 33.753 0.000 0.00 0.00 H+0 HETATM 147 H UNK 0 -11.545 36.417 0.000 0.00 0.00 H+0 HETATM 148 H UNK 0 -10.081 33.913 0.000 0.00 0.00 H+0 HETATM 149 H UNK 0 -7.256 30.721 0.000 0.00 0.00 H+0 HETATM 150 H UNK 0 -8.007 28.806 0.000 0.00 0.00 H+0 HETATM 151 H UNK 0 -11.422 29.158 0.000 0.00 0.00 H+0 HETATM 152 H UNK 0 -9.793 31.273 0.000 0.00 0.00 H+0 HETATM 153 H UNK 0 -15.291 34.595 0.000 0.00 0.00 H+0 HETATM 154 H UNK 0 -19.347 38.624 0.000 0.00 0.00 H+0 HETATM 155 H UNK 0 -13.521 44.006 0.000 0.00 0.00 H+0 HETATM 156 H UNK 0 -16.125 45.387 0.000 0.00 0.00 H+0 HETATM 157 H UNK 0 -16.520 44.323 0.000 0.00 0.00 H+0 HETATM 158 H UNK 0 -21.249 44.079 0.000 0.00 0.00 H+0 HETATM 159 H UNK 0 -25.551 42.092 0.000 0.00 0.00 H+0 HETATM 160 H UNK 0 -25.701 44.063 0.000 0.00 0.00 H+0 HETATM 161 H UNK 0 -22.228 44.791 0.000 0.00 0.00 H+0 HETATM 162 H UNK 0 -26.075 45.514 0.000 0.00 0.00 H+0 HETATM 163 H UNK 0 -19.904 36.087 0.000 0.00 0.00 H+0 HETATM 164 H UNK 0 -22.757 31.581 0.000 0.00 0.00 H+0 HETATM 165 H UNK 0 -21.468 29.214 0.000 0.00 0.00 H+0 CONECT 1 2 CONECT 2 1 3 CONECT 3 2 4 CONECT 4 3 5 CONECT 5 4 6 CONECT 6 5 7 CONECT 7 6 8 CONECT 8 7 9 CONECT 9 8 10 CONECT 10 9 11 CONECT 11 10 12 CONECT 12 11 13 CONECT 13 12 14 CONECT 14 13 15 CONECT 15 14 16 CONECT 16 15 17 18 136 CONECT 17 16 CONECT 18 16 19 108 137 CONECT 19 18 20 CONECT 20 19 21 CONECT 21 20 22 106 138 CONECT 22 21 23 CONECT 23 22 24 26 139 CONECT 24 23 25 CONECT 25 24 CONECT 26 23 27 104 140 CONECT 27 26 28 CONECT 28 27 29 102 141 CONECT 29 28 30 CONECT 30 29 31 33 142 CONECT 31 30 32 CONECT 32 31 CONECT 33 30 34 60 143 CONECT 34 33 35 CONECT 35 34 36 55 144 CONECT 36 35 37 CONECT 37 36 38 40 145 CONECT 38 37 39 CONECT 39 38 CONECT 40 37 41 42 146 CONECT 41 40 CONECT 42 40 43 55 147 CONECT 43 42 44 CONECT 44 43 45 53 148 CONECT 45 44 46 CONECT 46 45 47 49 149 CONECT 47 46 48 CONECT 48 47 CONECT 49 46 50 51 150 CONECT 50 49 CONECT 51 49 52 53 151 CONECT 52 51 CONECT 53 51 44 54 152 CONECT 54 53 CONECT 55 42 35 56 153 CONECT 56 55 57 CONECT 57 56 58 59 CONECT 58 57 CONECT 59 57 CONECT 60 33 61 102 154 CONECT 61 60 62 CONECT 62 61 63 72 99 CONECT 63 62 64 CONECT 64 63 65 66 155 CONECT 65 64 CONECT 66 64 67 71 156 CONECT 67 66 68 CONECT 68 67 69 70 CONECT 69 68 CONECT 70 68 CONECT 71 66 72 73 CONECT 72 71 62 CONECT 73 71 74 75 157 CONECT 74 73 CONECT 75 73 76 78 158 CONECT 76 75 77 CONECT 77 76 CONECT 78 75 79 CONECT 79 78 80 89 96 CONECT 80 79 81 CONECT 81 80 82 83 159 CONECT 82 81 CONECT 83 81 84 88 160 CONECT 84 83 85 CONECT 85 84 86 87 CONECT 86 85 CONECT 87 85 CONECT 88 83 89 90 CONECT 89 88 79 CONECT 90 88 91 92 161 CONECT 91 90 CONECT 92 90 93 94 162 CONECT 93 92 CONECT 94 92 95 CONECT 95 94 CONECT 96 79 97 98 CONECT 97 96 CONECT 98 96 CONECT 99 62 100 101 CONECT 100 99 CONECT 101 99 CONECT 102 60 28 103 163 CONECT 103 102 CONECT 104 26 105 106 164 CONECT 105 104 CONECT 106 104 21 107 165 CONECT 107 106 CONECT 108 18 109 CONECT 109 108 110 111 CONECT 110 109 CONECT 111 109 112 CONECT 112 111 113 CONECT 113 112 114 CONECT 114 113 115 CONECT 115 114 116 CONECT 116 115 117 CONECT 117 116 118 CONECT 118 117 119 CONECT 119 118 120 CONECT 120 119 121 CONECT 121 120 122 CONECT 122 121 123 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 126 CONECT 126 125 127 CONECT 127 126 128 CONECT 128 127 129 CONECT 129 128 130 CONECT 130 129 131 CONECT 131 130 132 CONECT 132 131 133 CONECT 133 132 134 CONECT 134 133 135 CONECT 135 134 CONECT 136 16 CONECT 137 18 CONECT 138 21 CONECT 139 23 CONECT 140 26 CONECT 141 28 CONECT 142 30 CONECT 143 33 CONECT 144 35 CONECT 145 37 CONECT 146 40 CONECT 147 42 CONECT 148 44 CONECT 149 46 CONECT 150 49 CONECT 151 51 CONECT 152 53 CONECT 153 55 CONECT 154 60 CONECT 155 64 CONECT 156 66 CONECT 157 73 CONECT 158 75 CONECT 159 81 CONECT 160 83 CONECT 161 90 CONECT 162 92 CONECT 163 102 CONECT 164 104 CONECT 165 106 MASTER 0 0 0 0 0 0 0 0 165 0 340 0 END 3D PDB for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))COMPND HMDB0011821 HETATM 1 C1 UNL 1 -4.954 0.249 0.916 1.00 0.00 C HETATM 2 C2 UNL 1 -4.742 1.460 0.037 1.00 0.00 C HETATM 3 C3 UNL 1 -3.438 2.167 0.436 1.00 0.00 C HETATM 