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Showing metabocard for PIP3(18:2(9Z,12Z)/20:1(11Z)) (HMDB0010162)

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enzymes (81) Show 81 proteins
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2008-09-12 02:06:08 UTC
Update Date2022-11-30 19:03:49 UTC
HMDB IDHMDB0010162
Secondary Accession Numbers
  • HMDB10162
Metabolite Identification
Common NamePIP3(18:2(9Z,12Z)/20:1(11Z))
DescriptionPIP3(18:2(9Z,12Z)/20:1(11Z)) is a phosphatidylinositol trisphosphate. Phosphatidylinositol trisphosphates are acidic (anionic) phospholipids that consist of a phosphatidic acid backbone, linked via the phosphate group to a trisphosphorylated inositol (hexahydroxycyclohexane). Phosphatidylinositol trisphosphates are generated from phosphatidylinositols, which are phosphorylated by a number of different kinases that place the phosphate moiety on positions 4 and 5 of the inositol ring, although position 3 can also be phosphorylated. Phosphatidylinositols trisphosphates can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 18 and 20 carbons are the most common. PIP3(18:2(9Z,12Z)/20:1(11Z)), in particular, consists of one chain of linoleic acid at the C-1 position and one chain of eicosenoic acid at the C-2 position. The linoleic acid moiety is derived from seed oils, while the eicosenoic acid moiety is derived from vegetable oils and cod oils. The most important phosphatidylinositol trisphosphate in both quantitative and biological terms is phosphatidylinositol 3,4,5-triphosphate. Phosphatidylinositol and the phosphatidylinositol phosphates are the main source of diacylglycerols that serve as signalling molecules, via the action of phospholipase C enzymes. Phosphatidylinositols phosphates are usually present at low levels only in tissues, typically at about 1 to 3% of the concentration of phosphatidylinositol.
Structure
Data?1582752794
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))


  Mrv0541 02241200312D          

 74 74  0  0  1  0            999 V2000
   32.0498   -9.6226    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   32.9212   -8.1945    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   35.0877   -8.7512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   36.3707   -8.1824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   35.4601   -9.6980    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   33.3059   -9.1049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.9067   -9.2933    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.1396   -8.6391    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   36.5540   -9.5526    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   37.1434   -8.6387    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   35.4852   -7.7404    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   33.3121   -7.6151    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.9431   -8.7946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.0854   -9.2898    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   26.2276   -8.7946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.8008   -9.2898    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.3700   -9.2898    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.8532   -8.8558    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   29.4350   -9.7413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.8565   -8.0309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.3619  -10.2933    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.8727  -10.3773    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   37.4563  -10.2621    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   37.4563  -11.0871    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   37.7832   -9.4354    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   38.4241   -9.8524    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   38.0750   -8.2006    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   38.0711   -7.3756    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   38.9146   -8.5809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   38.3872   -8.8808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   36.1637   -7.0435    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   36.1487   -6.2186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   37.0467   -7.3749    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   36.5053   -7.8287    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5094   -9.2899    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2239   -8.8773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9383   -9.2899    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6528   -8.8774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   17.5108   -9.2898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   20.3686   -8.8774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   21.7976   -8.8774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5121   -9.2899    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2266   -8.8774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.9410   -9.2899    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6555   -8.8774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6555   -8.0523    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0724  -10.7058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   21.3606  -10.7058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0751  -10.2933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.7896  -10.7058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.5040  -10.2933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.2185  -10.7058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.9330  -10.2933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.6474  -10.7058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.6474  -11.5308    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  5  6  1  1  0  0  0
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  9  5  1  0  0  0  0
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  3 11  1  0  0  0  0
  6 12  1  0  0  0  0
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 10 27  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
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 11 31  1  0  0  0  0
 36 35  1  0  0  0  0
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 72 73  1  0  0  0  0
 73 21  1  0  0  0  0
 73 74  2  0  0  0  0
M  END
Download

3D MOL for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))

