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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (131)transporters (1) Show 132 proteins XML

enzymes (131)transporters (1) Show 132 proteins

Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-18 18:28:40 UTC

Update Date

2022-11-30 20:09:28 UTC

HMDB ID

HMDB0295453

Secondary Accession Numbers

None

Metabolite Identification

Common Name

DG(16:0/0:0/PGD2)

Description

DG(16:0/0:0/PGD2) belongs to the family of Diacylglycerols. These are glycerolipids lipids containing a common glycerol backbone to which at least one fatty acyl group is esterified. It is involved in the phospholipid metabolic pathway.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309182120292D          

 47 47  0  0  1  0            999 V2000
    8.2840  -17.9837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5695  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5695  -19.2212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8551  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1406  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4261  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7116  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9972  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2827  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5682  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8538  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1393  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4248  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2897  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0041  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7186  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4331  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1475  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9985  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -17.9837    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.4274  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1419  -17.9837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -19.2212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5708  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2853  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9998  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7142  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4287  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4287  -17.1587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1432  -16.7462    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.2294  -15.9257    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.6163  -15.3737    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0364  -15.7542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4489  -16.4686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2694  -16.5549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.8969  -17.0817    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   17.0684  -17.8887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4553  -18.4407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6268  -19.2477    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.0137  -19.7997    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.4114  -19.5027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5830  -20.3096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3676  -20.5646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5391  -21.3715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3237  -21.6265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -17.1587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  1 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 31 30  1  1  0  0  0
 31 32  1  0  0  0  0
 32 33  1  1  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 31 37  1  0  0  0  0
 37 38  1  6  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  6  0  0  0
 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 20 47  1  1  0  0  0
M  END

HMDB0295453
     RDKit          3D
DG(16:0/0:0/PGD2)
115115  0  0  0  0  0  0  0  0999 V2000
  -16.5105    0.8495   -1.2053 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.1061    2.2934   -1.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3327    2.6257    0.1080 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0638    1.7949    0.1987 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1523    2.0307   -0.9583 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9176    1.1639   -0.8172 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1346    1.4491    0.4324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9255    0.5607    0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0023    0.7888   -0.6108 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7603   -0.1053   -0.5112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0101    0.1471    0.7462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7534   -0.7350    0.8830 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0933   -2.1677    0.8403 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0159   -3.1801    1.0042 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8957   -3.1308    0.0268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0606   -1.9161    0.1891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4435   -1.4214   -0.8020 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9783   -1.3692    1.4365 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2066   -0.2522    1.7620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7227   -0.6647    1.5564 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0899    0.3615    1.9582 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5058   -1.9874    2.2076 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7695   -2.4584    2.0871 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656   -2.6742    0.9776 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0684   -2.3724   -0.1257 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9267   -3.2383    1.1469 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7328   -3.0974   -0.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9655   -1.6367   -0.4097 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7996   -1.5124   -1.6035 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9991   -0.9452   -1.6019 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5772   -0.4054   -0.3884 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9046   -1.0315    0.0054 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.8352   -2.4964    0.1826 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.2098   -3.1516   -0.8859 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3123   -2.9044    0.0640 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9034   -1.9394   -0.8537 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9491   -2.0652   -1.4645 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0210   -0.7518   -0.9368 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.7760    0.4824   -0.5255 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8703    1.5197   -1.3108 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6235    2.7596   -0.9053 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.4944    3.0071    0.4618 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1084    2.4372   -1.1238 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9675    3.6092   -0.7408 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4135    3.2584   -0.9641 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8352    2.0764   -0.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6776    2.2678    1.3345 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.8966    0.2629   -1.9231 H   0  0  0  0  0  0  0  0  0  0  0  0
  -17.5752    0.7118   -1.5498 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.4694    0.4177   -0.1782 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.5583    2.6250   -2.0570 H   0  0  0  0  0  0  0  0  0  0  0  0
  -17.0356    2.9112   -1.1284 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.9617    2.3629    0.9729 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1100    3.6897    0.1303 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5442    2.1578    1.1311 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2881    0.7273    0.3749 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6174    1.8394   -1.9401 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7954    3.0943   -1.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1986    0.0753   -0.8053 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2686    1.2791   -1.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8368    2.5341    0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7583    1.3603    1.3555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4310    0.6586    1.5261 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2654   -0.5189    0.5118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4934    0.4364   -1.5618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7392    1.8465   -0.7593 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1152    0.1674   -1.3679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0846   -1.1461   -0.6751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5682   -0.0326    1.6840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6172    1.1913    0.8142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0948   -0.4050    0.0799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3872   -0.4810    1.9145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8922   -2.4413    1.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6445   -2.3725   -0.1407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5481   -3.0825    2.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4240   -4.2282    0.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2698   -4.0469    0.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3120   -3.1700   -1.0173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3770    0.1573    2.7584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4015    0.5201    0.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6196   -0.8089    0.4625 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3041    1.2360    1.7003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2216   -2.7269    1.7244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7742   -1.9400    3.3007 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7886   -4.3155    1.4339 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4862   -2.6962    1.9507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1571   -3.6030   -0.9114 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6899   -3.6724   -0.0509 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1879   -1.0418    0.4550 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9421   -1.2585   -0.7470 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4036   -1.9107   -2.5307 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5162   -0.9115   -2.5709 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9872   -0.3036    0.5010 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8702    0.6667   -0.6429 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2296   -0.6089    1.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5103   -2.8302    1.1652 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8440   -3.3555   -1.6277 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7848   -3.0008    1.0482 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3864   -3.9209   -0.4273 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7201   -0.6465   -2.0032 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2403    0.4812    0.4467 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4091    1.5129   -2.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3027    3.6284   -1.4759 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2417    2.6092    0.9727 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2450    2.2638   -2.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3560    1.5452   -0.5360 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.8078    3.9141    0.3115 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.7013    4.4597   -1.4330 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.5943    2.9933   -2.0413 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.0921    4.1146   -0.7493 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.3249    1.1769   -0.5291 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9269    1.9206   -0.3476 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4492    2.9624    1.6823 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6625    2.6190    1.6150 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.8367    1.2538    1.7985 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
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 46112  1  0
 47113  1  0
 47114  1  0
 47115  1  0
M  END


