Hmdb loader

Showing metabocard for PC(32:0) (HMDB0000564)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (77)transporters (1) Show 78 proteinsXML
enzymes (77)transporters (1) Show 78 proteins
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2005-11-16 15:48:42 UTC
Update Date2023-07-07 20:53:58 UTC
HMDB IDHMDB0000564
Secondary Accession Numbers
  • HMDB0000804
  • HMDB0005250
  • HMDB0007968
  • HMDB00564
  • HMDB00804
  • HMDB05250
  • HMDB07968
Metabolite Identification
Common NamePC(32:0)
DescriptionPC(16:0/16:0) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(16:0/16:0), in particular, consists of two chains of palmitic acid at the C-1 and C-2 positions. The palmitic acid moieties are derived from fish oils, milk fats, vegetable oils and animal fats. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Dipalmitoylphosphatidylcholine (DPPC) is the major constituent of pulmonary surfactant. It is also used for research purposes in studying liposomes, lipid bilayers, and model biological membranes. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.
Structure
Data?1657835202
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0000564 (PC(32:0))

PC(16:0/16:0)
  Mrv1652309042000032D          

 51 50  0  0  1  0            999 V2000
   17.2908  -10.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5855  -10.5973    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.8804  -10.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9959  -10.5973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.1752  -10.5973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.5855  -11.4116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.7012  -10.1901    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.1084  -10.8954    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   18.2941   -9.4849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.4063   -9.7829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.1115  -10.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.8167   -9.7829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.5219  -10.1901    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   21.1147  -10.8954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.1746   -9.3375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2272  -10.5973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3747  -11.1477    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.4607  -10.1849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4607   -9.4134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.7465  -10.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0324  -10.1849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3182  -10.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6041  -10.1849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8899  -10.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.4617  -10.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.7486  -10.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8711  -11.8240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8711  -12.5954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.1570  -11.4109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4428  -11.8240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7287  -11.4109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0145  -11.8240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  4  1  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2 17  1  1  0  0  0
  3  2  1  0  0  0  0
  3  5  1  0  0  0  0
  4  7  1  0  0  0  0
  5 18  1  0  0  0  0
  6 35  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  7 10  1  0  0  0  0
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 18 19  2  0  0  0  0
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 39 40  1  0  0  0  0
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 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
M  CHG  2   8  -1  13   1
M  END
Download

3D MOL for HMDB0000564 (PC(32:0))

HMDB0000564
     RDKit          3D
PC(16:0/16:0)
130129  0  0  0  0  0  0  0  0999 V2000
   -0.9115   -2.5339   -6.2346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8943   -3.7704   -5.3411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2730   -3.3660   -3.9460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2604   -2.3087   -3.4619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1165   -2.8298   -3.4321 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1831   -1.9751   -2.9283 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6396   -0.7240   -3.5454 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6799    0.3618   -3.6731 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2116    1.6565   -4.2064 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3017    2.3457   -3.5449 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1921    2.8528   -2.1627 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9084    1.9046   -1.0571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9541    2.7579    0.2296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6694    1.8543    1.3843 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3018    1.2172    1.3691 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1303    0.3295    2.5732 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1315    0.1300    3.2626 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4239   -1.0687    3.9098 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0113   -2.4880    3.8051 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4532   -2.7128    3.9678 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8860   -2.1691    5.1777 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5453   -2.4067    5.4049 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.7626   -2.4632    6.9160 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0153   -3.8931    4.7747 O   0  0  0  0  0  1  0  0  0  0  0  0
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    5.2549   -1.4818    3.7388 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0526   -0.2780    3.2857 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8862   -0.5916    2.1472 N   0  0  0  0  0  4  0  0  0  0  0  0
    6.9448    0.5515    1.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2248   -0.9491    2.6412 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5494   -2.9827    2.5931 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.6787   -0.5440    0.8091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1563    0.8353    1.1301 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6618    1.3119    2.4763 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.6699    3.7663    1.8866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1457    3.8462    1.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6551    4.9348    0.9330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1495    4.9270    0.9816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5328    5.9866    0.0879 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0344    5.9144    0.1920 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5493   -2.0548   -2.3974 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0304   -1.0081   -4.5930 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5945   -0.4416   -3.0105 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9996    0.0346   -4.5645 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9622    0.4750   -2.8771 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4848    1.5166   -5.2962 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3278    2.3603   -4.2708 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4924    3.2927   -4.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3129    1.8425   -3.6821 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3883    3.6585   -2.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1276    3.4596   -1.9274 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8405    1.6230   -1.1254 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6155    1.0940   -0.9080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9525    3.1850    0.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1749    3.5470    0.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8763    2.3466    2.3722 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4376    1.0259    1.3201 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2011    0.5824    0.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0855   -0.6442    4.9077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5649   -1.0601    3.9817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4897   -3.0234    4.6782 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1135   -2.4458    3.1383 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.2412    1.3628    1.5552 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0144   -0.4865    2.0120 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.4248   -2.6741    1.9607 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1637   -4.5132    1.1899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5965   -3.4759   -0.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  25  -1  29   1
M  END
Download

3D SDF for HMDB0000564 (PC(32:0))

PC(16:0/16:0)
  Mrv1652309042000032D          

 51 50  0  0  1  0            999 V2000
   17.2908  -10.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   17.9959  -10.5973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.1752  -10.5973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   18.7012  -10.1901    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.1084  -10.8954    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
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   19.4063   -9.7829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.1115  -10.1901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   21.5219  -10.1901    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
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 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
M  CHG  2   8  -1  13   1
M  END
> <DATABASE_ID>
HMDB0000564

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C40H80NO8P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-39(42)46-36-38(37-48-50(44,45)47-35-34-41(3,4)5)49-40(43)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h38H,6-37H2,1-5H3/t38-/m1/s1

> <INCHI_KEY>
KILNVBDSWZSGLL-KXQOOQHDSA-N

> <FORMULA>
C40H80NO8P

> <MOLECULAR_WEIGHT>
734.0389

> <EXACT_MASS>
733.562155053

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
130

> <JCHEM_AVERAGE_POLARIZABILITY>
91.99893286015808

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-2,3-bis(hexadecanoyloxy)propyl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
5.29