HMDB0010162
     RDKit          3D
PIP3(18:2(9Z,12Z)/20:1(11Z))
161161  0  0  0  0  0  0  0  0999 V2000
    1.8096   -8.9382    3.4555 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5322   -8.1827    3.8180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8540   -7.3902    5.0786 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9923   -6.4522    4.8291 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6787   -5.4461    3.7171 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8573   -4.5951    3.5219 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8712   -3.3169    3.6620 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6990   -2.5097    4.0448 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0421   -1.7887    5.3160 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0550   -0.4843    5.3676 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7577    0.4467    4.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6045    1.4001    4.5995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6739    0.7100    4.9191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7698    1.7545    5.1594 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3943    2.6409    6.2709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3042    3.7264    6.6935 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6495    4.7926    5.7388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4236    4.4496    4.5749 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6642    4.1702    4.7711 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0171    4.3800    3.2420 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9765    4.0483    2.2632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4494    3.9147    0.8706 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6148    3.8058   -0.1055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2183    3.7739   -1.4338 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5908    3.6768   -2.3716 P   0  0  0  0  0  5  0  0  0  0  0  0
   -6.8320    3.8567   -1.4850 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5922    5.0731   -3.3701 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7188    2.3697   -3.3671 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3456    1.1480   -2.8633 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.5049    0.2169   -2.6449 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3128   -0.5635   -1.5051 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.5084   -1.8058   -3.2948 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.6778   -1.1666   -4.5791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5809   -0.4588   -5.7686 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5507   -1.4996   -7.1023 P   0  0  0  0  0  5  0  0  0  0  0  0
   -6.6693   -2.5170   -7.0053 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0637   -2.2828   -7.2583 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8041   -0.5620   -8.4766 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3793   -0.9075   -3.8071 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2894   -1.4756   -4.4677 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3988   -2.5191   -3.5076 P   0  0  0  0  0  5  0  0  0  0  0  0
   -2.1576   -3.7915   -4.3008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8956   -1.9087   -3.0605 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3002   -2.8346   -2.0968 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2731    0.5954   -3.7310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0037    1.0408   -3.4206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5657    2.8645    0.7742 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2480    2.9538    0.4074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7372    4.0388    0.1326 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4802    1.6815    0.3567 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6306    1.0181   -0.9978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1362    1.8044   -2.1482 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4052    2.0457   -2.0777 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7008    2.8683   -3.2854 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0618    3.1881   -3.6818 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9431    3.8365   -2.7112 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3313    2.9519   -1.5775 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2811    3.7974   -0.6789 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7102    2.9272    0.4134 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9798    2.6456    0.6190 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0890    3.1590   -0.1961 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8500    1.9805   -0.8580 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9632    2.4953   -1.6718 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8476    1.5389   -2.3119 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4641    0.5316   -3.2839 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5537   -0.5620   -2.8550 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3209   -1.5260   -4.0349 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))


  Mrv0541 02241200312D          

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M  END
> <DATABASE_ID>
HMDB0010162

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCC\C=C/CCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)COP(O)(=O)O[C@H]1C(O)C(OP(=O)(O)O)C(OP(=O)(O)O)[C@@H](OP(=O)(O)O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C47H88O22P4/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-30-32-34-36-41(49)65-39(37-63-40(48)35-33-31-29-27-25-23-21-18-16-14-12-10-8-6-4-2)38-64-73(61,62)69-44-42(50)45(66-70(52,53)54)47(68-72(58,59)60)46(43(44)51)67-71(55,56)57/h12,14,17-19,21,39,42-47,50-51H,3-11,13,15-16,20,22-38H2,1-2H3,(H,61,62)(H2,52,53,54)(H2,55,56,57)(H2,58,59,60)/b14-12-,19-17-,21-18-/t39-,42?,43?,44-,45+,46?,47?/m1/s1

> <INCHI_KEY>
QEEUXPHLRVCBQV-IVRQCHDLSA-N

> <FORMULA>
C47H88O22P4

> <MOLECULAR_WEIGHT>
1129.0835

> <EXACT_MASS>
1128.471770548

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_AVERAGE_POLARIZABILITY>
117.47346531837326

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(3s,5S)-2,4-dihydroxy-3-({hydroxy[(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy]phosphoryl}oxy)-5,6-bis(phosphonooxy)cyclohexyl]oxy}phosphonic acid

> <ALOGPS_LOGP>
5.11

> <JCHEM_LOGP>
10.205004816000002

> <ALOGPS_LOGS>
-3.88

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-7

> <JCHEM_PKA>
0.8765603748764539

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.3812215552389957

> <JCHEM_PKA_STRONGEST_BASIC>
-3.689092099062057

> <JCHEM_POLAR_SURFACE_AREA>
349.09999999999997

> <JCHEM_REFRACTIVITY>
274.14230000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
47

