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Showing metabocard for PC(24:0/18:2(9Z,12Z)) (HMDB0008763)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (77)transporters (1) Show 78 proteinsXML
enzymes (77)transporters (1) Show 78 proteins
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2008-09-12 01:42:30 UTC
Update Date2022-03-07 02:50:17 UTC
HMDB IDHMDB0008763
Secondary Accession Numbers
  • HMDB08763
Metabolite Identification
Common NamePC(24:0/18:2(9Z,12Z))
DescriptionPC(24:0/18:2(9Z,12Z)) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(24:0/18:2(9Z,12Z)), in particular, consists of one chain of lignoceric acid at the C-1 position and one chain of linoleic acid at the C-2 position. The lignoceric acid moiety is derived from groundnut oil, while the linoleic acid moiety is derived from seed oils. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling.While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.
Structure
Data?1582752627
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))


  Mrv0541 02231222482D          

 61 60  0  0  1  0            999 V2000
   19.8636   -8.2256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1583   -8.6327    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.4532   -8.2256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5687   -8.6327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.7480   -8.6327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.1583   -9.4470    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2739   -8.2256    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   21.6811   -8.9307    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   20.8668   -7.5203    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.9791   -7.8184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.6842   -8.2256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3895   -7.8184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.0946   -8.2256    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   23.6875   -8.9307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.7472   -7.3730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.7998   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6006   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3151   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0296   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7440   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4585   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1730   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8875   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6019   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3164   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0309   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.4599   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1743   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8888   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6033   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3177   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0322   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7467   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4612   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1757   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8901   -8.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6046   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   17.0335   -8.2202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0335   -7.3952    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2978   -9.4469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.5847   -9.8595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2991   -9.4470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0136   -9.8595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7281   -9.8594    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4425   -9.4469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   14.8715   -9.4469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   16.3005   -9.4469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   18.4439  -10.6845    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.0752   -9.2126    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
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  7  9  2  0  0  0  0
  7 10  1  0  0  0  0
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 12 13  1  0  0  0  0
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 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
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 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
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 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
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 38 39  1  0  0  0  0
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 60 59  2  0  0  0  0
  6 59  1  0  0  0  0
  2 61  1  1  0  0  0
M  CHG  2   8  -1  13   1
M  END
Download

3D MOL for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))

HMDB0008763
     RDKit          3D
PC(24:0/18:2(9Z,12Z))
156155  0  0  0  0  0  0  0  0999 V2000
    0.6131    0.8359    0.9491 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2203    1.9901    1.8698 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3754    2.4154    2.7038 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0074    3.5316    3.6569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1094    3.1268    4.5718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4060    4.1493    5.5709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5072    4.7896    5.7759 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7487    4.6095    4.9953 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1418    5.9198    4.4951 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3262    6.2634    3.2856 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1920    5.4407    2.1076 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1617    6.1110    1.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0357    5.4092   -0.1432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0198    6.1073   -1.0251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9851    5.4238   -2.3850 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0119    6.0481   -3.2933 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0620    5.4621   -4.6680 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3952    4.0235   -4.7357 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6615    3.5177   -5.8621 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4302    3.2209   -3.6597 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7188    1.8668   -3.5208 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4900    1.1159   -2.9225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5714    1.2269   -3.7808 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8594    0.7256   -3.5856 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0606    0.1229   -2.5258 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8872    0.9213   -4.6035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1410    0.1956   -4.5892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1297   -1.2568   -4.8361 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.5465   -3.5808   -4.2976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8522   -4.4455   -3.3275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3707   -4.1984   -3.1560 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5926   -4.5409    1.2047 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.2622   -5.0348    3.5911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0972   -4.4693    4.6715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1630   -5.1076    5.9844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6370   -6.4787    6.1668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8997   -7.6211    5.5773 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4860   -7.7392    6.0371 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1757   -8.9314    5.4229 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2431   -8.8643    3.9183 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9409  -10.0981    3.3577 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3408  -10.2558    3.8640 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9239    1.7927   -2.5922 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0020    2.4541   -3.1783 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3710    2.4645   -2.2085 P   0  0  0  0  0  5  0  0  0  0  0  0
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    4.0131    2.0526   -0.6144 O   0  0  0  0  0  1  0  0  0  0  0  0
    5.0930    4.0159   -2.2507 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1933    4.5784   -0.9896 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8215    5.9329   -1.1586 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0805    6.8369   -2.0000 N   0  0  0  0  0  4  0  0  0  0  0  0
    5.7524    8.1420   -1.8616 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7005    6.9933   -1.6464 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2433    6.4949   -3.4107 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5125    1.1623    0.3970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8325   -0.0802    1.5426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2105    0.7184    0.2396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5804    1.5723    2.5155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1091    2.8118    1.2352 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1625    2.8000    2.0037 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8734    1.5823    3.2461 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8015    4.4278    3.0721 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9028    3.7307    4.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0187    2.8089    4.0444 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2572    2.2138    5.1337 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4499    4.4008    6.2467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5503    5.5419    6.6032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5305    4.3021    5.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7355    3.8080    4.2595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2852    6.6791    5.3237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6310    7.3370    3.1039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1428    5.4519    1.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8107    4.4219    2.2700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1465    6.1111    1.6505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4574    7.1492    1.0373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7307    4.3731    0.0286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9943    5.4305   -0.6913 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0123    6.0047   -0.5747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3022    7.1608   -1.2182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9953    5.4655   -2.8721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7517    4.3849   -2.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0297    6.1123   -2.8302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2589    7.1407   -3.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7071    6.0615   -5.3518 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  53  -1  57   1
M  END
Download