> <JCHEM_LOGP>
8.11379637919492

> <ALOGPS_LOGS>
-7.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8550572064469137

> <JCHEM_PKA_STRONGEST_BASIC>
-6.744159309169687

> <JCHEM_POLAR_SURFACE_AREA>
111.19

> <JCHEM_REFRACTIVITY>
215.8651

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.40e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-2,3-bis(hexadecanoyloxy)propyl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0000564 (PC(32:0))

HMDB0000564
     RDKit          3D
PC(16:0/16:0)
130129  0  0  0  0  0  0  0  0999 V2000
   -0.9115   -2.5339   -6.2346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8943   -3.7704   -5.3411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2730   -3.3660   -3.9460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2604   -2.3087   -3.4619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1165   -2.8298   -3.4321 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1831   -1.9751   -2.9283 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6396   -0.7240   -3.5454 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6799    0.3618   -3.6731 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2116    1.6565   -4.2064 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3017    2.3457   -3.5449 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1921    2.8528   -2.1627 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9084    1.9046   -1.0571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9541    2.7579    0.2296 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3018    1.2172    1.3691 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5453   -2.4067    5.4049 P   0  0  0  0  0  5  0  0  0  0  0  0
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   -4.1457    3.8462    1.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6551    4.9348    0.9330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1495    4.9270    0.9816 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0344    5.9144    0.1920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1825   -2.8502   -7.2616 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.6748   -4.4809   -5.7610 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0427   -4.3189   -5.3527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2616   -2.8608   -3.9572 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3754   -1.4429   -4.1230 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9260   -1.7854   -1.8018 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0919   -2.6813   -2.7479 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0304   -1.0081   -4.5930 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9996    0.0346   -4.5645 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4848    1.5166   -5.2962 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3278    2.3603   -4.2708 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4924    3.2927   -4.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3129    1.8425   -3.6821 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3883    3.6585   -2.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1276    3.4596   -1.9274 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8405    1.6230   -1.1254 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6155    1.0940   -0.9080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9525    3.1850    0.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1749    3.5470    0.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8763    2.3466    2.3722 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4376    1.0259    1.3201 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4829    1.9595    1.4174 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2011    0.5824    0.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0855   -0.6442    4.9077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5649   -1.0601    3.9817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4897   -3.0234    4.6782 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1135   -2.4458    3.1383 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6232   -3.8524    4.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9779   -2.2727    4.0163 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6264   -1.8598    2.9083 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4090    0.5843    3.0203 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7166    0.0528    4.1078 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9876    0.9735    1.2259 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7123    0.2759    0.2080 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2412    1.3628    1.5552 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0144   -0.4865    2.0120 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3513   -0.5444    3.6790 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3769   -2.0371    2.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4248   -2.6741    1.9607 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0569   -1.8466    0.5204 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3818   -1.4830    1.0021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6634   -5.4192    0.9182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1637   -4.5132    1.1899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5965   -3.4759   -0.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1931   -3.8455   -0.8371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9416   -1.4637   -0.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7306   -1.5757    1.1876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1900   -2.3479   -0.5241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1206   -2.7321    1.2102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6622   -0.3338    1.6594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8509    0.0679   -0.0702 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1042   -1.2719    1.5320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0609   -0.7942   -0.2137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2602    0.9224    1.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7860    1.5515    0.3513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0734    0.6166    3.2335 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5373    1.3087    2.4830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7581    2.9394    3.8447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2366    2.7088    2.8536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0250    4.7319    2.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0179    3.6014    0.8506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7127    2.8983    1.5111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7566    4.0907    2.8884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0441    5.9345    1.2605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0468    4.7240   -0.0815 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8457    5.1589    2.0323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7747    3.9187    0.7538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8643    6.9867    0.4157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8424    5.8559   -0.9718 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3932    5.5299   -0.7646 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2921    5.2030    0.9908 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3510    6.9319    0.3968 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 23 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 29 31  1  0
 29 32  1  0
 20 33  1  0
 33 34  1  0
 34 35  2  0
 34 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  1  0
  1 51  1  0
  1 52  1  0
  1 53  1  0
  2 54  1  0
  2 55  1  0
  3 56  1  0
  3 57  1  0
  4 58  1  0
  4 59  1  0
  5 60  1  0
  5 61  1  0
  6 62  1  0
  6 63  1  0
  7 64  1  0
  7 65  1  0
  8 66  1  0
  8 67  1  0
  9 68  1  0
  9 69  1  0
 10 70  1  0
 10 71  1  0
 11 72  1  0
 11 73  1  0
 12 74  1  0
 12 75  1  0
 13 76  1  0
 13 77  1  0
 14 78  1  0
 14 79  1  0
 15 80  1  0
 15 81  1  0
 19 82  1  0
 19 83  1  0
 20 84  1  1
 21 85  1  0
 21 86  1  0
 27 87  1  0
 27 88  1  0
 28 89  1  0
 28 90  1  0
 30 91  1  0
 30 92  1  0
 30 93  1  0
 31 94  1  0
 31 95  1  0
 31 96  1  0
 32 97  1  0
 32 98  1  0
 32 99  1  0
 36100  1  0
 36101  1  0
 37102  1  0
 37103  1  0
 38104  1  0
 38105  1  0
 39106  1  0
 39107  1  0
 40108  1  0
 40109  1  0
 41110  1  0
 41111  1  0
 42112  1  0
 42113  1  0
 43114  1  0
 43115  1  0
 44116  1  0
 44117  1  0
 45118  1  0
 45119  1  0
 46120  1  0
 46121  1  0
 47122  1  0
 47123  1  0
 48124  1  0
 48125  1  0
 49126  1  0
 49127  1  0
 50128  1  0
 50129  1  0
 50130  1  0
M  CHG  2  25  -1  29   1
M  END
Download

PDB for HMDB0000564 (PC(32:0))

