Hmdb loader

Showing metabocard for PC(18:1(11Z)/15:0) (HMDB0008066)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (77)transporters (1) Show 78 proteinsXML
enzymes (77)transporters (1) Show 78 proteins
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2008-09-12 01:30:47 UTC
Update Date2022-11-30 19:03:09 UTC
HMDB IDHMDB0008066
Secondary Accession Numbers
  • HMDB08066
Metabolite Identification
Common NamePC(18:1(11Z)/15:0)
DescriptionPC(18:1(11Z)/15:0) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(18:1(11Z)/15:0), in particular, consists of one chain of vaccenic acid at the C-1 position and one chain of pentadecanoic acid at the C-2 position. The vaccenic acid moiety is derived from butter fat and animal fat, while the pentadecanoic acid moiety is derived from dairy products and milk fat. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling.While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.
Structure
Data?1582752532
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0008066 (PC(18:1(11Z)/15:0))


  Mrv0541 02231222012D          

 52 51  0  0  1  0            999 V2000
   16.5832   -9.3256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8780   -9.7327    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.1728   -9.3256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2884   -9.7327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.4677   -9.7327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.8780  -10.5470    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.9935   -9.3256    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   18.4007  -10.0308    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   17.5864   -8.6204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.6987   -8.9185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.4039   -9.3256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.1091   -8.9185    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.8143   -9.3256    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   20.4071  -10.0308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4669   -8.4731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.5194   -9.7327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6071   -9.3202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3216   -9.7328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0360   -9.3202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7505   -9.7327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4650   -9.3202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1795   -9.7327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8940   -9.3202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6084   -9.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3229   -9.7328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0374   -9.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7518   -9.7328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4663   -9.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1808   -9.7328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8953   -9.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6098   -9.7328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3242   -9.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.7532   -9.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7532   -8.4952    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1716  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8863  -10.5470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6009  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.0299  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7442  -10.5470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4589  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1731  -10.5470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8765  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   12.3054  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.7344  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4487  -10.5470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1633  -10.9592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1633  -11.7776    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.5787  -10.2537    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  1  4  1  0  0  0  0
  3  5  1  0  0  0  0
  2  6  1  6  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
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 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
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 18 17  1  0  0  0  0
 19 18  1  0  0  0  0
 20 19  1  0  0  0  0
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 22 21  1  0  0  0  0
 23 22  1  0  0  0  0
 24 23  2  0  0  0  0
 25 24  1  0  0  0  0
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 27 26  1  0  0  0  0
 28 27  1  0  0  0  0
 29 28  1  0  0  0  0
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 31 30  1  0  0  0  0
 32 31  1  0  0  0  0
 33 32  1  0  0  0  0
 34 33  1  0  0  0  0
 35 34  2  0  0  0  0
  5 34  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  2  0  0  0  0
 50  6  1  0  0  0  0
  2 52  1  1  0  0  0
M  CHG  2   8  -1  13   1
M  END
Download

3D MOL for HMDB0008066 (PC(18:1(11Z)/15:0))

HMDB0008066
     RDKit          3D
PC(18:1(11Z)/15:0)
131130  0  0  0  0  0  0  0  0999 V2000
   -6.0190    1.3620    3.5598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7836    1.3230    4.4389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5787    1.7259    3.6336 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3065    1.7037    4.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1244    2.1076    3.6106 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1640    2.0738    4.4405 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2468    2.4923    3.5225 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2928    1.7992    3.1709 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6028    0.4499    3.6315 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9825    0.3776    4.3030 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0292    0.8520    3.2936 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9430   -0.0166    2.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2939   -1.4520    2.2542 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9893   -2.2081    0.9911 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6861   -1.6069   -0.2364 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2579   -2.4234   -1.4036 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7081   -2.0006   -2.7603 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2185   -0.6389   -3.1215 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0655    0.2122   -2.2166 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9016   -0.2281   -4.4012 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4015    1.0543   -4.6700 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0057    1.2235   -4.1294 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4781    2.6306   -4.4797 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6239    2.8755   -5.8468 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0606    4.4158   -6.2499 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.5302    4.4341   -7.6426 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3777    5.4691   -6.1725 O   0  0  0  0  0  1  0  0  0  0  0  0
    0.9034    4.9758   -5.1878 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3453    4.5967   -5.6382 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4651    5.0463   -4.7292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5505    6.4620   -4.5583 N   0  0  0  0  0  4  0  0  0  0  0  0
   -1.9037    7.1637   -5.7665 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6607    6.6966   -3.6165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3749    7.0459   -3.9640 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8548    0.9849   -2.7647 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9302    0.1255   -2.2211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1486   -0.4595   -3.0127 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8002   -0.1569   -0.7968 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6988   -1.0000   -0.3314 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5407   -2.3535   -0.9270 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6199   -3.0445   -0.1921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8963   -4.3555   -0.8418 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9732   -5.1476   -0.1545 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5369   -5.5685    1.2232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5798   -6.3337    1.9895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7852   -5.4419    2.3124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8429   -6.2040    3.0125 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9986   -5.4194    3.4684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8776   -4.4332    4.5455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9694   -3.2774    4.4880 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2536   -2.4920    5.8208 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1904    0.3313    3.1745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8989    2.0106    2.6644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9329    1.6790    4.0941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9834    1.9375    5.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6199    0.2780    4.7652 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5117    0.9933    2.7866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7470    2.7007    3.1425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1902    0.6759    4.8572 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4517    2.4279    5.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2850    3.0834    3.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0585    1.3335    2.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2318    1.0699    4.8428 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0336    2.8480    5.2468 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1685    3.5095    3.0765 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0284    2.2530    2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5812   -0.3003    2.8236 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8792    0.1243    4.3860 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1507   -0.6477    4.6434 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0155    1.0536    5.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204    1.8854    2.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0443    0.6822    3.6974 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7724    0.4231    1.3856 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0283    0.1739    1.4829 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8197   -1.8994    3.1416 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4068   -1.5666    2.4219 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2912   -3.2855    1.0705 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9016   -2.2255    0.7880 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4381   -0.5565   -0.2424 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7871   -1.7477   -0.0633 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1525   -2.5816   -1.4342 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6966   -3.4555   -1.2411 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3211   -2.7256   -3.4917 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8353   -2.0428   -2.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0677    1.8200   -4.1607 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4751    1.3086   -5.7440 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3022    0.5547   -4.6738 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0208    3.4114   -3.9503 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3954    2.6004   -4.2568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4245    3.4857   -5.7007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5935    4.9482   -6.6640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3327    4.5909   -3.7161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4106    4.6722   -5.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6518    6.5055   -6.2973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0446    7.3922   -6.4088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4055    8.0971   -5.5135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6205    6.3472   -4.0771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4856    6.1501   -2.6851 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7675    7.7773   -3.3637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7073    7.9364   -3.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0104    6.3138   -3.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3984    7.3197   -4.6987 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  27  -1  31   1
M  END
Download