  Mrv1652309182120292D          

 47 47  0  0  1  0            999 V2000
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    7.5695  -19.2212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8551  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1406  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4261  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7116  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9972  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2827  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5682  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8538  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1393  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4248  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2897  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0041  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7186  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4331  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1475  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9985  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -17.9837    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.4274  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1419  -17.9837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8564  -19.2212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5708  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2853  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9998  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7142  -18.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4287  -17.9837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4287  -17.1587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1432  -16.7462    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.2294  -15.9257    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.6163  -15.3737    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   17.4489  -16.4686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2694  -16.5549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   17.0684  -17.8887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4553  -18.4407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   16.0137  -19.7997    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.4114  -19.5027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5830  -20.3096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3676  -20.5646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5391  -21.3715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3237  -21.6265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7129  -17.1587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
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 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  1 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
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 31 32  1  0  0  0  0
 32 33  1  1  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 31 37  1  0  0  0  0
 37 38  1  6  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  6  0  0  0
 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 20 47  1  1  0  0  0
M  END
> <DATABASE_ID>
HMDB0295453

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C39H68O8/c1-3-5-7-8-9-10-11-12-13-14-15-16-21-25-38(44)46-30-33(41)31-47-39(45)26-22-18-17-20-24-34-35(37(43)29-36(34)42)28-27-32(40)23-19-6-4-2/h17,20,27-28,32-36,40-42H,3-16,18-19,21-26,29-31H2,1-2H3/b20-17-,28-27+/t32-,33+,34+,35+,36-/m0/s1

> <INCHI_KEY>
JSRJBSPRDAWJCO-JRWZAQJCSA-N

> <FORMULA>
C39H68O8

> <MOLECULAR_WEIGHT>
664.965

> <EXACT_MASS>
664.49141915

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
115

> <JCHEM_AVERAGE_POLARIZABILITY>
82.01857920655394

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl hexadecanoate

> <ALOGPS_LOGP>
7.49

> <JCHEM_LOGP>
8.97178114133333

> <ALOGPS_LOGS>
-6.20

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.131350673534545

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.471376523511005

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5973943340377592

> <JCHEM_POLAR_SURFACE_AREA>
130.36

> <JCHEM_REFRACTIVITY>
190.05040000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
32