4 C4 UNL 1 -3.312 3.341 -0.493 1.00 0.00 C HETATM 5 C5 UNL 1 -2.099 4.184 -0.285 1.00 0.00 C HETATM 6 C6 UNL 1 -2.084 4.751 1.112 1.00 0.00 C HETATM 7 C7 UNL 1 -0.865 5.620 1.350 1.00 0.00 C HETATM 8 C8 UNL 1 -0.905 6.153 2.758 1.00 0.00 C HETATM 9 C9 UNL 1 0.279 7.026 3.085 1.00 0.00 C HETATM 10 C10 UNL 1 1.076 6.674 4.072 1.00 0.00 C HETATM 11 C11 UNL 1 2.286 7.379 4.552 1.00 0.00 C HETATM 12 C12 UNL 1 3.520 6.479 4.397 1.00 0.00 C HETATM 13 C13 UNL 1 3.343 5.209 5.126 1.00 0.00 C HETATM 14 C14 UNL 1 4.538 4.256 4.934 1.00 0.00 C HETATM 15 C15 UNL 1 4.174 2.958 5.567 1.00 0.00 C HETATM 16 C16 UNL 1 5.226 1.870 5.331 1.00 0.00 C HETATM 17 C17 UNL 1 4.630 0.589 5.797 1.00 0.00 C HETATM 18 C18 UNL 1 5.519 -0.621 5.446 1.00 0.00 C HETATM 19 C19 UNL 1 4.615 -1.818 5.718 1.00 0.00 C HETATM 20 C20 UNL 1 5.171 -3.115 5.261 1.00 0.00 C HETATM 21 C21 UNL 1 4.056 -4.157 5.384 1.00 0.00 C HETATM 22 C22 UNL 1 3.618 -4.606 6.712 1.00 0.00 C HETATM 23 C23 UNL 1 2.103 -5.098 6.412 1.00 0.00 C HETATM 24 C24 UNL 1 1.446 -3.802 6.299 1.00 0.00 C HETATM 25 C25 UNL 1 0.015 -3.624 5.884 1.00 0.00 C HETATM 26 C26 UNL 1 -0.156 -2.145 6.081 1.00 0.00 C HETATM 27 O1 UNL 1 0.527 -1.640 7.058 1.00 0.00 O HETATM 28 N1 UNL 1 -0.933 -1.252 5.356 1.00 0.00 N HETATM 29 C27 UNL 1 -0.857 0.168 5.801 1.00 0.00 C HETATM 30 C28 UNL 1 0.461 0.757 5.456 1.00 0.00 C HETATM 31 O2 UNL 1 0.962 0.946 4.257 1.00 0.00 O HETATM 32 C29 UNL 1 0.986 0.020 3.253 1.00 0.00 C HETATM 33 O3 UNL 1 2.260 -0.038 2.705 1.00 0.00 O HETATM 34 C30 UNL 1 2.421 -0.652 1.490 1.00 0.00 C HETATM 35 C31 UNL 1 3.881 -0.708 1.082 1.00 0.00 C HETATM 36 O4 UNL 1 3.996 -1.306 -0.138 1.00 0.00 O HETATM 37 C32 UNL 1 1.537 -0.217 0.390 1.00 0.00 C HETATM 38 O5 UNL 1 0.719 -1.212 -0.015 1.00 0.00 O HETATM 39 C33 UNL 1 0.247 -1.279 -1.265 1.00 0.00 C HETATM 40 O6 UNL 1 -1.022 -1.686 -1.287 1.00 0.00 O HETATM 41 C34 UNL 1 -1.346 -3.026 -1.437 1.00 0.00 C HETATM 42 C35 UNL 1 -1.533 -3.583 -0.009 1.00 0.00 C HETATM 43 O7 UNL 1 -0.338 -3.450 0.687 1.00 0.00 O HETATM 44 C36 UNL 1 -0.453 -3.861 -2.219 1.00 0.00 C HETATM 45 O8 UNL 1 0.558 -4.408 -1.408 1.00 0.00 O HETATM 46 C37 UNL 1 1.380 -5.252 -1.972 1.00 0.00 C HETATM 47 O9 UNL 1 0.811 -6.586 -2.205 1.00 0.00 O HETATM 48 C38 UNL 1 1.706 -7.183 -3.110 1.00 0.00 C HETATM 49 C39 UNL 1 1.757 -8.647 -2.779 1.00 0.00 C HETATM 50 O10 UNL 1 0.476 -9.224 -2.912 1.00 0.00 O HETATM 51 C40 UNL 1 3.005 -6.570 -3.372 1.00 0.00 C HETATM 52 O11 UNL 1 3.952 -7.606 -3.543 1.00 0.00 O HETATM 53 C41 UNL 1 3.616 -5.640 -2.362 1.00 0.00 C HETATM 54 O12 UNL 1 4.919 -5.774 -2.110 1.00 0.00 O HETATM 55 C42 UNL 1 5.672 -4.634 -2.153 1.00 0.00 C HETATM 56 O13 UNL 1 6.192 -4.459 -3.482 1.00 0.00 O HETATM 57 C43 UNL 1 6.798 -3.187 -3.514 1.00 0.00 C HETATM 58 C44 UNL 1 6.721 -2.616 -4.867 1.00 0.00 C HETATM 59 O14 UNL 1 5.340 -2.504 -5.178 1.00 0.00 O HETATM 60 C45 UNL 1 8.102 -3.186 -2.802 1.00 0.00 C HETATM 61 O15 UNL 1 9.122 -3.347 -3.715 1.00 0.00 O HETATM 62 C46 UNL 1 8.096 -4.300 -1.761 1.00 0.00 C HETATM 63 O16 UNL 1 8.472 -5.497 -2.335 1.00 0.00 O HETATM 64 C47 UNL 1 6.695 -4.364 -1.143 1.00 0.00 C HETATM 65 O17 UNL 1 6.491 -3.027 -0.693 1.00 0.00 O HETATM 66 C48 UNL 1 2.600 -5.651 -1.209 1.00 0.00 C HETATM 67 C49 UNL 1 2.965 -4.903 -0.010 1.00 0.00 C HETATM 68 C50 UNL 1 4.151 -5.578 0.638 1.00 0.00 C HETATM 69 C51 UNL 1 4.792 -4.944 1.815 1.00 0.00 C HETATM 70 O18 UNL 1 4.609 -6.625 0.241 1.00 0.00 O HETATM 71 C52 UNL 1 0.256 -2.749 -3.169 1.00 0.00 C HETATM 72 O19 UNL 1 0.604 -3.301 -4.294 1.00 0.00 O HETATM 73 C53 UNL 1 0.097 -2.871 -5.516 1.00 0.00 C HETATM 74 C54 UNL 1 -1.412 -2.777 -5.518 1.00 0.00 C HETATM 75 O20 UNL 1 -2.130 -3.055 -4.566 1.00 0.00 O HETATM 76 O21 UNL 1 -2.013 -2.339 -6.690 1.00 0.00 O HETATM 77 C55 UNL 1 0.410 -3.889 -6.558 1.00 0.00 C HETATM 78 C56 UNL 1 1.304 -3.520 -7.669 1.00 0.00 C HETATM 79 O22 UNL 1 2.184 -4.547 -8.031 1.00 0.00 O HETATM 80 C57 UNL 1 2.019 -2.206 -7.406 1.00 0.00 C HETATM 81 N2 UNL 1 2.626 -1.766 -8.671 1.00 0.00 N HETATM 82 C58 UNL 1 3.964 -2.085 -8.958 1.00 0.00 C HETATM 83 C59 UNL 1 4.579 -1.633 -10.224 1.00 0.00 C HETATM 84 O23 UNL 1 4.616 -2.761 -8.111 1.00 0.00 