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PC(16:0/16:0)                                     
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  C   UNK     0      32.276 -19.022   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      30.960 -19.782   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      29.643 -19.022   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      33.592 -19.782   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      28.327 -19.782   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      30.960 -21.302   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      34.909 -19.022   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      35.669 -20.338   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0      34.149 -17.705   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      36.225 -18.261   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      37.541 -19.022   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      38.858 -18.261   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      40.174 -19.022   0.000  0.00  0.00           N+1
HETATM   14  C   UNK     0      39.414 -20.338   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      41.393 -17.430   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      41.491 -19.782   0.000  0.00  0.00           C+0
HETATM   17  H   UNK     0      32.433 -20.809   0.000  0.00  0.00           H+0
HETATM   18  C   UNK     0      26.993 -19.012   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      26.993 -17.572   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      25.660 -19.783   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      24.327 -19.012   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      22.994 -19.783   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      21.661 -19.012   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      20.328 -19.783   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      18.995 -19.012   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      17.662 -19.783   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      16.329 -19.012   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      14.996 -19.783   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.663 -19.012   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      12.330 -19.783   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.997 -19.012   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.663 -19.783   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       8.330 -19.012   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.997 -19.783   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      29.626 -22.071   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      29.626 -23.511   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      28.293 -21.300   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      26.960 -22.071   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      25.627 -21.300   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      24.294 -22.071   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      22.961 -21.300   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      21.628 -22.071   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      20.295 -21.300   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      18.962 -22.071   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      17.629 -21.300   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      16.295 -22.071   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      14.962 -21.300   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      13.629 -22.071   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      12.296 -21.300   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      10.963 -22.071   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       9.630 -21.300   0.000  0.00  0.00           C+0
CONECT    1    4    2                                                       
CONECT    2    1    6   17    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   18                                                       
CONECT    6    2   35                                                       
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17    2                                                            
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33                                                            
CONECT   35    6   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  100    0
END
Download

3D PDB for HMDB0000564 (PC(32:0))