3D SDF for HMDB0008066 (PC(18:1(11Z)/15:0))


  Mrv0541 02231222012D          

 52 51  0  0  1  0            999 V2000
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 50 51  2  0  0  0  0
 50  6  1  0  0  0  0
  2 52  1  1  0  0  0
M  CHG  2   8  -1  13   1
M  END
> <DATABASE_ID>
HMDB0008066

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCCCC\C=C/CCCCCC)COP([O-])(=O)OCC[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C41H80NO8P/c1-6-8-10-12-14-16-18-20-21-22-24-25-27-29-31-33-40(43)47-37-39(38-49-51(45,46)48-36-35-42(3,4)5)50-41(44)34-32-30-28-26-23-19-17-15-13-11-9-7-2/h16,18,39H,6-15,17,19-38H2,1-5H3/b18-16-/t39-/m1/s1

> <INCHI_KEY>
MPKWBLNZRGSXJM-MGIDVFSBSA-N

> <FORMULA>
C41H80NO8P

> <MOLECULAR_WEIGHT>
746.0496

> <EXACT_MASS>
745.562155053

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
91.67141996028226

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
trimethyl(2-{[(2R)-3-[(11Z)-octadec-11-enoyloxy]-2-(pentadecanoyloxy)propyl phosphonato]oxy}ethyl)azanium

> <ALOGPS_LOGP>
5.42

> <JCHEM_LOGP>
8.196443387528253

> <ALOGPS_LOGS>
-7.54

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8550572064469137

> <JCHEM_PKA_STRONGEST_BASIC>
-6.744159309169687

> <JCHEM_POLAR_SURFACE_AREA>
111.19

> <JCHEM_REFRACTIVITY>
221.58270000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.28e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
lecithin

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0008066 (PC(18:1(11Z)/15:0))