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.20e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl hexadecanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0295453
     RDKit          3D
DG(16:0/0:0/PGD2)
115115  0  0  0  0  0  0  0  0999 V2000
  -16.5105    0.8495   -1.2053 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.1061    2.2934   -1.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3327    2.6257    0.1080 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0638    1.7949    0.1987 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1523    2.0307   -0.9583 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9176    1.1639   -0.8172 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1346    1.4491    0.4324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9255    0.5607    0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0023    0.7888   -0.6108 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7603   -0.1053   -0.5112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0101    0.1471    0.7462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7534   -0.7350    0.8830 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0933   -2.1677    0.8403 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0159   -3.1801    1.0042 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8957   -3.1308    0.0268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0606   -1.9161    0.1891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4435   -1.4214   -0.8020 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9783   -1.3692    1.4365 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2066   -0.2522    1.7620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7227   -0.6647    1.5564 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0899    0.3615    1.9582 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5058   -1.9874    2.2076 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7695   -2.4584    2.0871 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656   -2.6742    0.9776 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0684   -2.3724   -0.1257 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9267   -3.2383    1.1469 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7328   -3.0974   -0.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9655   -1.6367   -0.4097 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.9046   -1.0315    0.0054 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.8352   -2.4964    0.1826 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.2098   -3.1516   -0.8859 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3123   -2.9044    0.0640 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9034   -1.9394   -0.8537 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9491   -2.0652   -1.4645 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0210   -0.7518   -0.9368 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.7760    0.4824   -0.5255 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8703    1.5197   -1.3108 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6235    2.7596   -0.9053 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.4944    3.0071    0.4618 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1084    2.4372   -1.1238 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9675    3.6092   -0.7408 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4135    3.2584   -0.9641 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8352    2.0764   -0.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6776    2.2678    1.3345 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.4934    0.4364   -1.5618 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.1152    0.1674   -1.3679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0846   -1.1461   -0.6751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5682   -0.0326    1.6840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6172    1.1913    0.8142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0948   -0.4050    0.0799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3872   -0.4810    1.9145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8922   -2.4413    1.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6445   -2.3725   -0.1407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5481   -3.0825    2.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4240   -4.2282    0.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2698   -4.0469    0.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3120   -3.1700   -1.0173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3770    0.1573    2.7584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4015    0.5201    0.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6196   -0.8089    0.4625 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3041    1.2360    1.7003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2216   -2.7269    1.7244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7742   -1.9400    3.3007 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7886   -4.3155    1.4339 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4862   -2.6962    1.9507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1571   -3.6030   -0.9114 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6899   -3.6724   -0.0509 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1879   -1.0418    0.4550 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9421   -1.2585   -0.7470 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4036   -1.9107   -2.5307 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5162   -0.9115   -2.5709 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9872   -0.3036    0.5010 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8702    0.6667   -0.6429 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2296   -0.6089    1.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5103   -2.8302    1.1652 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8440   -3.3555   -1.6277 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7848   -3.0008    1.0482 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3864   -3.9209   -0.4273 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7201   -0.6465   -2.0032 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2403    0.4812    0.4467 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4091    1.5129   -2.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3027    3.6284   -1.4759 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2417    2.6092    0.9727 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2450    2.2638   -2.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3560    1.5452   -0.5360 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.8078    3.9141    0.3115 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.7013    4.4597   -1.4330 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.5943    2.9933   -2.0413 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.0921    4.1146   -0.7493 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.3249    1.1769   -0.5291 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9269    1.9206   -0.3476 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4492    2.9624    1.6823 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6625    2.6190    1.6150 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.8367    1.2538    1.7985 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
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  9 10  1  0
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 16 17  2  0
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 31 32  1  0
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 33 34  1  0
 33 35  1  0
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 36 37  2  0
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 38 39  1  0
 39 40  2  0
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  1 48  1  0
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 47115  1  0
M  END