O HETATM 85 C60 UNL 1 1.014 -1.223 -6.910 1.00 0.00 C HETATM 86 C61 UNL 1 1.750 0.126 -6.724 1.00 0.00 C HETATM 87 O24 UNL 1 2.647 -0.135 -5.706 1.00 0.00 O HETATM 88 C62 UNL 1 0.837 1.261 -6.591 1.00 0.00 C HETATM 89 C63 UNL 1 0.079 1.382 -7.951 1.00 0.00 C HETATM 90 O25 UNL 1 0.998 1.382 -8.965 1.00 0.00 O HETATM 91 O26 UNL 1 -0.068 1.235 -5.584 1.00 0.00 O HETATM 92 C64 UNL 1 -0.233 2.457 -4.892 1.00 0.00 C HETATM 93 C65 UNL 1 0.903 2.883 -4.109 1.00 0.00 C HETATM 94 O27 UNL 1 0.892 3.975 -3.452 1.00 0.00 O HETATM 95 O28 UNL 1 2.123 2.189 -3.965 1.00 0.00 O HETATM 96 C66 UNL 1 -1.493 2.194 -4.036 1.00 0.00 C HETATM 97 C67 UNL 1 -2.703 2.349 -4.935 1.00 0.00 C HETATM 98 O29 UNL 1 -2.581 1.699 -6.134 1.00 0.00 O HETATM 99 C68 UNL 1 -2.818 3.882 -5.199 1.00 0.00 C HETATM 100 N3 UNL 1 -3.698 4.346 -4.175 1.00 0.00 N HETATM 101 C69 UNL 1 -5.095 4.570 -4.383 1.00 0.00 C HETATM 102 C70 UNL 1 -5.987 5.040 -3.303 1.00 0.00 C HETATM 103 O30 UNL 1 -5.542 4.350 -5.530 1.00 0.00 O HETATM 104 C71 UNL 1 -1.415 4.418 -5.149 1.00 0.00 C HETATM 105 C72 UNL 1 -1.220 5.714 -5.927 1.00 0.00 C HETATM 106 O31 UNL 1 0.238 5.842 -5.975 1.00 0.00 O HETATM 107 C73 UNL 1 -1.649 6.944 -5.212 1.00 0.00 C HETATM 108 O32 UNL 1 -1.187 7.038 -3.894 1.00 0.00 O HETATM 109 C74 UNL 1 -3.076 7.361 -5.276 1.00 0.00 C HETATM 110 O33 UNL 1 -3.644 7.233 -6.541 1.00 0.00 O HETATM 111 O34 UNL 1 -0.635 3.433 -5.791 1.00 0.00 O HETATM 112 O35 UNL 1 0.514 -1.578 -5.702 1.00 0.00 O HETATM 113 C75 UNL 1 1.167 -2.140 -2.164 1.00 0.00 C HETATM 114 O36 UNL 1 2.107 -1.363 -2.815 1.00 0.00 O HETATM 115 C76 UNL 1 0.710 0.957 1.004 1.00 0.00 C HETATM 116 O37 UNL 1 1.689 1.854 1.426 1.00 0.00 O HETATM 117 C77 UNL 1 -0.041 0.497 2.211 1.00 0.00 C HETATM 118 O38 UNL 1 -0.829 -0.587 1.892 1.00 0.00 O HETATM 119 C78 UNL 1 -2.067 0.968 5.568 1.00 0.00 C HETATM 120 O39 UNL 1 -2.518 1.187 4.318 1.00 0.00 O HETATM 121 C79 UNL 1 -2.213 2.104 6.523 1.00 0.00 C HETATM 122 C80 UNL 1 -3.346 3.043 6.323 1.00 0.00 C HETATM 123 C81 UNL 1 -3.197 3.896 5.093 1.00 0.00 C HETATM 124 C82 UNL 1 -4.316 4.839 4.819 1.00 0.00 C HETATM 125 C83 UNL 1 -4.539 5.798 5.951 1.00 0.00 C HETATM 126 C84 UNL 1 -5.661 6.779 5.528 1.00 0.00 C HETATM 127 C85 UNL 1 -6.888 6.024 5.135 1.00 0.00 C HETATM 128 C86 UNL 1 -7.496 5.156 6.198 1.00 0.00 C HETATM 129 C87 UNL 1 -8.654 4.435 5.517 1.00 0.00 C HETATM 130 C88 UNL 1 -9.407 3.542 6.435 1.00 0.00 C HETATM 131 C89 UNL 1 -8.529 2.527 7.059 1.00 0.00 C HETATM 132 C90 UNL 1 -7.792 1.632 6.099 1.00 0.00 C HETATM 133 C91 UNL 1 -6.962 0.624 6.886 1.00 0.00 C HETATM 134 C92 UNL 1 -6.176 -0.305 6.001 1.00 0.00 C HETATM 135 C93 UNL 1 -5.393 -1.309 6.843 1.00 0.00 C HETATM 136 H1 UNL 1 -5.113 -0.664 0.309 1.00 0.00 H HETATM 137 H2 UNL 1 -5.860 0.337 1.557 1.00 0.00 H HETATM 138 H3 UNL 1 -4.043 0.014 1.542 1.00 0.00 H HETATM 139 H4 UNL 1 -4.722 1.153 -1.033 1.00 0.00 H HETATM 140 H5 UNL 1 -5.592 2.140 0.191 1.00 0.00 H HETATM 141 H6 UNL 1 -2.615 1.434 0.301 1.00 0.00 H HETATM 142 H7 UNL 1 -3.558 2.465 1.492 1.00 0.00 H HETATM 143 H8 UNL 1 -4.255 3.924 -0.402 1.00 0.00 H HETATM 144 H9 UNL 1 -3.288 2.916 -1.533 1.00 0.00 H HETATM 145 H10 UNL 1 -1.214 3.530 -0.471 1.00 0.00 H HETATM 146 H11 UNL 1 -2.066 4.991 -1.056 1.00 0.00 H HETATM 147 H12 UNL 1 -2.995 5.362 1.232 1.00 0.00 H HETATM 148 H13 UNL 1 -2.169 3.920 1.840 1.00 0.00 H HETATM 149 H14 UNL 1 -0.965 6.471 0.620 1.00 0.00 H HETATM 150 H15 UNL 1 0.069 5.104 1.092 1.00 0.00 H HETATM 151 H16 UNL 1 -1.825 6.707 2.925 1.00 0.00 H HETATM 152 H17 UNL 1 -0.899 5.257 3.450 1.00 0.00 H HETATM 153 H18 UNL 1 0.411 7.905 2.480 1.00 0.00 H HETATM 154 H19 UNL 1 0.824 5.757 4.615 1.00 0.00 H HETATM 155 H20 UNL 1 2.430 8.291 3.965 1.00 0.00 H HETATM 156 H21 UNL 1 2.166 7.610 5.615 1.00 0.00 H HETATM 157 H22 UNL 1 4.372 7.044 4.814 1.00 0.00 H HETATM 158 H23 UNL 1 3.743 6.294 3.330 1.00 0.00 H HETATM 159 H24 UNL 1 3.352 5.427 6.232 1.00 0.00 H HETATM 160 H25 UNL 1 2.404 4.660 4.939 1.00 0.00 H HETATM 161 H26 UNL 1 4.692 4.186 3.860 1.00 0.00 H HETATM 162 H27 UNL 1 5.387 4.707 5.473 1.00 0.00 H HETATM 163 H28 UNL 1 4.097 3.054 6.686 1.00 0.00 H HETATM 164 H29 UNL 1 3.239 2.562 5.129 