HMDB0008066
     RDKit          3D
PC(18:1(11Z)/15:0)
131130  0  0  0  0  0  0  0  0999 V2000
   -6.0190    1.3620    3.5598 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.1640    2.0738    4.4405 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2468    2.4923    3.5225 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5117    0.9933    2.7866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7470    2.7007    3.1425 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.4517    2.4279    5.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.0283    0.1739    1.4829 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8197   -1.8994    3.1416 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4068   -1.5666    2.4219 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2912   -3.2855    1.0705 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9016   -2.2255    0.7880 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.7871   -1.7477   -0.0633 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1525   -2.5816   -1.4342 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6966   -3.4555   -1.2411 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3211   -2.7256   -3.4917 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8353   -2.0428   -2.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0677    1.8200   -4.1607 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4751    1.3086   -5.7440 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3022    0.5547   -4.6738 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0208    3.4114   -3.9503 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3954    2.6004   -4.2568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4245    3.4857   -5.7007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5935    4.9482   -6.6640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3327    4.5909   -3.7161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4106    4.6722   -5.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6518    6.5055   -6.2973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0446    7.3922   -6.4088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4055    8.0971   -5.5135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6205    6.3472   -4.0771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4856    6.1501   -2.6851 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7675    7.7773   -3.3637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7073    7.9364   -3.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0104    6.3138   -3.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3984    7.3197   -4.6987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6938    0.8495   -0.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8176   -0.5078   -0.4543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2990   -0.4912   -0.4224 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8197   -1.1341    0.7849 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2865   -2.3760   -1.9862 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4458   -2.9762   -0.6682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4476   -3.0804    0.8828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5033   -2.3828   -0.3546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2091   -4.2101   -1.9133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0136   -5.0162   -0.9023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1556   -6.0823   -0.7380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8962   -4.5431   -0.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6276   -6.2045    1.1366 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2086   -4.6811    1.8421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8655   -7.2574    1.4798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1319   -6.5833    2.9703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1867   -4.9987    1.3714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3880   -4.6211    2.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2319   -6.9634    2.2463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4282   -6.8855    3.8063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5082   -4.9450    2.5486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8350   -6.1376    3.7959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6702   -4.9467    5.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9253   -3.9980    4.7064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8781   -3.5085    4.6417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0933   -2.5496    3.6988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4813   -1.7395    5.9974 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2212   -3.2033    6.6712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2330   -2.0221    5.7811 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  2  0
 25 27  1  0
 25 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 31 32  1  0
 31 33  1  0
 31 34  1  0
 22 35  1  0
 35 36  1  0
 36 37  2  0
 36 38  1  0
 38 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  1  0
 50 51  1  0
  1 52  1  0
  1 53  1  0
  1 54  1  0
  2 55  1  0
  2 56  1  0
  3 57  1  0
  3 58  1  0
  4 59  1  0
  4 60  1  0
  5 61  1  0
  5 62  1  0
  6 63  1  0
  6 64  1  0
  7 65  1  0
  8 66  1  0
  9 67  1  0
  9 68  1  0
 10 69  1  0
 10 70  1  0
 11 71  1  0
 11 72  1  0
 12 73  1  0
 12 74  1  0
 13 75  1  0
 13 76  1  0
 14 77  1  0
 14 78  1  0
 15 79  1  0
 15 80  1  0
 16 81  1  0
 16 82  1  0
 17 83  1  0
 17 84  1  0
 21 85  1  0
 21 86  1  0
 22 87  1  6
 23 88  1  0
 23 89  1  0
 29 90  1  0
 29 91  1  0
 30 92  1  0
 30 93  1  0
 32 94  1  0
 32 95  1  0
 32 96  1  0
 33 97  1  0
 33 98  1  0
 33 99  1  0
 34100  1  0
 34101  1  0
 34102  1  0
 38103  1  0
 38104  1  0
 39105  1  0
 39106  1  0
 40107  1  0
 40108  1  0
 41109  1  0
 41110  1  0
 42111  1  0
 42112  1  0
 43113  1  0
 43114  1  0
 44115  1  0
 44116  1  0
 45117  1  0
 45118  1  0
 46119  1  0
 46120  1  0
 47121  1  0
 47122  1  0
 48123  1  0
 48124  1  0
 49125  1  0
 49126  1  0
 50127  1  0
 50128  1  0
 51129  1  0
 51130  1  0
 51131  1  0
M  CHG  2  27  -1  31   1
M  END
Download

PDB for HMDB0008066 (PC(18:1(11Z)/15:0))

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  C   UNK     0      30.955 -17.408   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      29.639 -18.168   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      28.323 -17.408   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      32.272 -18.168   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      27.006 -18.168   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      29.639 -19.688   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      33.588 -17.408   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      34.348 -18.724   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0      32.828 -16.091   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      34.904 -16.648   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      36.221 -17.408   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      37.537 -16.648   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      38.853 -17.408   0.000  0.00  0.00           N+1
HETATM   14  C   UNK     0      38.093 -18.724   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      40.072 -15.816   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      40.170 -18.168   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.000 -17.398   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.334 -18.168   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.667 -17.398   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.001 -18.168   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.335 -17.398   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.668 -18.168   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      11.002 -17.398   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.336 -17.398   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      13.669 -18.168   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      15.003 -17.398   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      16.337 -18.168   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      17.670 -17.398   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      19.004 -18.168   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      20.338 -17.398   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      21.672 -18.168   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      23.005 -17.398   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      24.339 -18.168   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      25.673 -17.398   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      25.673 -15.858   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       9.654 -20.457   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      10.988 -19.688   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      12.322 -20.457   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      13.655 -19.688   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      14.989 -20.457   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      16.323 -19.688   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      17.657 -20.457   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      18.990 -19.688   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      20.303 -20.457   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      21.636 -19.688   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      22.970 -20.457   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      24.303 -19.688   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      25.638 -20.457   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      26.971 -19.688   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      28.305 -20.457   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      28.305 -21.985   0.000  0.00  0.00           O+0
HETATM   52  H   UNK     0      30.947 -19.140   0.000  0.00  0.00           H+0
CONECT    1    2    4                                                       
CONECT    2    1    3    6   52                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   34                                                       
CONECT    6    2   50                                                       
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17   18                                                            
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35    5                                                  
CONECT   35   34                                                            
CONECT   36   37                                                            
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51    6                                                  
CONECT   51   50                                                            
CONECT   52    2                                                            
MASTER        0    0    0    0    0    0    0    0   52    0  102    0
END
Download