HEADER    PROTEIN                                 18-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-SEP-21         0                                  
HETATM    1  O   UNK     0      15.463 -33.570   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      14.130 -34.340   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      14.130 -35.880   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      12.796 -33.570   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.462 -34.340   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.129 -33.570   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.795 -34.340   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.461 -33.570   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.128 -34.340   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.794 -33.570   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.460 -34.340   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.127 -33.570   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.793 -34.340   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.541 -33.570   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.874 -34.340   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.208 -33.570   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.542 -34.340   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.875 -33.570   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      16.797 -34.340   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      18.131 -33.570   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      19.465 -34.340   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      20.798 -33.570   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      22.132 -34.340   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      22.132 -35.880   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      23.466 -33.570   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      24.799 -34.340   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      26.133 -33.570   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      27.467 -34.340   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      28.800 -33.570   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      28.800 -32.030   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      30.134 -31.260   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      30.295 -29.728   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      29.150 -28.698   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      31.801 -29.408   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      32.571 -30.741   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      34.103 -30.902   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      31.541 -31.886   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      31.861 -33.392   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      30.717 -34.423   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      31.037 -35.929   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      29.892 -36.960   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      32.501 -36.405   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      32.822 -37.911   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      34.286 -38.387   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      34.606 -39.894   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      36.071 -40.369   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      18.131 -32.030   0.000  0.00  0.00           O+0
CONECT    1    2   19                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19    1   20                                                       
CONECT   20   19   21   47                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   37                                                  
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   31   38                                                  
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45                                                            
CONECT   47   20                                                            
MASTER        0    0    0    0    0    0    0    0   47    0   94    0
END