3D SDF for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))


  Mrv0541 02231222482D          

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M  CHG  2   8  -1  13   1
M  END
> <DATABASE_ID>
HMDB0008763

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCCCCCCCCCCC(=O)OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C50H96NO8P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-29-30-32-34-36-38-40-42-49(52)56-46-48(47-58-60(54,55)57-45-44-51(3,4)5)59-50(53)43-41-39-37-35-33-31-28-21-19-17-15-13-11-9-7-2/h15,17,21,28,48H,6-14,16,18-20,22-27,29-47H2,1-5H3/b17-15-,28-21-/t48-/m1/s1

> <INCHI_KEY>
IIGQXTIUKKRHCT-WPYVRAPFSA-N

> <FORMULA>
C50H96NO8P

> <MOLECULAR_WEIGHT>
870.2729

> <EXACT_MASS>
869.687355565

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
109.74828869747769

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
trimethyl(2-{[(2R)-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-3-(tetracosanoyloxy)propyl phosphonato]oxy}ethyl)azanium

> <ALOGPS_LOGP>
6.65

> <JCHEM_LOGP>
11.835639715861586

> <ALOGPS_LOGS>
-7.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8550572064469137

> <JCHEM_PKA_STRONGEST_BASIC>
-6.744159309169722

> <JCHEM_POLAR_SURFACE_AREA>
111.19

> <JCHEM_REFRACTIVITY>
264.10830000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
48

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.09e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
lecithin

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))

HMDB0008763
     RDKit          3D
PC(24:0/18:2(9Z,12Z))
156155  0  0  0  0  0  0  0  0999 V2000
    0.6131    0.8359    0.9491 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2203    1.9901    1.8698 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3754    2.4154    2.7038 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0074    3.5316    3.6569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1094    3.1268    4.5718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4060    4.1493    5.5709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5072    4.7896    5.7759 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7487    4.6095    4.9953 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1418    5.9198    4.4951 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3262    6.2634    3.2856 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1920    5.4407    2.1076 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1617    6.1110    1.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0357    5.4092   -0.1432 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9239    1.7927   -2.5922 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0020    2.4541   -3.1783 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3710    2.4645   -2.2085 P   0  0  0  0  0  5  0  0  0  0  0  0
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    1.5125    1.1623    0.3970 H   0  0  0  0  0  0  0  0  0  0  0  0
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 33110  1  0
 34111  1  0
 34112  1  0
 35113  1  0
 35114  1  0
 36115  1  0
 36116  1  0
 37117  1  0
 37118  1  0
 38119  1  0
 38120  1  0
 39121  1  0
 39122  1  0
 40123  1  0
 40124  1  0
 41125  1  0
 41126  1  0
 42127  1  0
 42128  1  0
 43129  1  0
 43130  1  0
 44131  1  0
 44132  1  0
 45133  1  0
 45134  1  0
 46135  1  0
 46136  1  0
 47137  1  0
 47138  1  0
 48139  1  0
 48140  1  0
 48141  1  0
 49142  1  0
 49143  1  0
 55144  1  0
 55145  1  0
 56146  1  0
 56147  1  0
 58148  1  0
 58149  1  0
 58150  1  0
 59151  1  0
 59152  1  0
 59153  1  0
 60154  1  0
 60155  1  0
 60156  1  0
M  CHG  2  53  -1  57   1
M  END
Download

PDB for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  C   UNK     0      37.079 -15.354   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      35.762 -16.114   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      34.446 -15.354   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      38.395 -16.114   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      33.130 -16.114   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      35.762 -17.634   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      39.711 -15.354   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      40.471 -16.671   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0      38.951 -14.038   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      41.028 -14.594   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      42.344 -15.354   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      43.660 -14.594   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      44.977 -15.354   0.000  0.00  0.00           N+1
HETATM   14  C   UNK     0      44.217 -16.671   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      46.195 -13.763   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      46.293 -16.114   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.121 -16.114   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.455 -15.344   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.789 -16.114   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.122 -15.344   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.456 -16.114   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.790 -15.344   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.123 -16.114   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.457 -15.344   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      11.791 -16.114   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      13.124 -15.344   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.458 -16.114   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      15.792 -15.344   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      17.125 -16.114   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      18.459 -15.344   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      19.793 -16.114   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      21.126 -15.344   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      22.460 -16.114   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      23.794 -15.344   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      25.128 -16.114   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      26.461 -15.344   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      27.795 -16.114   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      29.129 -15.344   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      30.462 -16.114   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      31.796 -15.344   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      31.796 -13.804   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      11.756 -17.634   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      13.090 -18.404   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      14.423 -17.634   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      15.757 -18.404   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      17.091 -17.634   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      18.424 -18.404   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      19.758 -18.404   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      21.092 -17.634   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      22.425 -18.404   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      23.759 -18.404   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      25.093 -17.634   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      26.426 -18.404   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      27.760 -17.634   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      29.094 -18.404   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      30.428 -17.634   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      31.761 -18.404   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      33.095 -17.634   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      34.429 -18.404   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0      34.429 -19.944   0.000  0.00  0.00           O+0
HETATM   61  H   UNK     0      37.474 -17.197   0.000  0.00  0.00           H+0
CONECT    1    2    4                                                       
CONECT    2    1    3    6   61                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   40                                                       
CONECT    6    2   59                                                       
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17   18                                                            
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39    5   41                                                  
CONECT   41   40                                                            
CONECT   42   43                                                            
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60    6                                                  
CONECT   60   59                                                            
CONECT   61    2                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  120    0
END
Download