3D PDB for HMDB0008066 (PC(18:1(11Z)/15:0))

COMPND    HMDB0008066
HETATM    1  C1  UNL     1      -6.019   1.362   3.560  1.00  0.00           C  
HETATM    2  C2  UNL     1      -4.784   1.323   4.439  1.00  0.00           C  
HETATM    3  C3  UNL     1      -3.579   1.726   3.634  1.00  0.00           C  
HETATM    4  C4  UNL     1      -2.307   1.704   4.460  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.124   2.108   3.611  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.164   2.074   4.440  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.247   2.492   3.522  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.293   1.799   3.171  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.603   0.450   3.631  1.00  0.00           C  
HETATM   10  C10 UNL     1       3.982   0.378   4.303  1.00  0.00           C  
HETATM   11  C11 UNL     1       5.029   0.852   3.294  1.00  0.00           C  
HETATM   12  C12 UNL     1       4.943  -0.017   2.040  1.00  0.00           C  
HETATM   13  C13 UNL     1       5.294  -1.452   2.254  1.00  0.00           C  
HETATM   14  C14 UNL     1       4.989  -2.208   0.991  1.00  0.00           C  
HETATM   15  C15 UNL     1       5.686  -1.607  -0.236  1.00  0.00           C  
HETATM   16  C16 UNL     1       5.258  -2.423  -1.404  1.00  0.00           C  
HETATM   17  C17 UNL     1       5.708  -2.001  -2.760  1.00  0.00           C  
HETATM   18  C18 UNL     1       5.218  -0.639  -3.122  1.00  0.00           C  
HETATM   19  O1  UNL     1       5.066   0.212  -2.217  1.00  0.00           O  
HETATM   20  O2  UNL     1       4.902  -0.228  -4.401  1.00  0.00           O  
HETATM   21  C19 UNL     1       4.401   1.054  -4.670  1.00  0.00           C  
HETATM   22  C20 UNL     1       3.006   1.223  -4.129  1.00  0.00           C  
HETATM   23  C21 UNL     1       2.478   2.631  -4.480  1.00  0.00           C  
HETATM   24  O3  UNL     1       2.624   2.876  -5.847  1.00  0.00           O  
HETATM   25  P1  UNL     1       2.061   4.416  -6.250  1.00  0.00           P  
HETATM   26  O4  UNL     1       1.530   4.434  -7.643  1.00  0.00           O  
HETATM   27  O5  UNL     1       3.378   5.469  -6.173  1.00  0.00           O1-
HETATM   28  O6  UNL     1       0.903   4.976  -5.188  1.00  0.00           O  
HETATM   29  C22 UNL     1      -0.345   4.597  -5.638  1.00  0.00           C  
HETATM   30  C23 UNL     1      -1.465   5.046  -4.729  1.00  0.00           C  
HETATM   31  N1  UNL     1      -1.551   6.462  -4.558  1.00  0.00           N1+
HETATM   32  C24 UNL     1      -1.904   7.164  -5.766  1.00  0.00           C  
HETATM   33  C25 UNL     1      -2.661   6.697  -3.617  1.00  0.00           C  
HETATM   34  C26 UNL     1      -0.375   7.046  -3.964  1.00  0.00           C  
HETATM   35  O7  UNL     1       2.855   0.985  -2.765  1.00  0.00           O  
HETATM   36  C27 UNL     1       1.930   0.125  -2.221  1.00  0.00           C  
HETATM   37  O8  UNL     1       1.149  -0.459  -3.013  1.00  0.00           O  
HETATM   38  C28 UNL     1       1.800  -0.157  -0.797  1.00  0.00           C  
HETATM   39  C29 UNL     1       0.699  -1.000  -0.331  1.00  0.00           C  
HETATM   40  C30 UNL     1       0.541  -2.353  -0.927  1.00  0.00           C  
HETATM   41  C31 UNL     1      -0.620  -3.045  -0.192  1.00  0.00           C  
HETATM   42  C32 UNL     1      -0.896  -4.355  -0.842  1.00  0.00           C  
HETATM   43  C33 UNL     1      -1.973  -5.148  -0.155  1.00  0.00           C  
HETATM   44  C34 UNL     1      -1.537  -5.568   1.223  1.00  0.00           C  
HETATM   45  C35 UNL     1      -2.580  -6.334   1.990  1.00  0.00           C  
HETATM   46  C36 UNL     1      -3.785  -5.442   2.312  1.00  0.00           C  
HETATM   47  C37 UNL     1      -4.843  -6.204   3.013  1.00  0.00           C  
HETATM   48  C38 UNL     1      -5.999  -5.419   3.468  1.00  0.00           C  