COMPND    HMDB0295453
HETATM    1  C1  UNL     1     -16.510   0.850  -1.205  1.00  0.00           C  
HETATM    2  C2  UNL     1     -16.106   2.293  -1.151  1.00  0.00           C  
HETATM    3  C3  UNL     1     -15.333   2.626   0.108  1.00  0.00           C  
HETATM    4  C4  UNL     1     -14.064   1.795   0.199  1.00  0.00           C  
HETATM    5  C5  UNL     1     -13.152   2.031  -0.958  1.00  0.00           C  
HETATM    6  C6  UNL     1     -11.918   1.164  -0.817  1.00  0.00           C  
HETATM    7  C7  UNL     1     -11.135   1.449   0.432  1.00  0.00           C  
HETATM    8  C8  UNL     1      -9.925   0.561   0.533  1.00  0.00           C  
HETATM    9  C9  UNL     1      -9.002   0.789  -0.611  1.00  0.00           C  
HETATM   10  C10 UNL     1      -7.760  -0.105  -0.511  1.00  0.00           C  
HETATM   11  C11 UNL     1      -7.010   0.147   0.746  1.00  0.00           C  
HETATM   12  C12 UNL     1      -5.753  -0.735   0.883  1.00  0.00           C  
HETATM   13  C13 UNL     1      -6.093  -2.168   0.840  1.00  0.00           C  
HETATM   14  C14 UNL     1      -5.016  -3.180   1.004  1.00  0.00           C  
HETATM   15  C15 UNL     1      -3.896  -3.131   0.027  1.00  0.00           C  
HETATM   16  C16 UNL     1      -3.061  -1.916   0.189  1.00  0.00           C  
HETATM   17  O1  UNL     1      -2.444  -1.421  -0.802  1.00  0.00           O  
HETATM   18  O2  UNL     1      -2.978  -1.369   1.436  1.00  0.00           O  
HETATM   19  C17 UNL     1      -2.207  -0.252   1.762  1.00  0.00           C  
HETATM   20  C18 UNL     1      -0.723  -0.665   1.556  1.00  0.00           C  
HETATM   21  O3  UNL     1       0.090   0.361   1.958  1.00  0.00           O  
HETATM   22  C19 UNL     1      -0.506  -1.987   2.208  1.00  0.00           C  
HETATM   23  O4  UNL     1       0.769  -2.458   2.087  1.00  0.00           O  
HETATM   24  C20 UNL     1       1.566  -2.674   0.978  1.00  0.00           C  
HETATM   25  O5  UNL     1       1.068  -2.372  -0.126  1.00  0.00           O  
HETATM   26  C21 UNL     1       2.927  -3.238   1.147  1.00  0.00           C  
HETATM   27  C22 UNL     1       3.733  -3.097  -0.100  1.00  0.00           C  
HETATM   28  C23 UNL     1       3.966  -1.637  -0.410  1.00  0.00           C  
HETATM   29  C24 UNL     1       4.800  -1.512  -1.604  1.00  0.00           C  
HETATM   30  C25 UNL     1       5.999  -0.945  -1.602  1.00  0.00           C  
HETATM   31  C26 UNL     1       6.577  -0.405  -0.388  1.00  0.00           C  
HETATM   32  C27 UNL     1       7.905  -1.031   0.005  1.00  0.00           C  
HETATM   33  C28 UNL     1       7.835  -2.496   0.183  1.00  0.00           C  
HETATM   34  O6  UNL     1       7.210  -3.152  -0.886  1.00  0.00           O  
HETATM   35  C29 UNL     1       9.312  -2.904   0.064  1.00  0.00           C  
HETATM   36  C30 UNL     1       9.903  -1.939  -0.854  1.00  0.00           C  
HETATM   37  O7  UNL     1      10.949  -2.065  -1.465  1.00  0.00           O  
HETATM   38  C31 UNL     1       9.021  -0.752  -0.937  1.00  0.00           C  
HETATM   39  C32 UNL     1       9.776   0.482  -0.525  1.00  0.00           C  
HETATM   40  C33 UNL     1       9.870   1.520  -1.311  1.00  0.00           C  
HETATM   41  C34 UNL     1      10.623   2.760  -0.905  1.00  0.00           C  
HETATM   42  O8  UNL     1      10.494   3.007   0.462  1.00  0.00           O  
HETATM   43  C35 UNL     1      12.108   2.437  -1.124  1.00  0.00           C  
HETATM   44  C36 UNL     1      12.967   3.609  -0.741  1.00  0.00           C  
HETATM   45  C37 UNL     1      14.413   3.258  -0.964  1.00  0.00           C  
HETATM   46  C38 UNL     1      14.835   2.076  -0.154  1.00  0.00           C  
HETATM   47  C39 UNL     1      14.678   2.268   1.334  1.00  0.00           C  
HETATM   48  H1  UNL     1     -15.897   0.263  -1.923  1.00  0.00           H  
HETATM   49  H2  UNL     1     -17.575   0.712  -1.550  1.00  0.00           H  
HETATM   50  H3  UNL     1     -16.469   0.418  -0.178  1.00  0.00           H  
HETATM   51  H4  UNL     1     -15.558   2.625  -2.057  1.00  0.00           H  
HETATM   52  H5  UNL     1     -17.036   2.911  -1.128  1.00  0.00           H  
HETATM   53  H6  UNL     1     -15.962   2.363   0.973  1.00  0.00           H  
HETATM   54  H7  UNL     1     -15.110   3.690   0.130  1.00  0.00           H  
HETATM   55  H8  UNL     1     -13.544   2.158   1.131  1.00  0.00           H  
HETATM   56  H9  UNL     1     -14.288   0.727   0.375  1.00  0.00           H  
HETATM   57  H10 UNL     1     -13.617   1.839  -1.940  1.00  0.00           H  
HETATM   58  H11 UNL     1     -12.795   3.094  -1.001  1.00  0.00           H  
HETATM   59  H12 UNL     1     -12.199   0.075  -0.805  1.00  0.00           H  
HETATM   60  H13 UNL     1     -11.269   1.279  -1.719  1.00  0.00           H  
HETATM   61  H14 UNL     1     -10.837   2.534   0.358  1.00  0.00           H  
HETATM   62  H15 UNL     1     -11.758   1.360   1.356  1.00  0.00           H  
HETATM   63  H16 UNL     1      -9.431   0.659   1.526  1.00  0.00           H  
HETATM   64  H17 UNL     1     -10.265  -0.519   0.512  1.00  0.00           H  