3D PDB for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))

COMPND    HMDB0008763
HETATM    1  C1  UNL     1       0.613   0.836   0.949  1.00  0.00           C  
HETATM    2  C2  UNL     1       0.220   1.990   1.870  1.00  0.00           C  
HETATM    3  C3  UNL     1       1.375   2.415   2.704  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.007   3.532   3.657  1.00  0.00           C  
HETATM    5  C5  UNL     1      -0.109   3.127   4.572  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.406   4.149   5.571  1.00  0.00           C  
HETATM    7  C7  UNL     1      -1.507   4.790   5.776  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.749   4.610   4.995  1.00  0.00           C  
HETATM    9  C9  UNL     1      -3.142   5.920   4.495  1.00  0.00           C  
HETATM   10  C10 UNL     1      -3.326   6.263   3.286  1.00  0.00           C  
HETATM   11  C11 UNL     1      -3.192   5.441   2.108  1.00  0.00           C  
HETATM   12  C12 UNL     1      -2.162   6.111   1.191  1.00  0.00           C  
HETATM   13  C13 UNL     1      -2.036   5.409  -0.143  1.00  0.00           C  
HETATM   14  C14 UNL     1      -1.020   6.107  -1.025  1.00  0.00           C  
HETATM   15  C15 UNL     1      -0.985   5.424  -2.385  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.012   6.048  -3.293  1.00  0.00           C  
HETATM   17  C17 UNL     1       0.062   5.462  -4.668  1.00  0.00           C  
HETATM   18  C18 UNL     1       0.395   4.023  -4.736  1.00  0.00           C  
HETATM   19  O1  UNL     1       0.661   3.518  -5.862  1.00  0.00           O  
HETATM   20  O2  UNL     1       0.430   3.221  -3.660  1.00  0.00           O  
HETATM   21  C19 UNL     1       0.719   1.867  -3.521  1.00  0.00           C  
HETATM   22  C20 UNL     1      -0.490   1.116  -2.923  1.00  0.00           C  
HETATM   23  O3  UNL     1      -1.571   1.227  -3.781  1.00  0.00           O  
HETATM   24  C21 UNL     1      -2.859   0.726  -3.586  1.00  0.00           C  
HETATM   25  O4  UNL     1      -3.061   0.123  -2.526  1.00  0.00           O  
HETATM   26  C22 UNL     1      -3.887   0.921  -4.604  1.00  0.00           C  
HETATM   27  C23 UNL     1      -5.141   0.196  -4.589  1.00  0.00           C  
HETATM   28  C24 UNL     1      -5.130  -1.257  -4.836  1.00  0.00           C  
HETATM   29  C25 UNL     1      -4.377  -2.096  -3.882  1.00  0.00           C  
HETATM   30  C26 UNL     1      -4.546  -3.581  -4.298  1.00  0.00           C  
HETATM   31  C27 UNL     1      -3.852  -4.445  -3.328  1.00  0.00           C  
HETATM   32  C28 UNL     1      -2.371  -4.198  -3.156  1.00  0.00           C  
HETATM   33  C29 UNL     1      -1.905  -5.226  -2.148  1.00  0.00           C  
HETATM   34  C30 UNL     1      -0.467  -5.161  -1.793  1.00  0.00           C  
HETATM   35  C31 UNL     1      -0.054  -3.862  -1.161  1.00  0.00           C  
HETATM   36  C32 UNL     1      -0.767  -3.540   0.102  1.00  0.00           C  
HETATM   37  C33 UNL     1      -0.593  -4.541   1.205  1.00  0.00           C  
HETATM   38  C34 UNL     1      -1.389  -4.078   2.400  1.00  0.00           C  
HETATM   39  C35 UNL     1      -1.262  -5.035   3.591  1.00  0.00           C  
HETATM   40  C36 UNL     1      -2.097  -4.469   4.671  1.00  0.00           C  
HETATM   41  C37 UNL     1      -2.163  -5.108   5.984  1.00  0.00           C  
HETATM   42  C38 UNL     1      -2.637  -6.479   6.167  1.00  0.00           C  
HETATM   43  C39 UNL     1      -1.900  -7.621   5.577  1.00  0.00           C  