1.00 0.00 H HETATM 165 H30 UNL 1 6.148 2.093 5.863 1.00 0.00 H HETATM 166 H31 UNL 1 5.409 1.788 4.244 1.00 0.00 H HETATM 167 H32 UNL 1 4.431 0.577 6.896 1.00 0.00 H HETATM 168 H33 UNL 1 3.657 0.354 5.312 1.00 0.00 H HETATM 169 H34 UNL 1 5.800 -0.641 4.400 1.00 0.00 H HETATM 170 H35 UNL 1 6.355 -0.607 6.154 1.00 0.00 H HETATM 171 H36 UNL 1 3.685 -1.644 5.062 1.00 0.00 H HETATM 172 H37 UNL 1 4.243 -1.854 6.743 1.00 0.00 H HETATM 173 H38 UNL 1 6.006 -3.496 5.848 1.00 0.00 H HETATM 174 H39 UNL 1 5.426 -3.061 4.191 1.00 0.00 H HETATM 175 H40 UNL 1 4.564 -5.086 4.907 1.00 0.00 H HETATM 176 H41 UNL 1 3.253 -3.949 4.641 1.00 0.00 H HETATM 177 H42 UNL 1 3.560 -3.811 7.452 1.00 0.00 H HETATM 178 H43 UNL 1 4.067 -5.540 7.088 1.00 0.00 H HETATM 179 H44 UNL 1 2.147 -5.692 5.498 1.00 0.00 H HETATM 180 H45 UNL 1 1.764 -5.684 7.248 1.00 0.00 H HETATM 181 H46 UNL 1 1.474 -3.296 7.348 1.00 0.00 H HETATM 182 H47 UNL 1 2.059 -3.036 5.723 1.00 0.00 H HETATM 183 H48 UNL 1 -0.672 -4.128 6.576 1.00 0.00 H HETATM 184 H49 UNL 1 -0.171 -3.857 4.811 1.00 0.00 H HETATM 185 H50 UNL 1 -1.521 -1.551 4.577 1.00 0.00 H HETATM 186 H51 UNL 1 -0.784 0.041 6.952 1.00 0.00 H HETATM 187 H52 UNL 1 1.250 0.250 6.105 1.00 0.00 H HETATM 188 H53 UNL 1 0.399 1.824 5.932 1.00 0.00 H HETATM 189 H54 UNL 1 0.585 -0.928 3.622 1.00 0.00 H HETATM 190 H55 UNL 1 2.158 -1.744 1.689 1.00 0.00 H HETATM 191 H56 UNL 1 4.414 -1.322 1.840 1.00 0.00 H HETATM 192 H57 UNL 1 4.360 0.295 1.133 1.00 0.00 H HETATM 193 H58 UNL 1 4.315 -0.718 -0.853 1.00 0.00 H HETATM 194 H59 UNL 1 2.049 0.288 -0.438 1.00 0.00 H HETATM 195 H60 UNL 1 0.388 -0.269 -1.757 1.00 0.00 H HETATM 196 H61 UNL 1 -2.419 -3.008 -1.824 1.00 0.00 H HETATM 197 H62 UNL 1 -1.759 -4.669 -0.044 1.00 0.00 H HETATM 198 H63 UNL 1 -2.283 -2.990 0.539 1.00 0.00 H HETATM 199 H64 UNL 1 -0.080 -4.215 1.230 1.00 0.00 H HETATM 200 H65 UNL 1 -0.771 -4.568 -2.970 1.00 0.00 H HETATM 201 H66 UNL 1 1.525 -5.062 -3.103 1.00 0.00 H HETATM 202 H67 UNL 1 1.115 -7.146 -4.084 1.00 0.00 H HETATM 203 H68 UNL 1 2.372 -9.174 -3.566 1.00 0.00 H HETATM 204 H69 UNL 1 2.132 -8.892 -1.778 1.00 0.00 H HETATM 205 H70 UNL 1 0.125 -9.473 -2.001 1.00 0.00 H HETATM 206 H71 UNL 1 3.046 -6.033 -4.367 1.00 0.00 H HETATM 207 H72 UNL 1 4.767 -7.271 -4.000 1.00 0.00 H HETATM 208 H73 UNL 1 3.466 -4.556 -2.738 1.00 0.00 H HETATM 209 H74 UNL 1 4.900 -3.783 -2.179 1.00 0.00 H HETATM 210 H75 UNL 1 6.093 -2.563 -2.871 1.00 0.00 H HETATM 211 H76 UNL 1 7.164 -3.209 -5.683 1.00 0.00 H HETATM 212 H77 UNL 1 7.179 -1.600 -4.954 1.00 0.00 H HETATM 213 H78 UNL 1 5.172 -1.605 -5.547 1.00 0.00 H HETATM 214 H79 UNL 1 8.243 -2.203 -2.293 1.00 0.00 H HETATM 215 H80 UNL 1 9.421 -2.498 -4.103 1.00 0.00 H HETATM 216 H81 UNL 1 8.857 -4.029 -1.002 1.00 0.00 H HETATM 217 H82 UNL 1 9.024 -5.351 -3.117 1.00 0.00 H HETATM 218 H83 UNL 1 6.713 -4.959 -0.233 1.00 0.00 H HETATM 219 H84 UNL 1 6.916 -2.905 0.188 1.00 0.00 H HETATM 220 H85 UNL 1 2.570 -6.747 -0.904 1.00 0.00 H HETATM 221 H86 UNL 1 3.149 -3.832 -0.095 1.00 0.00 H HETATM 222 H87 UNL 1 2.138 -5.003 0.734 1.00 0.00 H HETATM 223 H88 UNL 1 5.259 -3.976 1.569 1.00 0.00 H HETATM 224 H89 UNL 1 4.013 -4.774 2.573 1.00 0.00 H HETATM 225 H90 UNL 1 5.540 -5.654 2.253 1.00 0.00 H HETATM 226 H91 UNL 1 -0.547 -1.972 -3.349 1.00 0.00 H HETATM 227 H92 UNL 1 -2.787 -1.668 -6.559 1.00 0.00 H HETATM 228 H93 UNL 1 -0.582 -4.294 -6.996 1.00 0.00 H HETATM 229 H94 UNL 1 0.765 -4.815 -6.006 1.00 0.00 H HETATM 230 H95 UNL 1 0.687 -3.323 -8.590 1.00 0.00 H HETATM 231 H96 UNL 1 2.542 -5.040 -7.238 1.00 0.00 H HETATM 232 H97 UNL 1 2.794 -2.396 -6.660 1.00 0.00 H HETATM 233 H98 UNL 1 2.060 -1.231 -9.326 1.00 0.00 H HETATM 234 H99 UNL 1 5.646 -1.373 -10.022 1.00 0.00 H HETATM 235 HA0 UNL 1 4.568 -2.432 -10.998 1.00 0.00 H HETATM 236 HA1 UNL 1 4.025 -0.737 -10.567 1.00 0.00 H HETATM 237 HA2 UNL 1 0.182 -1.072 -7.650 1.00 0.00 H HETATM 238 HA3 UNL 1 2.360 0.212 -7.689 1.00 0.00 H HETATM 239 HA4 UNL 1 3.497 0.280 -5.919 1.00 0.00 H HETATM 240 HA5 UNL 1 1.419 2.234 -6.619 1.00 0.00 H HETATM 241 HA6 UNL 1 -0.404 2.406 -7.972 1.00 0.00 H HETATM 242 HA7 UNL 1 -0.689 0.632 -7.949 1.00 0.00 H HETATM 243 HA8 UNL 1 0.724 