HETATM   65  H18 UNL     1      -9.493   0.436  -1.562  1.00  0.00           H  
HETATM   66  H19 UNL     1      -8.739   1.846  -0.759  1.00  0.00           H  
HETATM   67  H20 UNL     1      -7.115   0.167  -1.368  1.00  0.00           H  
HETATM   68  H21 UNL     1      -8.085  -1.146  -0.675  1.00  0.00           H  
HETATM   69  H22 UNL     1      -7.568  -0.033   1.684  1.00  0.00           H  
HETATM   70  H23 UNL     1      -6.617   1.191   0.814  1.00  0.00           H  
HETATM   71  H24 UNL     1      -5.095  -0.405   0.080  1.00  0.00           H  
HETATM   72  H25 UNL     1      -5.387  -0.481   1.914  1.00  0.00           H  
HETATM   73  H26 UNL     1      -6.892  -2.441   1.597  1.00  0.00           H  
HETATM   74  H27 UNL     1      -6.645  -2.373  -0.141  1.00  0.00           H  
HETATM   75  H28 UNL     1      -4.548  -3.083   2.038  1.00  0.00           H  
HETATM   76  H29 UNL     1      -5.424  -4.228   0.969  1.00  0.00           H  
HETATM   77  H30 UNL     1      -3.270  -4.047   0.177  1.00  0.00           H  
HETATM   78  H31 UNL     1      -4.312  -3.170  -1.017  1.00  0.00           H  
HETATM   79  H32 UNL     1      -2.377   0.157   2.758  1.00  0.00           H  
HETATM   80  H33 UNL     1      -2.402   0.520   0.985  1.00  0.00           H  
HETATM   81  H34 UNL     1      -0.620  -0.809   0.463  1.00  0.00           H  
HETATM   82  H35 UNL     1      -0.304   1.236   1.700  1.00  0.00           H  
HETATM   83  H36 UNL     1      -1.222  -2.727   1.724  1.00  0.00           H  
HETATM   84  H37 UNL     1      -0.774  -1.940   3.301  1.00  0.00           H  
HETATM   85  H38 UNL     1       2.789  -4.315   1.434  1.00  0.00           H  
HETATM   86  H39 UNL     1       3.486  -2.696   1.951  1.00  0.00           H  
HETATM   87  H40 UNL     1       3.157  -3.603  -0.911  1.00  0.00           H  
HETATM   88  H41 UNL     1       4.690  -3.672  -0.051  1.00  0.00           H  
HETATM   89  H42 UNL     1       4.188  -1.042   0.455  1.00  0.00           H  
HETATM   90  H43 UNL     1       2.942  -1.258  -0.747  1.00  0.00           H  
HETATM   91  H44 UNL     1       4.404  -1.911  -2.531  1.00  0.00           H  
HETATM   92  H45 UNL     1       6.516  -0.911  -2.571  1.00  0.00           H  
HETATM   93  H46 UNL     1       5.987  -0.304   0.501  1.00  0.00           H  
HETATM   94  H47 UNL     1       6.870   0.667  -0.643  1.00  0.00           H  
HETATM   95  H48 UNL     1       8.230  -0.609   1.007  1.00  0.00           H  
HETATM   96  H49 UNL     1       7.510  -2.830   1.165  1.00  0.00           H  
HETATM   97  H50 UNL     1       7.844  -3.355  -1.628  1.00  0.00           H  
HETATM   98  H51 UNL     1       9.785  -3.001   1.048  1.00  0.00           H  
HETATM   99  H52 UNL     1       9.386  -3.921  -0.427  1.00  0.00           H  
HETATM  100  H53 UNL     1       8.720  -0.647  -2.003  1.00  0.00           H  
HETATM  101  H54 UNL     1      10.240   0.481   0.447  1.00  0.00           H  
HETATM  102  H55 UNL     1       9.409   1.513  -2.271  1.00  0.00           H  
HETATM  103  H56 UNL     1      10.303   3.628  -1.476  1.00  0.00           H  
HETATM  104  H57 UNL     1      11.242   2.609   0.973  1.00  0.00           H  
HETATM  105  H58 UNL     1      12.245   2.264  -2.226  1.00  0.00           H  
HETATM  106  H59 UNL     1      12.356   1.545  -0.536  1.00  0.00           H  
HETATM  107  H60 UNL     1      12.808   3.914   0.311  1.00  0.00           H  
HETATM  108  H61 UNL     1      12.701   4.460  -1.433  1.00  0.00           H  
HETATM  109  H62 UNL     1      14.594   2.993  -2.041  1.00  0.00           H  
HETATM  110  H63 UNL     1      15.092   4.115  -0.749  1.00  0.00           H  
HETATM  111  H64 UNL     1      14.325   1.177  -0.529  1.00  0.00           H  
HETATM  112  H65 UNL     1      15.927   1.921  -0.348  1.00  0.00           H  
HETATM  113  H66 UNL     1      15.449   2.962   1.682  1.00  0.00           H  
HETATM  114  H67 UNL     1      13.663   2.619   1.615  1.00  0.00           H  
HETATM  115  H68 UNL     1      14.837   1.254   1.799  1.00  0.00           H  
CONECT    1    2   48   49   50
CONECT    2    3   51   52
CONECT    3    4   53   54
CONECT    4    5   55   56
CONECT    5    6   57   58
CONECT    6    7   59   60
CONECT    7    8   61   62
CONECT    8    9   63   64
CONECT    9   10   65   66
CONECT   10   11   67   68
CONECT   11   12   69   70
CONECT   12   13   71   72
CONECT   13   14   73   74
CONECT   14   15   75   76
CONECT   15   16   77   78
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   79   80
CONECT   20   21   22   81
CONECT   21   82
CONECT   22   23   83   84
CONECT   23   24
CONECT   24   25   25   26
CONECT   26   27   85   86
CONECT   27   28   87   88
CONECT   28   29   89   90
CONECT   29   30   30   91
CONECT   30   31   92
CONECT   31   32   93   94
CONECT   32   33   38   95
CONECT   33   34   35   96
CONECT   34   97
CONECT   35   36   98   99
CONECT   36   37   37   38
CONECT   38   39  100
CONECT   39   40   40  101
CONECT   40   41  102
CONECT   41   42   43  103
CONECT   42  104
CONECT   43   44  105  106
CONECT   44   45  107  108
CONECT   45   46  109  110
CONECT   46   47  111  112
CONECT   47  113  114  115
END