HETATM   44  C40 UNL     1      -0.486  -7.739   6.037  1.00  0.00           C  
HETATM   45  C41 UNL     1       0.176  -8.931   5.423  1.00  0.00           C  
HETATM   46  C42 UNL     1       0.243  -8.864   3.918  1.00  0.00           C  
HETATM   47  C43 UNL     1       0.941 -10.098   3.358  1.00  0.00           C  
HETATM   48  C44 UNL     1       2.341 -10.256   3.864  1.00  0.00           C  
HETATM   49  C45 UNL     1       1.924   1.793  -2.592  1.00  0.00           C  
HETATM   50  O5  UNL     1       3.002   2.454  -3.178  1.00  0.00           O  
HETATM   51  P1  UNL     1       4.371   2.465  -2.209  1.00  0.00           P  
HETATM   52  O6  UNL     1       5.423   1.498  -2.699  1.00  0.00           O  
HETATM   53  O7  UNL     1       4.013   2.053  -0.614  1.00  0.00           O1-
HETATM   54  O8  UNL     1       5.093   4.016  -2.251  1.00  0.00           O  
HETATM   55  C46 UNL     1       5.193   4.578  -0.990  1.00  0.00           C  
HETATM   56  C47 UNL     1       5.822   5.933  -1.159  1.00  0.00           C  
HETATM   57  N1  UNL     1       5.081   6.837  -2.000  1.00  0.00           N1+
HETATM   58  C48 UNL     1       5.752   8.142  -1.862  1.00  0.00           C  
HETATM   59  C49 UNL     1       3.700   6.993  -1.646  1.00  0.00           C  
HETATM   60  C50 UNL     1       5.243   6.495  -3.411  1.00  0.00           C  
HETATM   61  H1  UNL     1       1.513   1.162   0.397  1.00  0.00           H  
HETATM   62  H2  UNL     1       0.833  -0.080   1.543  1.00  0.00           H  
HETATM   63  H3  UNL     1      -0.211   0.718   0.240  1.00  0.00           H  
HETATM   64  H4  UNL     1      -0.580   1.572   2.515  1.00  0.00           H  
HETATM   65  H5  UNL     1      -0.109   2.812   1.235  1.00  0.00           H  
HETATM   66  H6  UNL     1       2.162   2.800   2.004  1.00  0.00           H  
HETATM   67  H7  UNL     1       1.873   1.582   3.246  1.00  0.00           H  
HETATM   68  H8  UNL     1       0.802   4.428   3.072  1.00  0.00           H  
HETATM   69  H9  UNL     1       1.903   3.731   4.285  1.00  0.00           H  
HETATM   70  H10 UNL     1      -1.019   2.809   4.044  1.00  0.00           H  
HETATM   71  H11 UNL     1       0.257   2.214   5.134  1.00  0.00           H  
HETATM   72  H12 UNL     1       0.450   4.401   6.247  1.00  0.00           H  
HETATM   73  H13 UNL     1      -1.550   5.542   6.603  1.00  0.00           H  
HETATM   74  H14 UNL     1      -3.531   4.302   5.761  1.00  0.00           H  
HETATM   75  H15 UNL     1      -2.735   3.808   4.259  1.00  0.00           H  
HETATM   76  H16 UNL     1      -3.285   6.679   5.324  1.00  0.00           H  
HETATM   77  H17 UNL     1      -3.631   7.337   3.104  1.00  0.00           H  
HETATM   78  H18 UNL     1      -4.143   5.452   1.526  1.00  0.00           H  
HETATM   79  H19 UNL     1      -2.811   4.422   2.270  1.00  0.00           H  
HETATM   80  H20 UNL     1      -1.147   6.111   1.650  1.00  0.00           H  
HETATM   81  H21 UNL     1      -2.457   7.149   1.037  1.00  0.00           H  
HETATM   82  H22 UNL     1      -1.731   4.373   0.029  1.00  0.00           H  
HETATM   83  H23 UNL     1      -2.994   5.430  -0.691  1.00  0.00           H  
HETATM   84  H24 UNL     1      -0.012   6.005  -0.575  1.00  0.00           H  
HETATM   85  H25 UNL     1      -1.302   7.161  -1.218  1.00  0.00           H  
HETATM   86  H26 UNL     1      -1.995   5.465  -2.872  1.00  0.00           H  
HETATM   87  H27 UNL     1      -0.752   4.385  -2.194  1.00  0.00           H  