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.50e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(3s,5S)-2,4-dihydroxy-3-{[hydroxy(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxyphosphoryl]oxy}-5,6-bis(phosphonooxy)cyclohexyl]oxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))

HMDB0010162
     RDKit          3D
PIP3(18:2(9Z,12Z)/20:1(11Z))
161161  0  0  0  0  0  0  0  0999 V2000
    1.8096   -8.9382    3.4555 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5322   -8.1827    3.8180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8540   -7.3902    5.0786 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9923   -6.4522    4.8291 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6787   -5.4461    3.7171 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8573   -4.5951    3.5219 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8712   -3.3169    3.6620 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0421   -1.7887    5.3160 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0618    3.1881   -3.6818 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9431    3.8365   -2.7112 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3313    2.9519   -1.5775 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2811    3.7974   -0.6789 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7102    2.9272    0.4134 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9798    2.6456    0.6190 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0890    3.1590   -0.1961 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8500    1.9805   -0.8580 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9632    2.4953   -1.6718 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8476    1.5389   -2.3119 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4641    0.5316   -3.2839 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5537   -0.5620   -2.8550 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3209   -1.5260   -4.0349 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2661    1.2111   -3.0631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5572    2.8063   -2.2640 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4603    2.6496   -1.1293 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8833    1.0855   -2.0569 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1755    2.3097   -4.1469 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0362    3.7956   -3.2297 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9787    3.8421   -4.6224 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5366    2.2258   -4.1002 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    4.2471   -3.2480 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4540    4.7729   -2.2969 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5705    2.6074   -0.8980 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9370    2.0672   -1.9333 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5973    4.6194   -0.3086 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0335    4.1859   -1.3281 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9526    2.4873    1.0918 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2072    1.9680    1.4755 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8066    3.6348    0.5487 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8608    3.9337   -0.9072 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1494    1.3044   -0.0597 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0608    1.5192   -1.5210 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5992    3.1372   -0.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6064    3.3118   -2.3797 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7161    2.1409   -2.8147 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5004    1.0189   -1.4924 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3897   -0.0101   -3.7021 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0810    1.0312   -4.2327 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6252   -0.3244   -2.3756 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1293   -1.1993   -2.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8449   -0.9843   -4.8822 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2735   -1.9317   -4.4026 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2919   -2.5837   -2.4590 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7989   -3.6330   -3.8007 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4170   -2.5648   -4.0502 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
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  9 10  2  0
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 72158  1  0
 73159  1  0
 73160  1  0
 73161  1  0
M  END
Download