0.830 -9.734 1.00 0.00 H HETATM 244 HA9 UNL 1 2.976 2.538 -4.350 1.00 0.00 H HETATM 245 HB0 UNL 1 -1.572 2.861 -3.187 1.00 0.00 H HETATM 246 HB1 UNL 1 -1.448 1.149 -3.682 1.00 0.00 H HETATM 247 HB2 UNL 1 -3.579 1.988 -4.398 1.00 0.00 H HETATM 248 HB3 UNL 1 -3.478 1.489 -6.487 1.00 0.00 H HETATM 249 HB4 UNL 1 -3.302 3.961 -6.191 1.00 0.00 H HETATM 250 HB5 UNL 1 -3.318 4.538 -3.231 1.00 0.00 H HETATM 251 HB6 UNL 1 -5.463 5.563 -2.492 1.00 0.00 H HETATM 252 HB7 UNL 1 -6.538 4.163 -2.863 1.00 0.00 H HETATM 253 HB8 UNL 1 -6.754 5.711 -3.725 1.00 0.00 H HETATM 254 HB9 UNL 1 -1.119 4.578 -4.123 1.00 0.00 H HETATM 255 HC0 UNL 1 -1.598 5.649 -6.923 1.00 0.00 H HETATM 256 HC1 UNL 1 0.426 6.498 -6.717 1.00 0.00 H HETATM 257 HC2 UNL 1 -1.025 7.826 -5.710 1.00 0.00 H HETATM 258 HC3 UNL 1 -1.731 6.496 -3.260 1.00 0.00 H HETATM 259 HC4 UNL 1 -3.120 8.513 -5.105 1.00 0.00 H HETATM 260 HC5 UNL 1 -3.713 6.996 -4.479 1.00 0.00 H HETATM 261 HC6 UNL 1 -4.535 7.675 -6.477 1.00 0.00 H HETATM 262 HC7 UNL 1 1.662 -2.835 -1.498 1.00 0.00 H HETATM 263 HC8 UNL 1 1.864 -0.405 -2.812 1.00 0.00 H HETATM 264 HC9 UNL 1 0.095 1.450 0.258 1.00 0.00 H HETATM 265 HD0 UNL 1 1.523 2.210 2.329 1.00 0.00 H HETATM 266 HD1 UNL 1 -0.672 1.313 2.619 1.00 0.00 H HETATM 267 HD2 UNL 1 -1.329 -0.398 1.077 1.00 0.00 H HETATM 268 HD3 UNL 1 -2.936 0.240 5.995 1.00 0.00 H HETATM 269 HD4 UNL 1 -2.946 0.457 3.854 1.00 0.00 H HETATM 270 HD5 UNL 1 -2.243 1.649 7.563 1.00 0.00 H HETATM 271 HD6 UNL 1 -1.263 2.721 6.571 1.00 0.00 H HETATM 272 HD7 UNL 1 -3.357 3.734 7.203 1.00 0.00 H HETATM 273 HD8 UNL 1 -4.339 2.535 6.357 1.00 0.00 H HETATM 274 HD9 UNL 1 -2.929 3.286 4.231 1.00 0.00 H HETATM 275 HE0 UNL 1 -2.273 4.570 5.232 1.00 0.00 H HETATM 276 HE1 UNL 1 -5.224 4.220 4.615 1.00 0.00 H HETATM 277 HE2 UNL 1 -4.123 5.386 3.888 1.00 0.00 H HETATM 278 HE3 UNL 1 -3.631 6.424 6.034 1.00 0.00 H HETATM 279 HE4 UNL 1 -4.802 5.291 6.883 1.00 0.00 H HETATM 280 HE5 UNL 1 -5.810 7.536 6.314 1.00 0.00 H HETATM 281 HE6 UNL 1 -5.252 7.298 4.636 1.00 0.00 H HETATM 282 HE7 UNL 1 -6.713 5.475 4.185 1.00 0.00 H HETATM 283 HE8 UNL 1 -7.669 6.793 4.865 1.00 0.00 H HETATM 284 HE9 UNL 1 -7.945 5.773 7.008 1.00 0.00 H HETATM 285 HF0 UNL 1 -6.790 4.468 6.670 1.00 0.00 H HETATM 286 HF1 UNL 1 -8.245 3.820 4.661 1.00 0.00 H HETATM 287 HF2 UNL 1 -9.334 5.177 5.045 1.00 0.00 H HETATM 288 HF3 UNL 1 -9.909 4.199 7.195 1.00 0.00 H HETATM 289 HF4 UNL 1 -10.198 3.004 5.848 1.00 0.00 H HETATM 290 HF5 UNL 1 -9.193 1.837 7.665 1.00 0.00 H HETATM 291 HF6 UNL 1 -7.807 2.963 7.795 1.00 0.00 H HETATM 292 HF7 UNL 1 -8.494 1.078 5.462 1.00 0.00 H HETATM 293 HF8 UNL 1 -7.113 2.225 5.433 1.00 0.00 H HETATM 294 HF9 UNL 1 -7.655 -0.005 7.507 1.00 0.00 H HETATM 295 HG0 UNL 1 -6.288 1.174 7.565 1.00 0.00 H HETATM 296 HG1 UNL 1 -5.403 0.320 5.473 1.00 0.00 H HETATM 297 HG2 UNL 1 -6.856 -0.819 5.310 1.00 0.00 H HETATM 298 HG3 UNL 1 -4.539 -0.859 7.362 1.00 0.00 H HETATM 299 HG4 UNL 1 -5.109 -2.156 6.205 1.00 0.00 H HETATM 300 HG5 UNL 1 -6.102 -1.651 7.643 1.00 0.00 H CONECT 1 2 136 137 138 CONECT 2 3 139 140 CONECT 3 4 141 142 CONECT 4 5 143 144 CONECT 5 6 145 146 CONECT 6 7 147 148 CONECT 7 8 149 150 CONECT 8 9 151 152 CONECT 9 10 10 153 CONECT 10 11 154 CONECT 11 12 155 156 CONECT 12 13 157 158 CONECT 13 14 159 160 CONECT 14 15 161 162 CONECT 15 16 163 164 CONECT 16 17 165 166 CONECT 17 18 167 168 CONECT 18 19 169 170 CONECT 19 20 171 172 CONECT 20 21 173 174 CONECT 21 22 175 176 CONECT 22 23 177 178 CONECT 23 24 179 180 CONECT 24 25 181 182 CONECT 25 26 183 184 CONECT 26 27 27 28 CONECT 28 29 185 CONECT 29 30 119 186 CONECT 30 31 187 188 CONECT 31 32 CONECT 32 33 117 189 CONECT 33 34 CONECT 34 35 37 190 CONECT 35 36 191 192 CONECT 36 193 CONECT 37 38 115 194 CONECT 38 39 CONECT 39 40 113 195 CONECT 40 41 CONECT 41 42 44 196 CONECT 42 43 197 198 CONECT 43 199 CONECT 44 45 71 200 CONECT 45 46 CONECT 46 47 66 201 CONECT 47 48 CONECT 48 49 51 202 CONECT 49 50 203 204 CONECT 50 205 CONECT 51 52 53 206 CONECT 52 207 CONECT 53 54 66 208 CONECT 54 55 CONECT 55 56 64 209 CONECT 56 57 CONECT 57 58 60 210 CONECT 58 59 211 212 CONECT 59 213 CONECT 60 61 62 214 CONECT 61 215 CONECT 