HETATM   49  C39 UNL     1      -5.878  -4.433   4.545  1.00  0.00           C  
HETATM   50  C40 UNL     1      -4.969  -3.277   4.488  1.00  0.00           C  
HETATM   51  C41 UNL     1      -5.254  -2.492   5.821  1.00  0.00           C  
HETATM   52  H1  UNL     1      -6.190   0.331   3.175  1.00  0.00           H  
HETATM   53  H2  UNL     1      -5.899   2.011   2.664  1.00  0.00           H  
HETATM   54  H3  UNL     1      -6.933   1.679   4.094  1.00  0.00           H  
HETATM   55  H4  UNL     1      -4.983   1.938   5.318  1.00  0.00           H  
HETATM   56  H5  UNL     1      -4.620   0.278   4.765  1.00  0.00           H  
HETATM   57  H6  UNL     1      -3.512   0.993   2.787  1.00  0.00           H  
HETATM   58  H7  UNL     1      -3.747   2.701   3.142  1.00  0.00           H  
HETATM   59  H8  UNL     1      -2.190   0.676   4.857  1.00  0.00           H  
HETATM   60  H9  UNL     1      -2.452   2.428   5.280  1.00  0.00           H  
HETATM   61  H10 UNL     1      -1.285   3.083   3.137  1.00  0.00           H  
HETATM   62  H11 UNL     1      -1.059   1.334   2.811  1.00  0.00           H  
HETATM   63  H12 UNL     1       0.232   1.070   4.843  1.00  0.00           H  
HETATM   64  H13 UNL     1       0.034   2.848   5.247  1.00  0.00           H  
HETATM   65  H14 UNL     1       1.169   3.509   3.076  1.00  0.00           H  
HETATM   66  H15 UNL     1       3.028   2.253   2.459  1.00  0.00           H  
HETATM   67  H16 UNL     1       2.581  -0.300   2.824  1.00  0.00           H  
HETATM   68  H17 UNL     1       1.879   0.124   4.386  1.00  0.00           H  
HETATM   69  H18 UNL     1       4.151  -0.648   4.643  1.00  0.00           H  
HETATM   70  H19 UNL     1       4.016   1.054   5.168  1.00  0.00           H  
HETATM   71  H20 UNL     1       4.920   1.885   2.996  1.00  0.00           H  
HETATM   72  H21 UNL     1       6.044   0.682   3.697  1.00  0.00           H  
HETATM   73  H22 UNL     1       5.772   0.423   1.386  1.00  0.00           H  
HETATM   74  H23 UNL     1       4.028   0.174   1.483  1.00  0.00           H  
HETATM   75  H24 UNL     1       4.820  -1.899   3.142  1.00  0.00           H  
HETATM   76  H25 UNL     1       6.407  -1.567   2.422  1.00  0.00           H  
HETATM   77  H26 UNL     1       5.291  -3.285   1.071  1.00  0.00           H  
HETATM   78  H27 UNL     1       3.902  -2.226   0.788  1.00  0.00           H  
HETATM   79  H28 UNL     1       5.438  -0.556  -0.242  1.00  0.00           H  
HETATM   80  H29 UNL     1       6.787  -1.748  -0.063  1.00  0.00           H  
HETATM   81  H30 UNL     1       4.152  -2.582  -1.434  1.00  0.00           H  
HETATM   82  H31 UNL     1       5.697  -3.456  -1.241  1.00  0.00           H  
HETATM   83  H32 UNL     1       5.321  -2.726  -3.492  1.00  0.00           H  
HETATM   84  H33 UNL     1       6.835  -2.043  -2.842  1.00  0.00           H  
HETATM   85  H34 UNL     1       5.068   1.820  -4.161  1.00  0.00           H  
HETATM   86  H35 UNL     1       4.475   1.309  -5.744  1.00  0.00           H  
HETATM   87  H36 UNL     1       2.302   0.555  -4.674  1.00  0.00           H  
HETATM   88  H37 UNL     1       3.021   3.411  -3.950  1.00  0.00           H  
HETATM   89  H38 UNL     1       1.395   2.600  -4.257  1.00  0.00           H  
HETATM   90  H39 UNL     1      -0.424   3.486  -5.701  1.00  0.00           H  
HETATM   91  H40 UNL     1      -0.594   4.948  -6.664  1.00  0.00           H  
HETATM   92  H41 UNL     1      -1.333   4.591  -3.716  1.00  0.00           H  
HETATM   93  H42 UNL     1      -2.411   4.672  -5.149  1.00  0.00           H  
HETATM   94  H43 UNL     1      -2.652   6.506  -6.297  1.00  0.00           H  
HETATM   95  H44 UNL     1      -1.045   7.392  -6.409  1.00  0.00           H  
HETATM   96  H45 UNL     1      -2.405   8.097  -5.514  1.00  0.00           H  
HETATM   97  H46 UNL     1      -3.621   6.347  -4.077  1.00  0.00           H  