HMDB0295453
     RDKit          3D
DG(16:0/0:0/PGD2)
115115  0  0  0  0  0  0  0  0999 V2000
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  -14.0638    1.7949    0.1987 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1523    2.0307   -0.9583 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.7603   -0.1053   -0.5112 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
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  1 48  1  0
  1 49  1  0
  1 50  1  0
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 31 93  1  0
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 32 95  1  1
 33 96  1  1
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 35 99  1  0
 38100  1  6
 39101  1  0
 40102  1  0
 41103  1  6
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 43106  1  0
 44107  1  0
 44108  1  0
 45109  1  0
 45110  1  0
 46111  1  0
 46112  1  0
 47113  1  0
 47114  1  0
 47115  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2R)-2-Hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl hexadecanoic acid	Generator

Chemical Formula

C₃₉H₆₈O₈

Average Molecular Weight

664.965

Monoisotopic Molecular Weight

664.49141915

IUPAC Name

(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl hexadecanoate

Traditional Name

(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl hexadecanoate

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C39H68O8/c1-3-5-7-8-9-10-11-12-13-14-15-16-21-25-38(44)46-30-33(41)31-47-39(45)26-22-18-17-20-24-34-35(37(43)29-36(34)42)28-27-32(40)23-19-6-4-2/h17,20,27-28,32-36,40-42H,3-16,18-19,21-26,29-31H2,1-2H3/b20-17-,28-27+/t32-,33+,34+,35+,36-/m0/s1