PDB for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      59.826 -17.962   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      61.453 -15.296   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      65.497 -16.336   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      67.892 -15.274   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      66.192 -18.103   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      62.171 -16.996   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      57.693 -17.347   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      59.994 -16.126   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      68.234 -17.832   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      69.334 -16.126   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      66.239 -14.449   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      62.183 -14.215   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      52.160 -16.417   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      50.559 -17.341   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      48.958 -16.417   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      53.761 -17.341   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      47.357 -17.341   0.000  0.00  0.00           O+0
HETATM   18  P   UNK     0      55.726 -16.531   0.000  0.00  0.00           P+0
HETATM   19  O   UNK     0      54.945 -18.184   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      55.732 -14.991   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      49.209 -19.214   0.000  0.00  0.00           O+0
HETATM   22  H   UNK     0      52.029 -19.371   0.000  0.00  0.00           H+0
HETATM   23  P   UNK     0      69.918 -19.156   0.000  0.00  0.00           P+0
HETATM   24  O   UNK     0      69.918 -20.696   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      70.529 -17.613   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      71.725 -18.391   0.000  0.00  0.00           O+0
HETATM   27  P   UNK     0      71.073 -15.308   0.000  0.00  0.00           P+0
HETATM   28  O   UNK     0      71.066 -13.768   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      72.641 -16.018   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      71.656 -16.577   0.000  0.00  0.00           O+0
HETATM   31  P   UNK     0      67.506 -13.148   0.000  0.00  0.00           P+0
HETATM   32  O   UNK     0      67.478 -11.608   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      69.154 -13.766   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      68.143 -14.614   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      23.351 -17.341   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      24.685 -16.571   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      26.018 -17.341   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      27.352 -16.571   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      28.686 -17.341   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      30.019 -16.571   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      31.353 -16.571   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      32.687 -17.341   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      34.020 -16.571   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      35.354 -16.571   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      36.688 -17.341   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      38.021 -16.571   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      39.355 -17.341   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      40.689 -16.571   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      42.023 -17.341   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      43.356 -16.571   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      44.690 -17.341   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      46.024 -16.571   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      46.024 -15.031   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0      22.535 -19.984   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      23.869 -19.214   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      25.202 -19.984   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      26.536 -19.214   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      27.870 -19.984   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      29.203 -19.214   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      30.537 -19.984   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      31.871 -19.214   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      33.205 -19.984   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0      34.538 -19.984   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      35.872 -19.214   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      37.206 -19.984   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      38.539 -19.214   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      39.873 -19.984   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0      41.207 -19.214   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      42.541 -19.984   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0      43.874 -19.214   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0      45.208 -19.984   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0      46.542 -19.214   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0      47.875 -19.984   0.000  0.00  0.00           C+0
HETATM   74  O   UNK     0      47.875 -21.524   0.000  0.00  0.00           O+0
CONECT    1    2    6    7                                                  
CONECT    2    1    3    8                                                  
CONECT    3    2    4   11                                                  
CONECT    4    3    5   10                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    1   12                                                  
CONECT    7    1   18                                                       
CONECT    8    2                                                            
CONECT    9    5   23                                                       
CONECT   10    4   27                                                       
CONECT   11    3   31                                                       
CONECT   12    6                                                            
CONECT   13   14   16                                                       
CONECT   14   13   15   21   22                                             
CONECT   15   14   17                                                       
CONECT   16   13   18                                                       
CONECT   17   15   52                                                       
CONECT   18   16   19   20    7                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   14   73                                                       
CONECT   22   14                                                            
CONECT   23    9   24   25   26                                             
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   23                                                            
CONECT   27   28   29   30   10                                             
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   27                                                            
CONECT   31   32   33   34   11                                             
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   31                                                            
CONECT   35   36                                                            
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53   17                                                  
CONECT   53   52                                                            
CONECT   54   55                                                            
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64                                                       
CONECT   64   63   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   67                                                       
CONECT   67   66   68                                                       
CONECT   68   67   69                                                       
CONECT   69   68   70                                                       
CONECT   70   69   71                                                       
CONECT   71   70   72                                                       
CONECT   72   71   73                                                       
CONECT   73   72   21   74                                                  
CONECT   74   73                                                            
MASTER        0    0    0    0    0    0    0    0   74    0  148    0
END
Download

3D PDB for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))