HETATM   88  H28 UNL     1       1.030   6.112  -2.830  1.00  0.00           H  
HETATM   89  H29 UNL     1      -0.259   7.141  -3.445  1.00  0.00           H  
HETATM   90  H30 UNL     1       0.707   6.062  -5.352  1.00  0.00           H  
HETATM   91  H31 UNL     1      -0.976   5.599  -5.106  1.00  0.00           H  
HETATM   92  H32 UNL     1       0.972   1.429  -4.498  1.00  0.00           H  
HETATM   93  H33 UNL     1      -0.221   0.052  -2.780  1.00  0.00           H  
HETATM   94  H34 UNL     1      -0.646   1.571  -1.928  1.00  0.00           H  
HETATM   95  H35 UNL     1      -4.058   2.059  -4.684  1.00  0.00           H  
HETATM   96  H36 UNL     1      -3.418   0.722  -5.647  1.00  0.00           H  
HETATM   97  H37 UNL     1      -5.804   0.675  -5.416  1.00  0.00           H  
HETATM   98  H38 UNL     1      -5.782   0.419  -3.674  1.00  0.00           H  
HETATM   99  H39 UNL     1      -6.189  -1.650  -4.985  1.00  0.00           H  
HETATM  100  H40 UNL     1      -4.690  -1.472  -5.881  1.00  0.00           H  
HETATM  101  H41 UNL     1      -3.289  -1.880  -4.003  1.00  0.00           H  
HETATM  102  H42 UNL     1      -4.696  -1.998  -2.857  1.00  0.00           H  
HETATM  103  H43 UNL     1      -4.156  -3.672  -5.329  1.00  0.00           H  
HETATM  104  H44 UNL     1      -5.628  -3.751  -4.301  1.00  0.00           H  
HETATM  105  H45 UNL     1      -4.372  -4.315  -2.328  1.00  0.00           H  
HETATM  106  H46 UNL     1      -4.051  -5.527  -3.565  1.00  0.00           H  
HETATM  107  H47 UNL     1      -2.231  -3.168  -2.831  1.00  0.00           H  
HETATM  108  H48 UNL     1      -1.892  -4.378  -4.147  1.00  0.00           H  
HETATM  109  H49 UNL     1      -2.077  -6.227  -2.632  1.00  0.00           H  
HETATM  110  H50 UNL     1      -2.607  -5.182  -1.302  1.00  0.00           H  
HETATM  111  H51 UNL     1       0.103  -5.211  -2.773  1.00  0.00           H  
HETATM  112  H52 UNL     1      -0.191  -6.062  -1.245  1.00  0.00           H  
HETATM  113  H53 UNL     1      -0.241  -3.055  -1.893  1.00  0.00           H  
HETATM  114  H54 UNL     1       1.046  -3.903  -1.000  1.00  0.00           H  
HETATM  115  H55 UNL     1      -1.848  -3.376  -0.081  1.00  0.00           H  
HETATM  116  H56 UNL     1      -0.366  -2.572   0.480  1.00  0.00           H  
HETATM  117  H57 UNL     1      -0.926  -5.554   0.948  1.00  0.00           H  
HETATM  118  H58 UNL     1       0.463  -4.625   1.526  1.00  0.00           H  
HETATM  119  H59 UNL     1      -0.995  -3.099   2.760  1.00  0.00           H  
HETATM  120  H60 UNL     1      -2.463  -3.962   2.183  1.00  0.00           H  
HETATM  121  H61 UNL     1      -1.749  -5.976   3.211  1.00  0.00           H  
HETATM  122  H62 UNL     1      -0.237  -5.264   3.844  1.00  0.00           H  
HETATM  123  H63 UNL     1      -3.160  -4.280   4.319  1.00  0.00           H  
HETATM  124  H64 UNL     1      -1.735  -3.400   4.851  1.00  0.00           H  
HETATM  125  H65 UNL     1      -2.873  -4.453   6.609  1.00  0.00           H  
HETATM  126  H66 UNL     1      -1.188  -4.907   6.543  1.00  0.00           H  
HETATM  127  H67 UNL     1      -2.798  -6.708   7.273  1.00  0.00           H  
HETATM  128  H68 UNL     1      -3.693  -6.542   5.764  1.00  0.00           H  
HETATM  129  H69 UNL     1      -2.027  -7.807   4.509  1.00  0.00           H  
HETATM  130  H70 UNL     1      -2.414  -8.552   6.042  1.00  0.00           H  
HETATM  131  H71 UNL     1       0.141  -6.860   5.768  1.00  0.00           H  
HETATM  132  H72 UNL     1      -0.465  -7.910   7.149  1.00  0.00           H  