COMPND    HMDB0000564
HETATM    1  C1  UNL     1      -0.912  -2.534  -6.235  1.00  0.00           C  
HETATM    2  C2  UNL     1      -0.894  -3.770  -5.341  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.273  -3.366  -3.946  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.260  -2.309  -3.462  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.117  -2.830  -3.432  1.00  0.00           C  
HETATM    6  C6  UNL     1       2.183  -1.975  -2.928  1.00  0.00           C  
HETATM    7  C7  UNL     1       2.640  -0.724  -3.545  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.680   0.362  -3.673  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.212   1.657  -4.206  1.00  0.00           C  
HETATM   10  C10 UNL     1       3.302   2.346  -3.545  1.00  0.00           C  
HETATM   11  C11 UNL     1       3.192   2.853  -2.163  1.00  0.00           C  
HETATM   12  C12 UNL     1       2.908   1.905  -1.057  1.00  0.00           C  
HETATM   13  C13 UNL     1       2.954   2.758   0.230  1.00  0.00           C  
HETATM   14  C14 UNL     1       2.669   1.854   1.384  1.00  0.00           C  
HETATM   15  C15 UNL     1       1.302   1.217   1.369  1.00  0.00           C  
HETATM   16  C16 UNL     1       1.130   0.329   2.573  1.00  0.00           C  
HETATM   17  O1  UNL     1       2.132   0.130   3.263  1.00  0.00           O  
HETATM   18  O2  UNL     1      -0.056  -0.223   2.891  1.00  0.00           O  
HETATM   19  C17 UNL     1      -0.424  -1.069   3.910  1.00  0.00           C  
HETATM   20  C18 UNL     1       0.011  -2.488   3.805  1.00  0.00           C  
HETATM   21  C19 UNL     1       1.453  -2.713   3.968  1.00  0.00           C  
HETATM   22  O3  UNL     1       1.886  -2.169   5.178  1.00  0.00           O  
HETATM   23  P1  UNL     1       3.545  -2.407   5.405  1.00  0.00           P  
HETATM   24  O4  UNL     1       3.763  -2.463   6.916  1.00  0.00           O  
HETATM   25  O5  UNL     1       4.015  -3.893   4.775  1.00  0.00           O1-
HETATM   26  O6  UNL     1       4.476  -1.133   4.826  1.00  0.00           O  
HETATM   27  C20 UNL     1       5.255  -1.482   3.739  1.00  0.00           C  
HETATM   28  C21 UNL     1       6.053  -0.278   3.286  1.00  0.00           C  
HETATM   29  N1  UNL     1       6.886  -0.592   2.147  1.00  0.00           N1+
HETATM   30  C22 UNL     1       6.945   0.551   1.275  1.00  0.00           C  
HETATM   31  C23 UNL     1       8.225  -0.949   2.641  1.00  0.00           C  
HETATM   32  C24 UNL     1       6.387  -1.720   1.397  1.00  0.00           C  
HETATM   33  O7  UNL     1      -0.549  -2.983   2.593  1.00  0.00           O  
HETATM   34  C25 UNL     1      -1.505  -3.957   2.496  1.00  0.00           C  
HETATM   35  O8  UNL     1      -1.927  -4.481   3.554  1.00  0.00           O  
HETATM   36  C26 UNL     1      -2.067  -4.425   1.199  1.00  0.00           C  
HETATM   37  C27 UNL     1      -1.681  -3.474   0.075  1.00  0.00           C  
HETATM   38  C28 UNL     1      -2.202  -2.081   0.343  1.00  0.00           C  
HETATM   39  C29 UNL     1      -3.722  -2.052   0.436  1.00  0.00           C  
HETATM   40  C30 UNL     1      -4.187  -0.628   0.737  1.00  0.00           C  
HETATM   41  C31 UNL     1      -5.679  -0.544   0.809  1.00  0.00           C  
HETATM   42  C32 UNL     1      -6.156   0.835   1.130  1.00  0.00           C  
HETATM   43  C33 UNL     1      -5.662   1.312   2.476  1.00  0.00           C  
HETATM   44  C34 UNL     1      -6.123   2.686   2.819  1.00  0.00           C  
HETATM   45  C35 UNL     1      -5.670   3.766   1.887  1.00  0.00           C  
HETATM   46  C36 UNL     1      -4.146   3.846   1.856  1.00  0.00           C  
HETATM   47  C37 UNL     1      -3.655   4.935   0.933  1.00  0.00           C  
HETATM   48  C38 UNL     1      -2.150   4.927   0.982  1.00  0.00           C  
HETATM   49  C39 UNL     1      -1.533   5.987   0.088  1.00  0.00           C  
HETATM   50  C40 UNL     1      -0.034   5.914   0.192  1.00  0.00           C  
HETATM   51  H1  UNL     1      -1.182  -2.850  -7.262  1.00  0.00           H  
HETATM   52  H2  UNL     1      -1.644  -1.801  -5.885  1.00  0.00           H  
HETATM   53  H3  UNL     1       0.100  -2.097  -6.265  1.00  0.00           H  
HETATM   54  H4  UNL     1      -1.675  -4.481  -5.761  1.00  0.00           H  
HETATM   55  H5  UNL     1       0.043  -4.319  -5.353  1.00  0.00           H  
HETATM   56  H6  UNL     1      -2.262  -2.861  -3.957  1.00  0.00           H  
HETATM   57  H7  UNL     1      -1.253  -4.214  -3.245  1.00  0.00           H  
HETATM   58  H8  UNL     1      -0.549  -2.055  -2.397  1.00  0.00           H  
HETATM   59  H9  UNL     1      -0.375  -1.443  -4.123  1.00  0.00           H  
HETATM   60  H10 UNL     1       1.417  -3.298  -4.429  1.00  0.00           H  
HETATM   61  H11 UNL     1       1.111  -3.761  -2.757  1.00  0.00           H  
HETATM   62  H12 UNL     1       1.926  -1.785  -1.802  1.00  0.00           H  
HETATM   63  H13 UNL     1       3.092  -2.681  -2.748  1.00  0.00           H  
HETATM   64  H14 UNL     1       3.030  -1.008  -4.593  1.00  0.00           H  
HETATM   65  H15 UNL     1       3.595  -0.442  -3.010  1.00  0.00           H  
HETATM   66  H16 UNL     1       1.000   0.035  -4.565  1.00  0.00           H  
HETATM   67  H17 UNL     1       0.962   0.475  -2.877  1.00  0.00           H  
HETATM   68  H18 UNL     1       2.485   1.517  -5.296  1.00  0.00           H  
HETATM   69  H19 UNL     1       1.328   2.360  -4.271  1.00  0.00           H  
HETATM   70  H20 UNL     1       3.492   3.293  -4.169  1.00  0.00           H  
HETATM   71  H21 UNL     1       4.313   1.842  -3.682  1.00  0.00           H  
HETATM   72  H22 UNL     1       2.388   3.658  -2.080  1.00  0.00           H  
HETATM   73  H23 UNL     1       4.128   3.460  -1.927  1.00  0.00           H  