COMPND    HMDB0010162
HETATM    1  C1  UNL     1       1.810  -8.938   3.455  1.00  0.00           C  
HETATM    2  C2  UNL     1       0.532  -8.183   3.818  1.00  0.00           C  
HETATM    3  C3  UNL     1       0.854  -7.390   5.079  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.992  -6.452   4.829  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.679  -5.446   3.717  1.00  0.00           C  
HETATM    6  C6  UNL     1       2.857  -4.595   3.522  1.00  0.00           C  
HETATM    7  C7  UNL     1       2.871  -3.317   3.662  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.699  -2.510   4.045  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.042  -1.789   5.316  1.00  0.00           C  
HETATM   10  C10 UNL     1       2.055  -0.484   5.368  1.00  0.00           C  
HETATM   11  C11 UNL     1       1.758   0.447   4.274  1.00  0.00           C  
HETATM   12  C12 UNL     1       0.605   1.400   4.600  1.00  0.00           C  
HETATM   13  C13 UNL     1      -0.674   0.710   4.919  1.00  0.00           C  
HETATM   14  C14 UNL     1      -1.770   1.755   5.159  1.00  0.00           C  
HETATM   15  C15 UNL     1      -1.394   2.641   6.271  1.00  0.00           C  
HETATM   16  C16 UNL     1      -2.304   3.726   6.693  1.00  0.00           C  
HETATM   17  C17 UNL     1      -2.650   4.793   5.739  1.00  0.00           C  
HETATM   18  C18 UNL     1      -3.424   4.450   4.575  1.00  0.00           C  
HETATM   19  O1  UNL     1      -4.664   4.170   4.771  1.00  0.00           O  
HETATM   20  O2  UNL     1      -3.017   4.380   3.242  1.00  0.00           O  
HETATM   21  C19 UNL     1      -3.977   4.048   2.263  1.00  0.00           C  
HETATM   22  C20 UNL     1      -3.449   3.915   0.871  1.00  0.00           C  
HETATM   23  C21 UNL     1      -4.615   3.806  -0.106  1.00  0.00           C  
HETATM   24  O3  UNL     1      -4.218   3.774  -1.434  1.00  0.00           O  
HETATM   25  P1  UNL     1      -5.591   3.677  -2.372  1.00  0.00           P  
HETATM   26  O4  UNL     1      -6.832   3.857  -1.485  1.00  0.00           O  
HETATM   27  O5  UNL     1      -5.592   5.073  -3.370  1.00  0.00           O  
HETATM   28  O6  UNL     1      -5.719   2.370  -3.367  1.00  0.00           O  
HETATM   29  C22 UNL     1      -5.346   1.148  -2.863  1.00  0.00           C  
HETATM   30  C23 UNL     1      -6.505   0.217  -2.645  1.00  0.00           C  
HETATM   31  O7  UNL     1      -6.313  -0.564  -1.505  1.00  0.00           O  
HETATM   32  C24 UNL     1      -6.838  -0.675  -3.796  1.00  0.00           C  
HETATM   33  O8  UNL     1      -7.508  -1.806  -3.295  1.00  0.00           O  
HETATM   34  P2  UNL     1      -9.089  -1.912  -3.822  1.00  0.00           P  
HETATM   35  O9  UNL     1      -9.201  -2.121  -5.298  1.00  0.00           O  
HETATM   36  O10 UNL     1      -9.767  -3.287  -3.085  1.00  0.00           O  
HETATM   37  O11 UNL     1      -9.925  -0.540  -3.304  1.00  0.00           O  
HETATM   38  C25 UNL     1      -5.678  -1.167  -4.579  1.00  0.00           C  
HETATM   39  O12 UNL     1      -5.581  -0.459  -5.769  1.00  0.00           O  
HETATM   40  P3  UNL     1      -5.551  -1.500  -7.102  1.00  0.00           P  
HETATM   41  O13 UNL     1      -6.669  -2.517  -7.005  1.00  0.00           O  
HETATM   42  O14 UNL     1      -4.064  -2.283  -7.258  1.00  0.00           O  
HETATM   43  O15 UNL     1      -5.804  -0.562  -8.477  1.00  0.00           O  
HETATM   44  C26 UNL     1      -4.379  -0.907  -3.807  1.00  0.00           C  
HETATM   45  O16 UNL     1      -3.289  -1.476  -4.468  1.00  0.00           O  
HETATM   46  P4  UNL     1      -2.399  -2.519  -3.508  1.00  0.00           P  
HETATM   47  O17 UNL     1      -2.158  -3.792  -4.301  1.00  0.00           O  
HETATM   48  O18 UNL     1      -0.896  -1.909  -3.060  1.00  0.00           O  
HETATM   49  O19 UNL     1      -3.300  -2.835  -2.097  1.00  0.00           O  
HETATM   50  C27 UNL     1      -4.273   0.595  -3.731  1.00  0.00           C  
HETATM   51  O20 UNL     1      -3.004   1.041  -3.421  1.00  0.00           O  