62 63 64 216 CONECT 63 217 CONECT 64 65 218 CONECT 65 219 CONECT 66 67 220 CONECT 67 68 221 222 CONECT 68 69 70 70 CONECT 69 223 224 225 CONECT 71 72 113 226 CONECT 72 73 CONECT 73 74 77 112 CONECT 74 75 75 76 CONECT 76 227 CONECT 77 78 228 229 CONECT 78 79 80 230 CONECT 79 231 CONECT 80 81 85 232 CONECT 81 82 233 CONECT 82 83 84 84 CONECT 83 234 235 236 CONECT 85 86 112 237 CONECT 86 87 88 238 CONECT 87 239 CONECT 88 89 91 240 CONECT 89 90 241 242 CONECT 90 243 CONECT 91 92 CONECT 92 93 96 111 CONECT 93 94 94 95 CONECT 95 244 CONECT 96 97 245 246 CONECT 97 98 99 247 CONECT 98 248 CONECT 99 100 104 249 CONECT 100 101 250 CONECT 101 102 103 103 CONECT 102 251 252 253 CONECT 104 105 111 254 CONECT 105 106 107 255 CONECT 106 256 CONECT 107 108 109 257 CONECT 108 258 CONECT 109 110 259 260 CONECT 110 261 CONECT 113 114 262 CONECT 114 263 CONECT 115 116 117 264 CONECT 116 265 CONECT 117 118 266 CONECT 118 267 CONECT 119 120 121 268 CONECT 120 269 CONECT 121 122 270 271 CONECT 122 123 272 273 CONECT 123 124 274 275 CONECT 124 125 276 277 CONECT 125 126 278 279 CONECT 126 127 280 281 CONECT 127 128 282 283 CONECT 128 129 284 285 CONECT 129 130 286 287 CONECT 130 131 288 289 CONECT 131 132 290 291 CONECT 132 133 292 293 CONECT 133 134 294 295 CONECT 134 135 296 297 CONECT 135 298 299 300 END SMILES for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))[H][C@@](O)(CO)[C@@]([H])(O)C1O[C@@](C[C@]([H])(O)[C@@]1([H])NC(C)=O)(O[C@]([H])(CO)[C@@]([H])(O)C1O[C@@](C[C@]([H])(O)[C@@]1([H])NC(C)=O)(O[C@]1([H])[C@@]([H])(O)[C@]([H])(O[C@]2([H])[C@@]([H])(CO)O[C@@]([H])(OC[C@]([H])(NC(=O)CCCCCCCCCCCCCCCC=CCCCCCCCC)[C@]([H])(O)CCCCCCCCCCCCCCC)[C@]([H])(O)[C@@]2([H])O)O[C@]([H])(CO)[C@]1([H])O[C@]1([H])O[C@]([H])(CO)[C@]([H])(O)[C@]([H])(O[C@]2([H])O[C@]([H])(CO)[C@]([H])(O)[C@]([H])(O)[C@@]2([H])O)[C@@]1([H])CC(C)=O)C(O)=O)C(O)=O INCHI for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z)))InChI=1S/C93H165N3O39/c1-6-8-10-12-14-16-18-20-21-22-23-24-25-26-27-28-29-31-33-35-37-39-41-43-68(110)96-58(59(106)42-40-38-36-34-32-30-19-17-15-13-11-9-7-2)53-124-87-78(118)76(116)81(66(51-101)127-87)130-89-79(119)85(82(67(52-102)128-89)131-86-57(44-54(3)103)80(73(113)64(49-99)125-86)129-88-77(117)75(115)72(112)63(48-98)126-88)135-93(91(122)123)46-61(108)70(95-56(5)105)84(134-93)74(114)65(50-100)132-92(90(120)121)45-60(107)69(94-55(4)104)83(133-92)71(111)62(109)47-97/h20-21,57-67,69-89,97-102,106-109,111-119H,6-19,22-53H2,1-5H3,(H,94,104)(H,95,105)(H,96,110)(H,120,121)(H,122,123)/t57-,58+,59-,60+,61+,62-,63-,64-,65-,66-,67-,69-,70-,71-,72+,73+,74-,75+,76-,77-,78-,79-,80-,81-,82+,83?,84?,85-,86+,87-,88+,89+,92-,93+/m1/s1 3D Structure for HMDB0011821 (Ganglioside GD1b (d18:0/26:1(17Z))) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Synonyms | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemical Formula | C93H165N3O39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Average Molecular Weight | 1949.3019 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Monoisotopic Molecular Weight | 1948.102022553 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IUPAC Name | (2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-5-acetamido-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-6-{[(2S,3R)-2-(hexacos-17-enamido)-3-hydroxyoctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxyoxane-2-carboxylic acid | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Traditional Name | (2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-5-acetamido-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-6-{[(2S,3R)-2-(hexacos-17-enamido)-3-hydroxyoctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxyoxane-2-carboxylic acid | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| CAS Registry Number | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SMILES | [H][C@@](O)(CO)[C@@]([H])(O)C1O[C@@](C[C@]([H])(O)[C@@]1([H])NC(C)=O)(O[C@]([H])(CO)[C@@]([H])(O)C1O[C@@](C[C@]([H])(O)[C@@]1([H])NC(C)=O)(O[C@]1([H])[C@@]([H])(O)[C@]([H])(O[C@]2([H])[C@@]([H])(CO)O[C@@]([H])(OC[C@]([H])(NC(=O)CCCCCCCCCCCCCCCC=CCCCCCCCC)[C@]([H])(O)CCCCCCCCCCCCCCC)[C@]([H])(O)[C@@]2([H])O)O[C@]([H])(CO)[C@]1([H])O[C@]1([H])O[C@]([H])(CO)[C@]([H])(O)[C@]([H])(O[C@]2([H])O[C@]([H])(CO)[C@]([H])(O)[C@]([H])(O)[C@@]2([H])O)[C@@]1([H])CC(C)=O)C(O)=O)C(O)=O | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Identifier | InChI=1S/C93H165N3O39/c1-6-8-10-12-14-16-18-20-21-22-23-24-25-26-27-28-29-31-33-35-37-39-41-43-68(110)96-58(59(106)42-40-38-36-34-32-30-19-17-15-13-11-9-7-2)53-124-87-78(118)76(116)81(66(51-101)127-87)130-89-79(119)85(82(67(52-102)128-89)131-86-57(44-54(3)103)80(73(113)64(49-99)125-86)129-88-77(117)75(115)72(112)63(48-98)126-88)135-93(91(122)123)46-61(108)70(95-56(5)105)84(134-93)74(114)65(50-100)132-92(90(120)121)45-60(107)69(94-55(4)104)83(133-92)71(111)62(109)47-97/h20-21,57-67,69-89,97-102,106-109,111-119H,6-19,22-53H2,1-5H3,(H,94,104)(H,95,105)(H,96,110)(H,120,121)(H,122,123)/t57-,58+,59-,60+,61+,62-,63-,64-,65-,66-,67-,69-,70-,71-,72+,73+,74-,75+,76-,77-,78-,79-,80-,81-,82+,83?,84?,85-,86+,87-,88+,89+,92-,93+/m1/s1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Key | UAKVFUWDGIZDMA-KDUBURPXSA-N | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemical Taxonomy | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description | Belongs to the class of organic compounds known as gangliosides. These are lipid molecules composed of a glycosphingolipid (ceramide and saccharide) with one or more sialic acids linked on the sugar chain. They are usually oligoglycosylceramides derived from lactosylceramide and containing a sialic acid residue such as N-acetylneuraminic acid. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Kingdom | Organic compounds | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Super Class | Lipids and lipid-like molecules | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Class | Sphingolipids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sub Class | Glycosphingolipids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Direct Parent | Gangliosides | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative Parents |
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| Substituents |
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| Molecular Framework | Aliphatic heteromonocyclic compounds | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| External Descriptors | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Ontology | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Physiological effect | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Disposition | Biological location
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| Process | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Role | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Physical Properties | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| State | Solid | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Molecular Properties |
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| Experimental Chromatographic Properties | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Predicted Molecular Properties |
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| Predicted Chromatographic Properties | Predicted Kovats Retention IndicesNot Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Spectra | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MS/MS Spectra
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| Biological Properties | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Cellular Locations |
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| Biospecimen Locations | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Tissue Locations | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Pathways |