HETATM   74  H24 UNL     1       1.841   1.623  -1.125  1.00  0.00           H  
HETATM   75  H25 UNL     1       3.616   1.094  -0.908  1.00  0.00           H  
HETATM   76  H26 UNL     1       3.953   3.185   0.367  1.00  0.00           H  
HETATM   77  H27 UNL     1       2.175   3.547   0.168  1.00  0.00           H  
HETATM   78  H28 UNL     1       2.876   2.347   2.372  1.00  0.00           H  
HETATM   79  H29 UNL     1       3.438   1.026   1.320  1.00  0.00           H  
HETATM   80  H30 UNL     1       0.483   1.959   1.417  1.00  0.00           H  
HETATM   81  H31 UNL     1       1.201   0.582   0.463  1.00  0.00           H  
HETATM   82  H32 UNL     1      -0.086  -0.644   4.908  1.00  0.00           H  
HETATM   83  H33 UNL     1      -1.565  -1.060   3.982  1.00  0.00           H  
HETATM   84  H34 UNL     1      -0.490  -3.023   4.678  1.00  0.00           H  
HETATM   85  H35 UNL     1       2.114  -2.446   3.138  1.00  0.00           H  
HETATM   86  H36 UNL     1       1.623  -3.852   4.155  1.00  0.00           H  
HETATM   87  H37 UNL     1       5.978  -2.273   4.016  1.00  0.00           H  
HETATM   88  H38 UNL     1       4.626  -1.860   2.908  1.00  0.00           H  
HETATM   89  H39 UNL     1       5.409   0.584   3.020  1.00  0.00           H  
HETATM   90  H40 UNL     1       6.717   0.053   4.108  1.00  0.00           H  
HETATM   91  H41 UNL     1       7.988   0.974   1.226  1.00  0.00           H  
HETATM   92  H42 UNL     1       6.712   0.276   0.208  1.00  0.00           H  
HETATM   93  H43 UNL     1       6.241   1.363   1.555  1.00  0.00           H  
HETATM   94  H44 UNL     1       9.014  -0.487   2.012  1.00  0.00           H  
HETATM   95  H45 UNL     1       8.351  -0.544   3.679  1.00  0.00           H  
HETATM   96  H46 UNL     1       8.377  -2.037   2.656  1.00  0.00           H  
HETATM   97  H47 UNL     1       6.425  -2.674   1.961  1.00  0.00           H  
HETATM   98  H48 UNL     1       7.057  -1.847   0.520  1.00  0.00           H  
HETATM   99  H49 UNL     1       5.382  -1.483   1.002  1.00  0.00           H  
HETATM  100  H50 UNL     1      -1.663  -5.419   0.918  1.00  0.00           H  
HETATM  101  H51 UNL     1      -3.164  -4.513   1.190  1.00  0.00           H  
HETATM  102  H52 UNL     1      -0.596  -3.476  -0.138  1.00  0.00           H  
HETATM  103  H53 UNL     1      -2.193  -3.845  -0.837  1.00  0.00           H  
HETATM  104  H54 UNL     1      -1.942  -1.464  -0.557  1.00  0.00           H  
HETATM  105  H55 UNL     1      -1.731  -1.576   1.188  1.00  0.00           H  
HETATM  106  H56 UNL     1      -4.190  -2.348  -0.524  1.00  0.00           H  
HETATM  107  H57 UNL     1      -4.121  -2.732   1.210  1.00  0.00           H  
HETATM  108  H58 UNL     1      -3.662  -0.334   1.659  1.00  0.00           H  
HETATM  109  H59 UNL     1      -3.851   0.068  -0.070  1.00  0.00           H  
HETATM  110  H60 UNL     1      -6.104  -1.272   1.532  1.00  0.00           H  
HETATM  111  H61 UNL     1      -6.061  -0.794  -0.214  1.00  0.00           H  
HETATM  112  H62 UNL     1      -7.260   0.922   1.128  1.00  0.00           H  
HETATM  113  H63 UNL     1      -5.786   1.551   0.351  1.00  0.00           H  
HETATM  114  H64 UNL     1      -6.073   0.617   3.234  1.00  0.00           H  
HETATM  115  H65 UNL     1      -4.537   1.309   2.483  1.00  0.00           H  
HETATM  116  H66 UNL     1      -5.758   2.939   3.845  1.00  0.00           H  
HETATM  117  H67 UNL     1      -7.237   2.709   2.854  1.00  0.00           H  
HETATM  118  H68 UNL     1      -6.025   4.732   2.293  1.00  0.00           H  
HETATM  119  H69 UNL     1      -6.018   3.601   0.851  1.00  0.00           H  
HETATM  120  H70 UNL     1      -3.713   2.898   1.511  1.00  0.00           H  
HETATM  121  H71 UNL     1      -3.757   4.091   2.888  1.00  0.00           H  
HETATM  122  H72 UNL     1      -4.044   5.934   1.261  1.00  0.00           H  
HETATM  123  H73 UNL     1      -4.047   4.724  -0.081  1.00  0.00           H  
HETATM  124  H74 UNL     1      -1.846   5.159   2.032  1.00  0.00           H  
HETATM  125  H75 UNL     1      -1.775   3.919   0.754  1.00  0.00           H  
HETATM  126  H76 UNL     1      -1.864   6.987   0.416  1.00  0.00           H  
HETATM  127  H77 UNL     1      -1.842   5.856  -0.972  1.00  0.00           H  
HETATM  128  H78 UNL     1       0.393   5.530  -0.765  1.00  0.00           H  
HETATM  129  H79 UNL     1       0.292   5.203   0.991  1.00  0.00           H  
HETATM  130  H80 UNL     1       0.351   6.932   0.397  1.00  0.00           H  
CONECT    1    2   51   52   53
CONECT    2    3   54   55
CONECT    3    4   56   57
CONECT    4    5   58   59
CONECT    5    6   60   61
CONECT    6    7   62   63
CONECT    7    8   64   65
CONECT    8    9   66   67
CONECT    9   10   68   69
CONECT   10   11   70   71
CONECT   11   12   72   73
CONECT   12   13   74   75
CONECT   13   14   76   77
CONECT   14   15   78   79
CONECT   15   16   80   81
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   82   83
CONECT   20   21   33   84
CONECT   21   22   85   86
CONECT   22   23
CONECT   23   24   24   25   26
CONECT   26   27
CONECT   27   28   87   88
CONECT   28   29   89   90
CONECT   29   30   31   32
CONECT   30   91   92   93
CONECT   31   94   95   96
CONECT   32   97   98   99
CONECT   33   34
CONECT   34   35   35   36
CONECT   36   37  100  101
CONECT   37   38  102  103
CONECT   38   39  104  105
CONECT   39   40  106  107
CONECT   40   41  108  109
CONECT   41   42  110  111
CONECT   42   43  112  113
CONECT   43   44  114  115
CONECT   44   45  116  117
CONECT   45   46  118  119
CONECT   46   47  120  121
CONECT   47   48  122  123
CONECT   48   49  124  125
CONECT   49   50  126  127
CONECT   50  128  129  130
END
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SMILES for HMDB0000564 (PC(32:0))