HETATM   52  O21 UNL     1      -2.566   2.864   0.774  1.00  0.00           O  
HETATM   53  C28 UNL     1      -1.248   2.954   0.407  1.00  0.00           C  
HETATM   54  O22 UNL     1      -0.737   4.039   0.133  1.00  0.00           O  
HETATM   55  C29 UNL     1      -0.480   1.682   0.357  1.00  0.00           C  
HETATM   56  C30 UNL     1      -0.631   1.018  -0.998  1.00  0.00           C  
HETATM   57  C31 UNL     1      -0.136   1.804  -2.148  1.00  0.00           C  
HETATM   58  C32 UNL     1       1.405   2.046  -2.078  1.00  0.00           C  
HETATM   59  C33 UNL     1       1.701   2.868  -3.285  1.00  0.00           C  
HETATM   60  C34 UNL     1       3.062   3.188  -3.682  1.00  0.00           C  
HETATM   61  C35 UNL     1       3.943   3.837  -2.711  1.00  0.00           C  
HETATM   62  C36 UNL     1       4.331   2.952  -1.578  1.00  0.00           C  
HETATM   63  C37 UNL     1       5.281   3.797  -0.679  1.00  0.00           C  
HETATM   64  C38 UNL     1       5.710   2.927   0.413  1.00  0.00           C  
HETATM   65  C39 UNL     1       6.980   2.646   0.619  1.00  0.00           C  
HETATM   66  C40 UNL     1       8.089   3.159  -0.196  1.00  0.00           C  
HETATM   67  C41 UNL     1       8.850   1.980  -0.858  1.00  0.00           C  
HETATM   68  C42 UNL     1       9.963   2.495  -1.672  1.00  0.00           C  
HETATM   69  C43 UNL     1      10.848   1.539  -2.312  1.00  0.00           C  
HETATM   70  C44 UNL     1      10.464   0.532  -3.284  1.00  0.00           C  
HETATM   71  C45 UNL     1       9.554  -0.562  -2.855  1.00  0.00           C  
HETATM   72  C46 UNL     1       9.321  -1.526  -4.035  1.00  0.00           C  
HETATM   73  C47 UNL     1       8.405  -2.611  -3.577  1.00  0.00           C  
HETATM   74  H1  UNL     1       2.549  -8.249   2.970  1.00  0.00           H  
HETATM   75  H2  UNL     1       1.622  -9.746   2.709  1.00  0.00           H  
HETATM   76  H3  UNL     1       2.266  -9.419   4.349  1.00  0.00           H  
HETATM   77  H4  UNL     1       0.227  -7.549   2.990  1.00  0.00           H  
HETATM   78  H5  UNL     1      -0.246  -8.938   4.052  1.00  0.00           H  
HETATM   79  H6  UNL     1      -0.059  -6.835   5.434  1.00  0.00           H  
HETATM   80  H7  UNL     1       1.121  -8.134   5.854  1.00  0.00           H  
HETATM   81  H8  UNL     1       2.169  -5.849   5.756  1.00  0.00           H  
HETATM   82  H9  UNL     1       2.898  -7.020   4.546  1.00  0.00           H  
HETATM   83  H10 UNL     1       1.583  -6.066   2.763  1.00  0.00           H  
HETATM   84  H11 UNL     1       0.738  -4.989   3.973  1.00  0.00           H  
HETATM   85  H12 UNL     1       3.781  -5.159   3.233  1.00  0.00           H  
HETATM   86  H13 UNL     1       3.818  -2.774   3.488  1.00  0.00           H  
HETATM   87  H14 UNL     1       0.819  -3.148   4.178  1.00  0.00           H  
HETATM   88  H15 UNL     1       1.447  -1.826   3.217  1.00  0.00           H  
HETATM   89  H16 UNL     1       2.278  -2.387   6.183  1.00  0.00           H  
HETATM   90  H17 UNL     1       2.320  -0.007   6.337  1.00  0.00           H  
HETATM   91  H18 UNL     1       2.646   1.155   4.153  1.00  0.00           H  
HETATM   92  H19 UNL     1       1.549   0.010   3.298  1.00  0.00           H  
HETATM   93  H20 UNL     1       0.540   2.143   3.807  1.00  0.00           H  
HETATM   94  H21 UNL     1       0.983   1.920   5.534  1.00  0.00           H  
HETATM   95  H22 UNL     1      -0.627   0.062   5.804  1.00  0.00           H  
HETATM   96  H23 UNL     1      -1.018   0.094   4.056  1.00  0.00           H  
HETATM   97  H24 UNL     1      -2.679   1.165   5.462  1.00  0.00           H  
HETATM   98  H25 UNL     1      -2.022   2.238   4.228  1.00  0.00           H  
HETATM   99  H26 UNL     1      -0.392   3.114   6.001  1.00  0.00           H  
HETATM  100  H27 UNL     1      -1.140   2.024   7.185  1.00  0.00           H  
HETATM  101  H28 UNL     1      -1.856   4.192   7.615  1.00  0.00           H  