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| Normal Concentrations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Abnormal Concentrations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Associated Disorders and Diseases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Disease References | None | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Associated OMIM IDs | None | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| External Links | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| DrugBank ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phenol Explorer Compound ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| FooDB ID | FDB028490 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KNApSAcK ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemspider ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KEGG Compound ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BioCyc ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BiGG ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Wikipedia Link | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| METLIN ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PubChem Compound | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PDB ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ChEBI ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Food Biomarker Ontology | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| VMH ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MarkerDB ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Good Scents ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| References | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Synthesis Reference | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Material Safety Data Sheet (MSDS) | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| General References |
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Only showing the first 10 proteins. There are 41 proteins in total.
Enzymes
- General function:
- Involved in transferase activity, transferring hexosyl groups
- Specific function:
- Catalyzes the formation of some glycolipid via the addition of N-acetylgalactosamine (GalNAc) in alpha-1,3-linkage to some substrate. Glycolipids probably serve for adherence of some pathogens
- Gene Name:
- GBGT1
- Uniprot ID:
- Q8N5D6
- Molecular weight:
- 40126.9
- General function:
- Involved in N-acetylglucosaminylphosphatidylinositol de
- Specific function:
- Involved in the second step of GPI biosynthesis. De-N-acetylation of N-acetylglucosaminyl-phosphatidylinositol.
- Gene Name:
- PIGL
- Uniprot ID:
- Q9Y2B2
- Molecular weight:
- 28530.965
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGQ
- Uniprot ID:
- Q9BRB3
- Molecular weight:
- 65343.25
- General function:
- Involved in biosynthetic process
- Specific function:
- Necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, the very early intermediate in GPI-anchor biosynthesis.
- Gene Name:
- PIGA
- Uniprot ID:
- P37287
- Molecular weight:
- 54126.065
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltr
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGH
- Uniprot ID:
- Q14442
- Molecular weight:
- 21080.415
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltr
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGP
- Uniprot ID:
- P57054
- Molecular weight:
- 18089.055
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGC
- Uniprot ID:
- Q92535
- Molecular weight:
- 33582.18
- General function:
- Involved in sphingolipid activator protein activity
- Specific function:
- Binds gangliosides and stimulates ganglioside GM2 degradation. It stimulates only the breakdown of ganglioside GM2 and glycolipid GA2 by beta-hexosaminidase A. It extracts single GM2 molecules from membranes and presents them in soluble form to beta-hexosaminidase A for cleavage of N-acetyl-D-galactosamine and conversion to GM3
- Gene Name:
- GM2A
- Uniprot ID:
- P17900
- Molecular weight:
- 20838.1
- General function:
- Involved in immune response
- Specific function:
- T-cell surface glycoprotein CD1e, soluble is required for the presentation of glycolipid antigens on the cell surface. The membrane-associated form is not active
- Gene Name:
- CD1E
- Uniprot ID:
- P15812
- Molecular weight:
- 43626.1
- General function:
- Involved in cholesterol binding
- Specific function:
- May be involved in the regulation of the lipid composition of sperm membranes during the maturation in the epididymis
- Gene Name:
- NPC2
- Uniprot ID:
- P61916
- Molecular weight:
- 16570.1
Only showing the first 10 proteins. There are 41 proteins in total.