[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC
Download

INCHI for HMDB0000564 (PC(32:0))

InChI=1S/C40H80NO8P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-39(42)46-36-38(37-48-50(44,45)47-35-34-41(3,4)5)49-40(43)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h38H,6-37H2,1-5H3/t38-/m1/s1
Download
View in JSmolView Stereo Labels
Synonyms
ValueSource
1,2-Bis(hexadecanoyl)-sn-glycero-3-phosphocholineChEBI
1,2-Dipalmitoyl-L-lecithinChEBI
1,2-Dipalmitoyl-sn-glycero-3-phosphatidylcholineChEBI
1,2-Dipalmitoyl-sn-glycero-3-phosphocholineChEBI
1,2-DipalmitoylphosphatidylcholineChEBI
1-16:0-2-16:0-PhosphatidylcholineChEBI
16:0-16:0-PCChEBI
Colfosceril palmitateChEBI
Colfoscerili palmitasChEBI
Dipalmitoyl phosphatidylcholineChEBI
Dipalmitoyl-GPCChEBI
DipalmitoylphosphatidylcholineChEBI
GPC(16:0/16:0)ChEBI
GPCho 16:0/16:0ChEBI
GPCho(16:0/16:0)ChEBI
Palmitate de colfoscerilChEBI
Palmitato de colfosceriloChEBI
PC 16:0/16:0ChEBI
PC(32:0)ChEBI
Phosphatidylcholine 16:0/16:0ChEBI
Phosphatidylcholine(16:0/16:0)ChEBI
Phosphatidylcholine(32:0)ChEBI
Colfosceril palmitic acidGenerator
Palmitic acid de colfoscerilGenerator
1,2-Dipalmitoyl-rac-glycero-3-phosphocholineHMDB
LecithinHMDB
1,2-Dihexadecanoyl-rac-glycero-3-phosphocholineHMDB
GPCho(32:0)HMDB
(R)-4-Hydroxy-N,N,N-trimethyl-10-oxo-7-[(1-oxohexadecyl)oxy]-3,5,9-trioxa-4-phosphapentacosan-1-aminium 4-oxide hydroxide inner saltHMDB
(R)-4-Hydroxy-N,N,N-trimethyl-10-oxo-7-[(1-oxohexadecyl)oxy]-3,5,9-trioxa-4-phosphapentacosan-1-aminium 4-oxide inner saltHMDB
1,2-Bis(palmitoyl)-sn-glycero-3-phosphocholineHMDB
1,2-Dihexadecanoyl-sn-glycerol-3-phosphorylcholineHMDB
1,2-Dipalmitoyl-3-sn-phosphatidylcholineHMDB
1,2-Dipalmitoyl-L-3-phosphatidylcholineHMDB
1,2-Dipalmitoyl-L-a-lecithinHMDB
1,2-Dipalmitoyl-L-a-phosphatidylcholineHMDB
1,2-Dipalmitoyl-L-alpha-lecithinHMDB
1,2-Dipalmitoyl-L-alpha-phosphatidylcholineHMDB
1,2-Dipalmitoyl-L-phosphatidylcholineHMDB
1,2-Dipalmitoyl-sn-3-glycerophosphocholineHMDB
1,2-Dipalmitoyl-sn-glycero-3-phosphorylcholineHMDB
1,2-Dipalmitoyl-sn-glycerol-3-phosphocholineHMDB
1,2-Dipalmitoyl-sn-glycerophosphocholineHMDB
1,2-Dipalmitoyl-sn-glycerophosphorylcholineHMDB
1,2-Dipalmitoyl-sn-glyceryl-3-phosphocholineHMDB
1,2-Dipalmitoyl-sn-phosphatidylcholineHMDB
1,2-Dipalmitoylglycero-3-phosphocholineHMDB
1,2-L-a-DipalmitoylphosphatidylcholineHMDB
1,2-L-alpha-DipalmitoylphosphatidylcholineHMDB
b,g-Dipalmitoyl L-a-phosphatidylcholineHMDB
b,g-Dipalmitoyl L-alpha-phosphatidylcholineHMDB
b,g-Dipalmitoyl-L-(a)-lecithinHMDB
b,g-Dipalmitoyl-L-phosphatidylcholineHMDB
Dihexadecanoyl-sn-glycero-3-phosphocholineHMDB
Dipalmitoyl L-a-phosphatidylcholineHMDB
Dipalmitoyl L-alpha-phosphatidylcholineHMDB
Dipalmitoyl-L-3-glycerylphosphorylcholineHMDB
Dipalmitoyl-L-a-lecithinHMDB
Dipalmitoyl-L-a-phosphatidylcholineHMDB
Dipalmitoyl-L-alpha-lecithinHMDB
Dipalmitoyl-L-alpha-phosphatidylcholineHMDB
Dipalmitoyl-sn-3-phosphatidylcholineHMDB
DPPCHMDB
L-1,2-Dipalmitoyl-a-lecithinHMDB
L-1,2-Dipalmitoyl-alpha-lecithinHMDB
L-1,2-DipalmitoylphosphatidylcholineHMDB
L-a-1,2-Dipalmitoyl lecithinHMDB
L-a-DipalmitoylecithinHMDB
L-a-DipalmitoyllecithinHMDB
L-a-DipalmitoylphosphatidylcholineHMDB
L-a-DPPCHMDB
L-alpha-1,2-Dipalmitoyl lecithinHMDB
L-alpha-DipalmitoylecithinHMDB
L-alpha-DipalmitoyllecithinHMDB
L-alpha-DipalmitoylphosphatidylcholineHMDB
L-alpha-DPPCHMDB
L-b,g-Dipalmitoyl-a-lecithinHMDB
L-b,g-Dipalmitoyl-a-phosphatidylcholineHMDB
L-b,g-Dipalmitoyl-alpha-lecithinHMDB
L-b,g-Dipalmitoyl-alpha-phosphatidylcholineHMDB
L-b,g-DipalmitoylphosphatidylcholineHMDB
L-Dipalmitoyl lecithinHMDB
L-DPPCHMDB
PC Aa C32:0HMDB
sn-3-DipalmitoyllecithinHMDB
1,2-Dipalmitoyl-GPCHMDB
PC(16:0/16:0)Lipid Annotator
1,2-Distearoyl-glycero-3-phosphocholineHMDB
Chemical FormulaC40H80NO8P
Average Molecular Weight734.0389
Monoisotopic Molecular Weight733.562155053
IUPAC Name(2-{[(2R)-2,3-bis(hexadecanoyloxy)propyl phosphono]oxy}ethyl)trimethylazanium
Traditional Name(2-{[(2R)-2,3-bis(hexadecanoyloxy)propyl phosphono]oxy}ethyl)trimethylazanium
CAS Registry Number63-89-8
SMILES
[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC
InChI Identifier
InChI=1S/C40H80NO8P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-39(42)46-36-38(37-48-50(44,45)47-35-34-41(3,4)5)49-40(43)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h38H,6-37H2,1-5H3/t38-/m1/s1
InChI KeyKILNVBDSWZSGLL-KXQOOQHDSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylcholines. These are glycerophosphocholines in which the two free -OH are attached to one fatty acid each through an ester linkage.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct ParentPhosphatidylcholines
Alternative Parents
Substituents
  • Diacylglycero-3-phosphocholine
  • Phosphocholine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Amine
  • Organic salt
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effect
Health effectOrganoleptic effect
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M+H]+MetCCS_train_pos285.4730932474
[M+H]+Not Available286.588http://allccs.zhulab.cn/database/detail?ID=AllCCS00000445
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.4e-05 g/LALOGPS
logP5.29ALOGPS
logP8.11ChemAxon
logS-7.5ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-6.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area111.19 ŲChemAxon
Rotatable Bond Count40ChemAxon
Refractivity215.87 m³·mol⁻¹ChemAxon
Polarizability92 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+290.232859911
AllCCS[M-H]-279.39732859911
DeepCCS[M+H]+282.14530932474
DeepCCS[M-H]-279.44230932474
DeepCCS[M-2H]-313.5630932474
DeepCCS[M+Na]+289.46230932474
AllCCS[M+H]+290.232859911
AllCCS[M+H-H2O]+290.132859911
AllCCS[M+NH4]+290.332859911
AllCCS[M+Na]+290.332859911
AllCCS[M-H]-279.432859911
AllCCS[M+Na-2H]-283.032859911
AllCCS[M+HCOO]-286.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PC(16:0/16:0)[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC4612.2Standard polar33892256
PC(16:0/16:0)[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC4144.5Standard non polar33892256