HETATM   98  H47 UNL     1      -2.486   6.150  -2.685  1.00  0.00           H  
HETATM   99  H48 UNL     1      -2.768   7.777  -3.364  1.00  0.00           H  
HETATM  100  H49 UNL     1      -0.707   7.936  -3.354  1.00  0.00           H  
HETATM  101  H50 UNL     1      -0.010   6.314  -3.183  1.00  0.00           H  
HETATM  102  H51 UNL     1       0.398   7.320  -4.699  1.00  0.00           H  
HETATM  103  H52 UNL     1       1.694   0.849  -0.280  1.00  0.00           H  
HETATM  104  H53 UNL     1       2.818  -0.508  -0.454  1.00  0.00           H  
HETATM  105  H54 UNL     1      -0.299  -0.491  -0.422  1.00  0.00           H  
HETATM  106  H55 UNL     1       0.820  -1.134   0.785  1.00  0.00           H  
HETATM  107  H56 UNL     1       0.286  -2.376  -1.986  1.00  0.00           H  
HETATM  108  H57 UNL     1       1.446  -2.976  -0.668  1.00  0.00           H  
HETATM  109  H58 UNL     1      -0.448  -3.080   0.883  1.00  0.00           H  
HETATM  110  H59 UNL     1      -1.503  -2.383  -0.355  1.00  0.00           H  
HETATM  111  H60 UNL     1      -1.209  -4.210  -1.913  1.00  0.00           H  
HETATM  112  H61 UNL     1       0.014  -5.016  -0.902  1.00  0.00           H  
HETATM  113  H62 UNL     1      -2.156  -6.082  -0.738  1.00  0.00           H  
HETATM  114  H63 UNL     1      -2.896  -4.543  -0.143  1.00  0.00           H  
HETATM  115  H64 UNL     1      -0.628  -6.205   1.137  1.00  0.00           H  
HETATM  116  H65 UNL     1      -1.209  -4.681   1.842  1.00  0.00           H  
HETATM  117  H66 UNL     1      -2.865  -7.257   1.480  1.00  0.00           H  
HETATM  118  H67 UNL     1      -2.132  -6.583   2.970  1.00  0.00           H  
HETATM  119  H68 UNL     1      -4.187  -4.999   1.371  1.00  0.00           H  
HETATM  120  H69 UNL     1      -3.388  -4.621   2.893  1.00  0.00           H  
HETATM  121  H70 UNL     1      -5.232  -6.963   2.246  1.00  0.00           H  
HETATM  122  H71 UNL     1      -4.428  -6.886   3.806  1.00  0.00           H  
HETATM  123  H72 UNL     1      -6.508  -4.945   2.549  1.00  0.00           H  
HETATM  124  H73 UNL     1      -6.835  -6.138   3.796  1.00  0.00           H  
HETATM  125  H74 UNL     1      -5.670  -4.947   5.545  1.00  0.00           H  
HETATM  126  H75 UNL     1      -6.925  -3.998   4.706  1.00  0.00           H  
HETATM  127  H76 UNL     1      -3.878  -3.508   4.642  1.00  0.00           H  
HETATM  128  H77 UNL     1      -5.093  -2.550   3.699  1.00  0.00           H  
HETATM  129  H78 UNL     1      -4.481  -1.740   5.997  1.00  0.00           H  
HETATM  130  H79 UNL     1      -5.221  -3.203   6.671  1.00  0.00           H  
HETATM  131  H80 UNL     1      -6.233  -2.022   5.781  1.00  0.00           H  
CONECT    1    2   52   53   54
CONECT    2    3   55   56
CONECT    3    4   57   58
CONECT    4    5   59   60
CONECT    5    6   61   62
CONECT    6    7   63   64
CONECT    7    8    8   65
CONECT    8    9   66
CONECT    9   10   67   68
CONECT   10   11   69   70
CONECT   11   12   71   72
CONECT   12   13   73   74
CONECT   13   14   75   76
CONECT   14   15   77   78
CONECT   15   16   79   80
CONECT   16   17   81   82
CONECT   17   18   83   84
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22   85   86
CONECT   22   23   35   87
CONECT   23   24   88   89
CONECT   24   25
CONECT   25   26   26   27   28
CONECT   28   29
CONECT   29   30   90   91
CONECT   30   31   92   93
CONECT   31   32   33   34
CONECT   32   94   95   96
CONECT   33   97   98   99
CONECT   34  100  101  102
CONECT   35   36
CONECT   36   37   37   38
CONECT   38   39  103  104
CONECT   39   40  105  106
CONECT   40   41  107  108
CONECT   41   42  109  110
CONECT   42   43  111  112
CONECT   43   44  113  114
CONECT   44   45  115  116
CONECT   45   46  117  118
CONECT   46   47  119  120
CONECT   47   48  121  122
CONECT   48   49  123  124
CONECT   49   50  125  126
CONECT   50   51  127  128
CONECT   51  129  130  131
END
Download