InChI Key

JSRJBSPRDAWJCO-JRWZAQJCSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	7.49	ALOGPS
logP	8.97	ChemAxon
logS	-6.2	ALOGPS
pKa (Strongest Acidic)	13.47	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	130.36 Å²	ChemAxon
Rotatable Bond Count	32	ChemAxon
Refractivity	190.05 m³·mol⁻¹	ChemAxon
Polarizability	82.02 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	267.454	32859911
AllCCS	[M+H-H2O]+	267.192	32859911
AllCCS	[M+Na]+	267.712	32859911
AllCCS	[M+NH4]+	267.659	32859911
AllCCS	[M-H]-	255.165	32859911
AllCCS	[M+Na-2H]-	260.298	32859911
AllCCS	[M+HCOO]-	266.026	32859911
DeepCCS	[M+H]+	255.779	30932474
DeepCCS	[M-H]-	253.954	30932474
DeepCCS	[M-2H]-	287.194	30932474
DeepCCS	[M+Na]+	261.385	30932474

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(16:0/0:0/PGD2) 10V, Positive-QTOF	splash10-004j-0001009000-8f0bd14653c9df0de056	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(16:0/0:0/PGD2) 20V, Positive-QTOF	splash10-0a6r-2128937000-3e22650ef80cfcaa6f4f	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(16:0/0:0/PGD2) 40V, Positive-QTOF	splash10-05u2-9314110000-390474c80b10667765d6	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(16:0/0:0/PGD2) 10V, Negative-QTOF	splash10-06rt-2029207000-d09e0ce38fa3e116ebf2	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(16:0/0:0/PGD2) 20V, Negative-QTOF	splash10-053u-3029101000-cfeb290d3dac97331877	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(16:0/0:0/PGD2) 40V, Negative-QTOF	splash10-0zmi-8696000000-7429a5255400f48cf1fa	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Diacylglycerol kinase theta

General function:: Involved in diacylglycerol kinase activity
Specific function:: Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:: DGKQ
Uniprot ID:: P52824
Molecular weight:: 101154.0

Enzyme Details

2. Pancreatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Not Available
Gene Name:: PNLIP
Uniprot ID:: P16233
Molecular weight:: 51156.48

Enzyme Details

3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB1
Uniprot ID:: Q9NQ66
Molecular weight:: 138565.805

Enzyme Details

4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:: PLCB4
Uniprot ID:: Q15147
Molecular weight:: 136105.065

Enzyme Details

5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB2
Uniprot ID:: Q00722
Molecular weight:: 134023.21

Enzyme Details

6. Diacylglycerol kinase gamma

General function:: Involved in diacylglycerol kinase activity
Specific function:: Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:: DGKG
Uniprot ID:: P49619
Molecular weight:: 89095.3

Enzyme Details

7. Hepatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:: LIPC
Uniprot ID:: P11150
Molecular weight:: 55914.1

Enzyme Details

8. Lysosomal acid lipase/cholesteryl ester hydrolase

General function:: Involved in lipid metabolic process
Specific function:: Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:: LIPA
Uniprot ID:: P38571
Molecular weight:: 45418.71

Enzyme Details

9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB3
Uniprot ID:: Q01970
Molecular weight:: 138797.725

Enzyme Details

10. Inactive pancreatic lipase-related protein 1

General function:: Involved in catalytic activity
Specific function:: May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:: PNLIPRP1
Uniprot ID:: P54315
Molecular weight:: Not Available

Transporters

Enzyme Details

1. Long-chain fatty acid transport protein 1

General function:: Lipid transport and metabolism
Specific function:: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:: SLC27A1
Uniprot ID:: Q6PCB7
Molecular weight:: 71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Showing metabocard for DG(16:0/0:0/PGD2) (HMDB0295453)

MOL for HMDB0295453 (DG(16:0/0:0/PGD2))

3D MOL for HMDB0295453 (DG(16:0/0:0/PGD2))

3D SDF for HMDB0295453 (DG(16:0/0:0/PGD2))

3D-SDF for HMDB0295453 (DG(16:0/0:0/PGD2))

PDB for HMDB0295453 (DG(16:0/0:0/PGD2))

3D PDB for HMDB0295453 (DG(16:0/0:0/PGD2))

SMILES for HMDB0295453 (DG(16:0/0:0/PGD2))

INCHI for HMDB0295453 (DG(16:0/0:0/PGD2))

Structure for HMDB0295453 (DG(16:0/0:0/PGD2))

3D Structure for HMDB0295453 (DG(16:0/0:0/PGD2))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

MS/MS Spectra

Enzymes

Transporters