PC(16:0/16:0)[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC4760.8Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) IT 40V, negative-QTOFsplash10-066r-0060100900-b6bff2ff205808890e0b2020-07-21HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) QqQ 1V, positive-QTOFsplash10-001i-0900000000-455598e8d7de92b66a2d2020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) QqQ 1V, positive-QTOFsplash10-0udi-0000290000-79bb58a12a550b7285842020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) IT 30V, positive-QTOFsplash10-001i-0900000400-ed1d6ef09691e9bb1b3e2020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) n/a 51V, positive-QTOFsplash10-001i-0000000900-012345aef55bfeb672012020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) n/a 51V, positive-QTOFsplash10-004j-0000900000-208fe5d1fc5dcb9e17872020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) n/a 51V, positive-QTOFsplash10-0002-0000029000-0cc983f3015a15000bcb2020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 23V, positive-QTOFsplash10-001r-0000000900-fa22d7b44b6ecf7bf3cb2020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 33V, positive-QTOFsplash10-001i-0500000900-6608b50815a9b5d35f042020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 51V, positive-QTOFsplash10-001i-0900000000-9afadd11d3d3f123032d2020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 68V, positive-QTOFsplash10-001i-2900000000-ce1e31a52e9cb1245e692020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 85V, positive-QTOFsplash10-001r-4900000000-d399948e3d53f292acf42020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 124V, positive-QTOFsplash10-0079-9800000000-58fcb9ea0920120df2542020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 137V, positive-QTOFsplash10-0079-9700000000-1bd1b9fb29d82e116b292020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 162V, positive-QTOFsplash10-007a-9600000000-f4a52586e5510140e9942020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 189V, positive-QTOFsplash10-0072-9400000000-494bd7a2e515e6c62d172020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 223V, positive-QTOFsplash10-0002-9100000000-548cf59f4be7b55dd9422020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 258V, positive-QTOFsplash10-0002-9000000000-852b94593bcfb0db899c2020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) Orbitrap 309V, positive-QTOFsplash10-0002-9000000000-1c426c57d21ff7447e742020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) n/a 51V, positive-QTOFsplash10-002k-0000900200-dfdc7f3a135b074862482020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) n/a 51V, positive-QTOFsplash10-014i-0000900000-875312e72ac68920d8df2020-07-22HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - PC(32:0) n/a 51V, positive-QTOFsplash10-01q9-0980000000-e120b0535f2910e5dbe82020-07-22HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(32:0) 10V, Positive-QTOFsplash10-001i-0000000900-e904df388d2d70397c9f2017-10-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(32:0) 20V, Positive-QTOFsplash10-001i-0600000900-18b2f9e577dc5a9bfcb82017-10-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(32:0) 40V, Positive-QTOFsplash10-001i-1900211200-e76cb9b9e105ad69b5702017-10-04Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Experimental 2D NMR[1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, CDCl3, experimental)2012-12-05Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
  • Feces
  • Saliva
  • Urine
Tissue Locations
  • Placenta
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified584.557 +/- 134.506 uMAdult (>18 years old)BothNormal details
BloodDetected and Quantified13.6 (11.8-15.7) uMInfant (0-1 year old)Not Available
Normal		 details
BloodDetected and Quantified13.87 (0.11-42.20) uMAdolescent (13-18 years old)Both
Normal		 details
BloodDetected and Quantified8.50-30.0 uMAdult (>18 years old)BothNormal details
BloodDetected and Quantified15.3 (12.7-18.3) uMNewborn (0-30 days old)Not Available
Normal		 details
BloodDetected and Quantified15.1 +/- 3.01 uMAdult (>18 years old)BothNormal details
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal		 details
FecesDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal		 details
SalivaDetected and Quantified0.198 +/- 0.349 uMAdult (>18 years old)Both
Normal
    • Zerihun T. Dame, ...
 details
UrineDetected and Quantified0.0035 (0.0013-0.0071) umol/mmol creatinineAdult (>18 years old)Both
Normal		 details
UrineDetected and Quantified0.0038 +/- 0.0081 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Normal
    • Analysis of 30 no...
 details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified17.85 (12.57-49.03) uMAdolescent (13-18 years old)Both
Pain or fever		 details
BloodDetected and Quantified11.830 (10.249) uMAdult (>18 years old)FemalePregnancy with fetus having congenital heart defect details
BloodDetected and Quantified21.468 (6.561) uMAdult (>18 years old)FemalePregnancy details
BloodDetected and Quantified20.56 (12.79-46.67) uMAdolescent (13-18 years old)Both
Acetaminophen overdose		 details
BloodDetected and Quantified10.6 +/- 2.7 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
BloodDetected and Quantified12.5 +/- 3.2 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
FecesDetected but not QuantifiedNot QuantifiedNewborn (0-30 days old)Not Specified
Premature neonates		 details
UrineDetected and Quantified0.0026 +/- 0.0025 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Eosinophilic esophagitis
    • Analysis of 30 no...
 details
UrineDetected and Quantified0.0035 +/- 0.0065 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Gastroesophageal reflux disease
    • Analysis of 30 no...
 details
Predicted Concentrations
BiospecimenValueOriginal ageOriginal sexOriginal conditionComments
Blood214.738 +/- 57.817 uMAdult (>18 years old)BothNormal (Most Probable)Calculated using MetaboAnalyst
Blood584.550 +/- 134.486 uMAdult (>18 years old)BothNormal (Upper Limit)Calculated using MetaboAnalyst
Associated Disorders and Diseases
Disease References
Pregnancy
  1. Bahado-Singh RO, Ertl R, Mandal R, Bjorndahl TC, Syngelaki A, Han B, Dong E, Liu PB, Alpay-Savasan Z, Wishart DS, Nicolaides KH: Metabolomic prediction of fetal congenital heart defect in the first trimester. Am J Obstet Gynecol. 2014 Sep;211(3):240.e1-240.e14. doi: 10.1016/j.ajog.2014.03.056. Epub 2014 Apr 1. [PubMed:24704061 ]
Obesity
  1. Simone Wahl, Christina Holzapfel, Zhonghao Yu, Michaela Breier, Ivan Kondofersky, Christiane Fuchs, Paula Singmann, Cornelia Prehn, Jerzy Adamski, Harald Grallert, Thomas Illig, Rui Wang-Sattler, Thomas Reinehr (2013). Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children. Metabolomics.
Eosinophilic esophagitis
  1. Slae, M., Huynh, H., Wishart, D.S. (2014). Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work). NA.
Associated OMIM IDs
DrugBank IDDB09114
Phenol Explorer Compound IDNot Available
FooDB IDFDB022121
KNApSAcK IDNot Available
Chemspider ID398235
KEGG Compound IDC00157
BioCyc ID1-2-DIPALMITOYLPHOSPHATIDYLCHOLINE
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN ID5548
PubChem Compound452110
PDB IDNot Available
ChEBI ID72999
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceBouirig, H.; Eloy, D.; Jardon, P. Formation and reactivity of the singlet oxygen photosensitized by hypericin in the liposomes of dipalmitoylphosphatidylcholine. Evidence of delayed oxidation. Journal de Chimie Physique et de Physico-Chimie Biologique (1992), 89(6), 1391-411.
Material Safety Data Sheet (MSDS)Download (PDF)
General References
  1. Elshenawy S, Pinney SE, Stuart T, Doulias PT, Zura G, Parry S, Elovitz MA, Bennett MJ, Bansal A, Strauss JF 3rd, Ischiropoulos H, Simmons RA: The Metabolomic Signature of the Placenta in Spontaneous Preterm Birth. Int J Mol Sci. 2020 Feb 4;21(3). pii: ijms21031043. doi: 10.3390/ijms21031043. [PubMed:32033212 ]