HETATM  133  H73 UNL     1       1.217  -9.080   5.807  1.00  0.00           H  
HETATM  134  H74 UNL     1      -0.374  -9.871   5.690  1.00  0.00           H  
HETATM  135  H75 UNL     1      -0.717  -8.785   3.408  1.00  0.00           H  
HETATM  136  H76 UNL     1       0.881  -7.999   3.582  1.00  0.00           H  
HETATM  137  H77 UNL     1       0.977 -10.019   2.253  1.00  0.00           H  
HETATM  138  H78 UNL     1       0.356 -10.987   3.656  1.00  0.00           H  
HETATM  139  H79 UNL     1       2.913  -9.321   3.882  1.00  0.00           H  
HETATM  140  H80 UNL     1       2.341 -10.717   4.885  1.00  0.00           H  
HETATM  141  H81 UNL     1       2.862 -10.988   3.210  1.00  0.00           H  
HETATM  142  H82 UNL     1       2.186   0.767  -2.407  1.00  0.00           H  
HETATM  143  H83 UNL     1       1.693   2.300  -1.629  1.00  0.00           H  
HETATM  144  H84 UNL     1       5.813   3.938  -0.311  1.00  0.00           H  
HETATM  145  H85 UNL     1       4.197   4.629  -0.529  1.00  0.00           H  
HETATM  146  H86 UNL     1       5.983   6.449  -0.177  1.00  0.00           H  
HETATM  147  H87 UNL     1       6.831   5.834  -1.638  1.00  0.00           H  
HETATM  148  H88 UNL     1       6.698   8.042  -2.426  1.00  0.00           H  
HETATM  149  H89 UNL     1       5.103   8.945  -2.277  1.00  0.00           H  
HETATM  150  H90 UNL     1       5.949   8.249  -0.780  1.00  0.00           H  
HETATM  151  H91 UNL     1       3.191   7.466  -2.537  1.00  0.00           H  
HETATM  152  H92 UNL     1       3.580   7.750  -0.831  1.00  0.00           H  
HETATM  153  H93 UNL     1       3.153   6.070  -1.427  1.00  0.00           H  
HETATM  154  H94 UNL     1       5.360   7.424  -4.026  1.00  0.00           H  
HETATM  155  H95 UNL     1       4.332   6.011  -3.765  1.00  0.00           H  
HETATM  156  H96 UNL     1       6.118   5.833  -3.562  1.00  0.00           H  
CONECT    1    2   61   62   63
CONECT    2    3   64   65
CONECT    3    4   66   67
CONECT    4    5   68   69
CONECT    5    6   70   71
CONECT    6    7    7   72
CONECT    7    8   73
CONECT    8    9   74   75
CONECT    9   10   10   76
CONECT   10   11   77
CONECT   11   12   78   79
CONECT   12   13   80   81
CONECT   13   14   82   83
CONECT   14   15   84   85
CONECT   15   16   86   87
CONECT   16   17   88   89
CONECT   17   18   90   91
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22   49   92
CONECT   22   23   93   94
CONECT   23   24
CONECT   24   25   25   26
CONECT   26   27   95   96
CONECT   27   28   97   98
CONECT   28   29   99  100
CONECT   29   30  101  102
CONECT   30   31  103  104
CONECT   31   32  105  106
CONECT   32   33  107  108
CONECT   33   34  109  110
CONECT   34   35  111  112
CONECT   35   36  113  114
CONECT   36   37  115  116
CONECT   37   38  117  118
CONECT   38   39  119  120
CONECT   39   40  121  122
CONECT   40   41  123  124
CONECT   41   42  125  126
CONECT   42   43  127  128
CONECT   43   44  129  130
CONECT   44   45  131  132
CONECT   45   46  133  134
CONECT   46   47  135  136
CONECT   47   48  137  138
CONECT   48  139  140  141
CONECT   49   50  142  143
CONECT   50   51
CONECT   51   52   52   53   54
CONECT   54   55
CONECT   55   56  144  145
CONECT   56   57  146  147
CONECT   57   58   59   60
CONECT   58  148  149  150
CONECT   59  151  152  153
CONECT   60  154  155  156
END
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SMILES for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))