SMILES for HMDB0008066 (PC(18:1(11Z)/15:0))

CCCCCCCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCCCC\C=C/CCCCCC)COP([O-])(=O)OCC[N+](C)(C)C
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INCHI for HMDB0008066 (PC(18:1(11Z)/15:0))

InChI=1S/C41H80NO8P/c1-6-8-10-12-14-16-18-20-21-22-24-25-27-29-31-33-40(43)47-37-39(38-49-51(45,46)48-36-35-42(3,4)5)50-41(44)34-32-30-28-26-23-19-17-15-13-11-9-7-2/h16,18,39H,6-15,17,19-38H2,1-5H3/b18-16-/t39-/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
1-Vaccenoyl-2-pentadecanoyl-sn-glycero-3-phosphocholineHMDB
Gpcho(18:1/15:0)HMDB
Gpcho(18:1n7/15:0)HMDB
Gpcho(18:1W7/15:0)HMDB
Gpcho(33:1)HMDB
LecithinHMDB
PC(18:1/15:0)HMDB
PC(18:1n7/15:0)HMDB
PC(18:1W7/15:0)HMDB
PC(33:1)HMDB
Phosphatidylcholine(18:1/15:0)HMDB
Phosphatidylcholine(18:1n7/15:0)HMDB
Phosphatidylcholine(18:1W7/15:0)HMDB
Phosphatidylcholine(33:1)HMDB
1-(11Z-Octadecenoyl)-2-pentadecanoyl-sn-glycero-3-phosphocholineHMDB
PC(18:1(11Z)/15:0)Lipid Annotator
Chemical FormulaC41H80NO8P
Average Molecular Weight746.0496
Monoisotopic Molecular Weight745.562155053
IUPAC Nametrimethyl(2-{[(2R)-3-[(11Z)-octadec-11-enoyloxy]-2-(pentadecanoyloxy)propyl phosphonato]oxy}ethyl)azanium
Traditional Namelecithin
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCCCC\C=C/CCCCCC)COP([O-])(=O)OCC[N+](C)(C)C
InChI Identifier
InChI=1S/C41H80NO8P/c1-6-8-10-12-14-16-18-20-21-22-24-25-27-29-31-33-40(43)47-37-39(38-49-51(45,46)48-36-35-42(3,4)5)50-41(44)34-32-30-28-26-23-19-17-15-13-11-9-7-2/h16,18,39H,6-15,17,19-38H2,1-5H3/b18-16-/t39-/m1/s1
InChI KeyMPKWBLNZRGSXJM-MGIDVFSBSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylcholines. These are glycerophosphocholines in which the two free -OH are attached to one fatty acid each through an ester linkage.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct ParentPhosphatidylcholines
Alternative Parents
Substituents
  • Diacylglycero-3-phosphocholine
  • Phosphocholine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Amine
  • Organic salt
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Health effect
Disposition
Biological locationSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.3e-05 g/LALOGPS
logP5.42ALOGPS
logP8.2ChemAxon
logS-7.5ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-6.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area111.19 ŲChemAxon
Rotatable Bond Count40ChemAxon
Refractivity221.58 m³·mol⁻¹ChemAxon
Polarizability91.67 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+287.71330932474
DeepCCS[M-H]-285.87930932474
DeepCCS[M-2H]-319.11930932474
DeepCCS[M+Na]+293.31930932474
AllCCS[M+H]+288.032859911
AllCCS[M+H-H2O]+287.932859911
AllCCS[M+NH4]+288.132859911
AllCCS[M+Na]+288.232859911
AllCCS[M-H]-279.232859911
AllCCS[M+Na-2H]-283.532859911
AllCCS[M+HCOO]-288.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PC(18:1(11Z)/15:0)CCCCCCCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCCCC\C=C/CCCCCC)COP([O-])(=O)OCC[N+](C)(C)C4747.3Standard polar33892256
PC(18:1(11Z)/15:0)CCCCCCCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCCCC\C=C/CCCCCC)COP([O-])(=O)OCC[N+](C)(C)C4254.6Standard non polar33892256
PC(18:1(11Z)/15:0)CCCCCCCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCCCC\C=C/CCCCCC)COP([O-])(=O)OCC[N+](C)(C)C4851.5Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 10V, Positive-QTOFsplash10-0002-0000000900-229f4ab5ccda847b1f522017-10-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 20V, Positive-QTOFsplash10-000t-0600000900-b8d4eb1a27eb954a028c2017-10-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 40V, Positive-QTOFsplash10-001i-1900231200-9fa5593cdf64a38c36582017-10-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 10V, Positive-QTOFsplash10-014i-0000000900-f838901a8cc5953bfd9d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 20V, Positive-QTOFsplash10-014i-0000000900-af19b0d392073b08857d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 40V, Positive-QTOFsplash10-000j-0500390200-290208a30d762c0992622021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 10V, Negative-QTOFsplash10-001i-0000000900-44b34785552db236c3b32021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 20V, Negative-QTOFsplash10-001i-0030000900-f336d6a4ef0e13237d722021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 40V, Negative-QTOFsplash10-001l-0090000400-b0a7cb6c0bb919583a5d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 10V, Positive-QTOFsplash10-0002-0000000900-33c3132d5b9a740ac9082021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 20V, Positive-QTOFsplash10-000t-0600000900-348610127b1bcbb5a47d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 40V, Positive-QTOFsplash10-001i-1900231200-e905fc1763966f86c3c82021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 10V, Positive-QTOFsplash10-0udi-0000000900-dea40d097d7939446bdb2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 20V, Positive-QTOFsplash10-0udi-0000001900-e5028f86ed3b639928db2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 40V, Positive-QTOFsplash10-0i00-0100691100-51e54c79a2c72ac6d3c82021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 10V, Negative-QTOFsplash10-0006-0000000900-775208a25e34adb911ea2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 20V, Negative-QTOFsplash10-0006-0081043900-f1c599d7b98fd16710912021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(18:1(11Z)/15:0) 40V, Negative-QTOFsplash10-001i-3190400000-7cf733a5cb03e91624c52021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue Locations