Only showing the first 10 proteins. There are 78 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Acyl-protein thioesterase 1
General function:
Involved in hydrolase activity
Specific function:
Hydrolyzes fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has depalmitoylating activity and also low lysophospholipase activity.
Gene Name:
LYPLA1
Uniprot ID:
O75608
Molecular weight:
24669.355
Enzyme Details
2. Group XV phospholipase A2
General function:
Involved in phosphatidylcholine-sterol O-acyltransferase activity
Specific function:
Has transacylase and calcium-independent phospholipase A2 activity. Catalyzes the formation of 1-O-acyl-N-acetylsphingosine and the concomitant release of a lyso-phospholipid (By similarity). May have weak lysophospholipase activity.
Gene Name:
PLA2G15
Uniprot ID:
Q8NCC3
Molecular weight:
Not Available
Enzyme Details
3. Calcium-dependent phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. This isozyme hydrolyzes more efficiently L-alpha-1-palmitoyl-2-oleoyl phosphatidylcholine than L-alpha-1-palmitoyl-2-arachidonyl phosphatidylcholine, L-alpha-1-palmitoyl-2-arachidonyl phosphatidylethanolamine, or L-alpha-1-stearoyl-2-arachidonyl phosphatidylinositol. May be involved in the production of lung surfactant, the remodeling or regulation of cardiac muscle.
Gene Name:
PLA2G5
Uniprot ID:
P39877
Molecular weight:
15674.065
Enzyme Details
4. Group IIF secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Hydrolyzes phosphatidylglycerol versus phosphatidylcholine with a 15-fold preference.
Gene Name:
PLA2G2F
Uniprot ID:
Q9BZM2
Molecular weight:
23256.29
Enzyme Details
5. Cytosolic phospholipase A2
General function:
Involved in metabolic process
Specific function:
Selectively hydrolyzes arachidonyl phospholipids in the sn-2 position releasing arachidonic acid. Together with its lysophospholipid activity, it is implicated in the initiation of the inflammatory response.
Gene Name:
PLA2G4A
Uniprot ID:
P47712
Molecular weight:
85210.19
Enzyme Details
6. Phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
Gene Name:
PLA2G1B
Uniprot ID:
P04054
Molecular weight:
16359.535
Enzyme Details
7. Group XIIB secretory phospholipase A2-like protein
General function:
Involved in phospholipase A2 activity
Specific function:
Not known; does not seem to have catalytic activity.
Gene Name:
PLA2G12B
Uniprot ID:
Q9BX93
Molecular weight:
Not Available
Enzyme Details
8. Group 10 secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a powerful potency for releasing arachidonic acid from cell membrane phospholipids. Prefers phosphatidylethanolamine and phosphatidylcholine liposomes to those of phosphatidylserine.
Gene Name:
PLA2G10
Uniprot ID:
O15496
Molecular weight:
18153.04
Enzyme Details
9. Group IIE secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a preference for arachidonic-containing phospholipids.
Gene Name:
PLA2G2E
Uniprot ID:
Q9NZK7
Molecular weight:
15988.525
Enzyme Details
10. Acyl-protein thioesterase 2
General function:
Involved in hydrolase activity
Specific function:
May hydrolyze fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has lysophospholipase activity (By similarity). Deacylates GAP43.
Gene Name:
LYPLA2
Uniprot ID:
O95372
Molecular weight:
24736.71

Transporters

Enzyme Details
1. Multidrug resistance protein 3
General function:
Involved in ATP binding
Specific function:
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Hydrolyzes ATP with low efficiency. Human MDR3 is not capable of conferring drug resistance. Mediates the translocation of phosphatidylcholine across the canalicular membrane of the hepatocyte
Gene Name:
ABCB4
Uniprot ID:
P21439
Molecular weight:
141521.8

Only showing the first 10 proteins. There are 78 proteins in total.

Show all enzymes and transporters