CCCCCCCCCCCCCCCCCCCCCCCC(=O)OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC
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INCHI for HMDB0008763 (PC(24:0/18:2(9Z,12Z)))

InChI=1S/C50H96NO8P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-29-30-32-34-36-38-40-42-49(52)56-46-48(47-58-60(54,55)57-45-44-51(3,4)5)59-50(53)43-41-39-37-35-33-31-28-21-19-17-15-13-11-9-7-2/h15,17,21,28,48H,6-14,16,18-20,22-27,29-47H2,1-5H3/b17-15-,28-21-/t48-/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
Phosphatidylcholine(24:0/18:2)HMDB
PC(24:0/18:2)HMDB
Phosphatidylcholine(42:2)HMDB
LecithinHMDB
GPCho(42:2)HMDB
PC(42:2)HMDB
1-Lignoceroyl-2-linoleoyl-sn-glycero-3-phosphocholineHMDB
1-Tetracosanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphocholineHMDB
GPCho(24:0/18:2)HMDB
PC(24:0/18:2(9Z,12Z))Lipid Annotator
Chemical FormulaC50H96NO8P
Average Molecular Weight870.2729
Monoisotopic Molecular Weight869.687355565
IUPAC Nametrimethyl(2-{[(2R)-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-3-(tetracosanoyloxy)propyl phosphonato]oxy}ethyl)azanium
Traditional Namelecithin
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCCCCCCCCCC(=O)OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC
InChI Identifier
InChI=1S/C50H96NO8P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-29-30-32-34-36-38-40-42-49(52)56-46-48(47-58-60(54,55)57-45-44-51(3,4)5)59-50(53)43-41-39-37-35-33-31-28-21-19-17-15-13-11-9-7-2/h15,17,21,28,48H,6-14,16,18-20,22-27,29-47H2,1-5H3/b17-15-,28-21-/t48-/m1/s1
InChI KeyIIGQXTIUKKRHCT-WPYVRAPFSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylcholines. These are glycerophosphocholines in which the two free -OH are attached to one fatty acid each through an ester linkage.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct ParentPhosphatidylcholines
Alternative Parents
Substituents
  • Diacylglycero-3-phosphocholine
  • Phosphocholine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Amine
  • Organic salt
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effect
Health effect
Disposition
Biological locationSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.1e-05 g/LALOGPS
logP6.65ALOGPS
logP11.84ChemAxon
logS-7.6ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-6.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area111.19 ŲChemAxon
Rotatable Bond Count48ChemAxon
Refractivity264.11 m³·mol⁻¹ChemAxon
Polarizability109.75 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+298.30630932474
DeepCCS[M-H]-296.48130932474
DeepCCS[M-2H]-329.7230932474
DeepCCS[M+Na]+303.91230932474
AllCCS[M+H]+308.232859911
AllCCS[M+H-H2O]+308.132859911
AllCCS[M+NH4]+308.332859911
AllCCS[M+Na]+308.332859911
AllCCS[M-H]-295.832859911
AllCCS[M+Na-2H]-300.132859911
AllCCS[M+HCOO]-304.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PC(24:0/18:2(9Z,12Z))CCCCCCCCCCCCCCCCCCCCCCCC(=O)OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC5495.5Standard polar33892256
PC(24:0/18:2(9Z,12Z))CCCCCCCCCCCCCCCCCCCCCCCC(=O)OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC5229.2Standard non polar33892256
PC(24:0/18:2(9Z,12Z))CCCCCCCCCCCCCCCCCCCCCCCC(=O)OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC5746.1Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 10V, Positive-QTOFsplash10-0f79-9054042140-1e98ace42617cff75f612017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 20V, Positive-QTOFsplash10-0w39-7398323110-1ce83f946216cbb26a3f2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 40V, Positive-QTOFsplash10-053i-9044402100-b46c68c00a07624fdd4a2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 10V, Negative-QTOFsplash10-014i-0039000030-ec203d6b56305322df4b2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 20V, Negative-QTOFsplash10-014i-0019000100-76f64bd8cc1f3dcf51a02017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 40V, Negative-QTOFsplash10-00or-7089010000-00412271349fa70659222017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 10V, Positive-QTOFsplash10-0006-0000000090-e605ed621546773b38cf2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 20V, Positive-QTOFsplash10-0006-0000000090-1f36656371040c9029472021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 40V, Positive-QTOFsplash10-0a4k-0900143930-4da2d5e495c1bacff5d62021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 10V, Negative-QTOFsplash10-0udi-0000000009-7cbfab51475788a607c82021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 20V, Negative-QTOFsplash10-0udi-0011000009-0497d04d07d490e5d2cf2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 40V, Negative-QTOFsplash10-0vmi-0099000009-ff8b419ff6745334e95a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 10V, Positive-QTOFsplash10-00di-0000000090-68ac673f23e394c3c1462021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 20V, Positive-QTOFsplash10-00e9-0600000090-d18782d551cf189f549c2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 40V, Positive-QTOFsplash10-001i-1900032030-0898d1aab73d432c75f82021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 10V, Negative-QTOFsplash10-014i-0000000090-c336174e69b9e1796bba2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 20V, Negative-QTOFsplash10-014i-0043003090-66303547698efef5d2e42021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 40V, Negative-QTOFsplash10-014i-3039100000-9f50ea064847b7133c772021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 10V, Positive-QTOFsplash10-004i-0000000090-1a99a84a66e8fb9335dd2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 20V, Positive-QTOFsplash10-004i-0000000090-3c6b6ad511895debb4a62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PC(24:0/18:2(9Z,12Z)) 40V, Positive-QTOFsplash10-002g-0100179030-68695d9af8fc87ec3ee12021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
  • Feces
  • Saliva
  • Urine
Tissue Locations
  • All Tissues
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified0.25 +/- 0.07 uMAdult (>18 years old)BothNormal details
BloodDetected and Quantified0.19 (0.16-0.25) uMNewborn (0-30 days old)Not Available