  • All Tissues
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Predicted Concentrations
BiospecimenValueOriginal ageOriginal sexOriginal conditionComments
Blood0.111 +/- 0.017 uMAdult (>18 years old)BothNormal (Most Probable)Calculated using MetaboAnalyst
Blood10.567 +/- 0.643 uMAdult (>18 years old)BothNormal (Upper Limit)Calculated using MetaboAnalyst
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB025257
KNApSAcK IDNot Available
Chemspider ID24766730
KEGG Compound IDC00157
BioCyc ID PHOSPHATIDYLCHOLINE
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53478715
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Only showing the first 10 proteins. There are 78 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Acyl-protein thioesterase 1
General function:
Involved in hydrolase activity
Specific function:
Hydrolyzes fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has depalmitoylating activity and also low lysophospholipase activity.
Gene Name:
LYPLA1
Uniprot ID:
O75608
Molecular weight:
24669.355
Enzyme Details
2. Group XV phospholipase A2
General function:
Involved in phosphatidylcholine-sterol O-acyltransferase activity
Specific function:
Has transacylase and calcium-independent phospholipase A2 activity. Catalyzes the formation of 1-O-acyl-N-acetylsphingosine and the concomitant release of a lyso-phospholipid (By similarity). May have weak lysophospholipase activity.
Gene Name:
PLA2G15
Uniprot ID:
Q8NCC3
Molecular weight:
Not Available
Enzyme Details
3. Calcium-dependent phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. This isozyme hydrolyzes more efficiently L-alpha-1-palmitoyl-2-oleoyl phosphatidylcholine than L-alpha-1-palmitoyl-2-arachidonyl phosphatidylcholine, L-alpha-1-palmitoyl-2-arachidonyl phosphatidylethanolamine, or L-alpha-1-stearoyl-2-arachidonyl phosphatidylinositol. May be involved in the production of lung surfactant, the remodeling or regulation of cardiac muscle.
Gene Name:
PLA2G5
Uniprot ID:
P39877
Molecular weight:
15674.065
Enzyme Details
4. Group IIF secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Hydrolyzes phosphatidylglycerol versus phosphatidylcholine with a 15-fold preference.
Gene Name:
PLA2G2F
Uniprot ID:
Q9BZM2
Molecular weight:
23256.29
Enzyme Details
5. Cytosolic phospholipase A2
General function:
Involved in metabolic process
Specific function:
Selectively hydrolyzes arachidonyl phospholipids in the sn-2 position releasing arachidonic acid. Together with its lysophospholipid activity, it is implicated in the initiation of the inflammatory response.
Gene Name:
PLA2G4A
Uniprot ID:
P47712
Molecular weight:
85210.19
Enzyme Details
6. Phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
Gene Name:
PLA2G1B
Uniprot ID:
P04054
Molecular weight:
16359.535
Enzyme Details
7. Group XIIB secretory phospholipase A2-like protein
General function:
Involved in phospholipase A2 activity
Specific function:
Not known; does not seem to have catalytic activity.
Gene Name:
PLA2G12B
Uniprot ID:
Q9BX93
Molecular weight:
Not Available
Enzyme Details
8. Group 10 secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a powerful potency for releasing arachidonic acid from cell membrane phospholipids. Prefers phosphatidylethanolamine and phosphatidylcholine liposomes to those of phosphatidylserine.
Gene Name:
PLA2G10
Uniprot ID:
O15496
Molecular weight:
18153.04
Enzyme Details
9. Group IIE secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a preference for arachidonic-containing phospholipids.
Gene Name:
PLA2G2E
Uniprot ID:
Q9NZK7
Molecular weight:
15988.525
Enzyme Details
10. Acyl-protein thioesterase 2
General function:
Involved in hydrolase activity
Specific function:
May hydrolyze fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has lysophospholipase activity (By similarity). Deacylates GAP43.
Gene Name:
LYPLA2
Uniprot ID:
O95372
Molecular weight:
24736.71

Transporters

Enzyme Details
1. Multidrug resistance protein 3
General function:
Involved in ATP binding
Specific function:
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Hydrolyzes ATP with low efficiency. Human MDR3 is not capable of conferring drug resistance. Mediates the translocation of phosphatidylcholine across the canalicular membrane of the hepatocyte
Gene Name:
ABCB4
Uniprot ID:
P21439
Molecular weight:
141521.8

Only showing the first 10 proteins. There are 78 proteins in total.

Show all enzymes and transporters