Normal		 details
BloodDetected and Quantified0.2 (0.17-0.24) uMInfant (0-1 year old)Not Available
Normal		 details
FecesDetected and Quantified0.11 +/- 0.07 nmol/g wet fecesAdult (>18 years old)Both
Normal		 details
FecesDetected and Quantified0.09 +/- 0.05 nmol/g wet fecesAdult (>18 years old)Both
Normal		 details
SalivaDetected and Quantified0.035 +/- 0.003 uMAdult (>18 years old)Both
Normal
    • Zerihun T. Dame, ...
 details
UrineDetected and Quantified0.0009 (0.0003-0.0024) umol/mmol creatinineAdult (>18 years old)Both
Normal		 details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified0.165 +/- 0.066 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
BloodDetected and Quantified0.170 +/- 0.066 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
BloodDetected and Quantified0.2295 (0.2297) uMAdult (>18 years old)FemalePregnancy with fetus having congenital heart defect details
BloodDetected and Quantified0.3178 (0.1022) uMAdult (>18 years old)FemalePregnancy details
Predicted Concentrations
BiospecimenValueOriginal ageOriginal sexOriginal conditionComments
Blood0.099 +/- 0.026 uMAdult (>18 years old)BothNormal (Most Probable)Calculated using MetaboAnalyst
Blood0.667 +/- 0.208 uMAdult (>18 years old)BothNormal (Upper Limit)Calculated using MetaboAnalyst
Associated Disorders and Diseases
Disease References
Pregnancy
  1. Bahado-Singh RO, Ertl R, Mandal R, Bjorndahl TC, Syngelaki A, Han B, Dong E, Liu PB, Alpay-Savasan Z, Wishart DS, Nicolaides KH: Metabolomic prediction of fetal congenital heart defect in the first trimester. Am J Obstet Gynecol. 2014 Sep;211(3):240.e1-240.e14. doi: 10.1016/j.ajog.2014.03.056. Epub 2014 Apr 1. [PubMed:24704061 ]
Obesity
  1. Simone Wahl, Christina Holzapfel, Zhonghao Yu, Michaela Breier, Ivan Kondofersky, Christiane Fuchs, Paula Singmann, Cornelia Prehn, Jerzy Adamski, Harald Grallert, Thomas Illig, Rui Wang-Sattler, Thomas Reinehr (2013). Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children. Metabolomics.
Associated OMIM IDs
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53479441
PDB IDNot Available
ChEBI ID88588
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Only showing the first 10 proteins. There are 78 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Acyl-protein thioesterase 1
General function:
Involved in hydrolase activity
Specific function:
Hydrolyzes fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has depalmitoylating activity and also low lysophospholipase activity.
Gene Name:
LYPLA1
Uniprot ID:
O75608
Molecular weight:
24669.355
Enzyme Details
2. Group XV phospholipase A2
General function:
Involved in phosphatidylcholine-sterol O-acyltransferase activity
Specific function:
Has transacylase and calcium-independent phospholipase A2 activity. Catalyzes the formation of 1-O-acyl-N-acetylsphingosine and the concomitant release of a lyso-phospholipid (By similarity). May have weak lysophospholipase activity.
Gene Name:
PLA2G15
Uniprot ID:
Q8NCC3
Molecular weight:
Not Available
Enzyme Details
3. Calcium-dependent phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. This isozyme hydrolyzes more efficiently L-alpha-1-palmitoyl-2-oleoyl phosphatidylcholine than L-alpha-1-palmitoyl-2-arachidonyl phosphatidylcholine, L-alpha-1-palmitoyl-2-arachidonyl phosphatidylethanolamine, or L-alpha-1-stearoyl-2-arachidonyl phosphatidylinositol. May be involved in the production of lung surfactant, the remodeling or regulation of cardiac muscle.
Gene Name:
PLA2G5
Uniprot ID:
P39877
Molecular weight:
15674.065
Enzyme Details
4. Group IIF secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Hydrolyzes phosphatidylglycerol versus phosphatidylcholine with a 15-fold preference.
Gene Name:
PLA2G2F
Uniprot ID:
Q9BZM2
Molecular weight:
23256.29
Enzyme Details
5. Cytosolic phospholipase A2
General function:
Involved in metabolic process
Specific function:
Selectively hydrolyzes arachidonyl phospholipids in the sn-2 position releasing arachidonic acid. Together with its lysophospholipid activity, it is implicated in the initiation of the inflammatory response.
Gene Name:
PLA2G4A
Uniprot ID:
P47712
Molecular weight:
85210.19
Enzyme Details
6. Phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
Gene Name:
PLA2G1B
Uniprot ID:
P04054
Molecular weight:
16359.535
Enzyme Details
7. Group XIIB secretory phospholipase A2-like protein
General function:
Involved in phospholipase A2 activity
Specific function:
Not known; does not seem to have catalytic activity.
Gene Name:
PLA2G12B
Uniprot ID:
Q9BX93
Molecular weight:
Not Available
Enzyme Details
8. Group 10 secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a powerful potency for releasing arachidonic acid from cell membrane phospholipids. Prefers phosphatidylethanolamine and phosphatidylcholine liposomes to those of phosphatidylserine.
Gene Name:
PLA2G10
Uniprot ID:
O15496
Molecular weight:
18153.04
Enzyme Details
9. Group IIE secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a preference for arachidonic-containing phospholipids.
Gene Name:
PLA2G2E
Uniprot ID:
Q9NZK7
Molecular weight:
15988.525
Enzyme Details
10. Acyl-protein thioesterase 2
General function:
Involved in hydrolase activity
Specific function:
May hydrolyze fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has lysophospholipase activity (By similarity). Deacylates GAP43.
Gene Name:
LYPLA2
Uniprot ID:
O95372
Molecular weight:
24736.71

Transporters

Enzyme Details
1. Multidrug resistance protein 3
General function:
Involved in ATP binding
Specific function:
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Hydrolyzes ATP with low efficiency. Human MDR3 is not capable of conferring drug resistance. Mediates the translocation of phosphatidylcholine across the canalicular membrane of the hepatocyte
Gene Name:
ABCB4
Uniprot ID:
P21439
Molecular weight:
141521.8

Only showing the first 10 proteins. There are 78 proteins in total.

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