HETATM  102  H29 UNL     1      -3.265   3.282   7.094  1.00  0.00           H  
HETATM  103  H30 UNL     1      -1.661   5.300   5.426  1.00  0.00           H  
HETATM  104  H31 UNL     1      -3.162   5.642   6.315  1.00  0.00           H  
HETATM  105  H32 UNL     1      -4.537   3.112   2.547  1.00  0.00           H  
HETATM  106  H33 UNL     1      -4.780   4.846   2.325  1.00  0.00           H  
HETATM  107  H34 UNL     1      -2.866   4.854   0.629  1.00  0.00           H  
HETATM  108  H35 UNL     1      -5.220   2.940   0.203  1.00  0.00           H  
HETATM  109  H36 UNL     1      -5.249   4.712   0.114  1.00  0.00           H  
HETATM  110  H37 UNL     1      -6.325   4.926  -4.031  1.00  0.00           H  
HETATM  111  H38 UNL     1      -4.923   1.328  -1.852  1.00  0.00           H  
HETATM  112  H39 UNL     1      -7.396   0.851  -2.441  1.00  0.00           H  
HETATM  113  H40 UNL     1      -6.685  -1.455  -1.563  1.00  0.00           H  
HETATM  114  H41 UNL     1      -7.564  -0.168  -4.464  1.00  0.00           H  
HETATM  115  H42 UNL     1     -10.465  -2.997  -2.454  1.00  0.00           H  
HETATM  116  H43 UNL     1      -9.532   0.219  -3.797  1.00  0.00           H  
HETATM  117  H44 UNL     1      -5.728  -2.278  -4.774  1.00  0.00           H  
HETATM  118  H45 UNL     1      -3.451  -1.815  -7.881  1.00  0.00           H  
HETATM  119  H46 UNL     1      -4.953  -0.432  -8.960  1.00  0.00           H  
HETATM  120  H47 UNL     1      -4.408  -1.286  -2.785  1.00  0.00           H  
HETATM  121  H48 UNL     1      -0.237  -2.665  -3.031  1.00  0.00           H  
HETATM  122  H49 UNL     1      -3.777  -3.683  -2.230  1.00  0.00           H  
HETATM  123  H50 UNL     1      -4.470   0.964  -4.784  1.00  0.00           H  
HETATM  124  H51 UNL     1      -2.371   0.703  -4.087  1.00  0.00           H  
HETATM  125  H52 UNL     1      -0.887   0.943   1.107  1.00  0.00           H  
HETATM  126  H53 UNL     1       0.580   1.831   0.624  1.00  0.00           H  
HETATM  127  H54 UNL     1      -1.653   0.661  -1.080  1.00  0.00           H  
HETATM  128  H55 UNL     1       0.011   0.091  -0.931  1.00  0.00           H  
HETATM  129  H56 UNL     1      -0.266   1.211  -3.063  1.00  0.00           H  
HETATM  130  H57 UNL     1      -0.557   2.806  -2.264  1.00  0.00           H  
HETATM  131  H58 UNL     1       1.460   2.650  -1.129  1.00  0.00           H  
HETATM  132  H59 UNL     1       1.883   1.085  -2.057  1.00  0.00           H  
HETATM  133  H60 UNL     1       1.176   2.310  -4.147  1.00  0.00           H  
HETATM  134  H61 UNL     1       1.036   3.796  -3.230  1.00  0.00           H  
HETATM  135  H62 UNL     1       2.979   3.842  -4.622  1.00  0.00           H  
HETATM  136  H63 UNL     1       3.537   2.226  -4.100  1.00  0.00           H  
HETATM  137  H64 UNL     1       4.840   4.247  -3.248  1.00  0.00           H  
HETATM  138  H65 UNL     1       3.454   4.773  -2.297  1.00  0.00           H  
HETATM  139  H66 UNL     1       3.570   2.607  -0.898  1.00  0.00           H  
HETATM  140  H67 UNL     1       4.937   2.067  -1.933  1.00  0.00           H  
HETATM  141  H68 UNL     1       4.597   4.619  -0.309  1.00  0.00           H  
HETATM  142  H69 UNL     1       6.033   4.186  -1.328  1.00  0.00           H  
HETATM  143  H70 UNL     1       4.953   2.487   1.092  1.00  0.00           H  
HETATM  144  H71 UNL     1       7.207   1.968   1.475  1.00  0.00           H  
HETATM  145  H72 UNL     1       8.807   3.635   0.549  1.00  0.00           H  
HETATM  146  H73 UNL     1       7.861   3.934  -0.907  1.00  0.00           H  
HETATM  147  H74 UNL     1       9.149   1.304  -0.060  1.00  0.00           H  
HETATM  148  H75 UNL     1       8.061   1.519  -1.521  1.00  0.00           H  
HETATM  149  H76 UNL     1      10.599   3.137  -0.945  1.00  0.00           H  
HETATM  150  H77 UNL     1       9.606   3.312  -2.380  1.00  0.00           H  
HETATM  151  H78 UNL     1      11.716   2.141  -2.815  1.00  0.00           H  
HETATM  152  H79 UNL     1      11.500   1.019  -1.492  1.00  0.00           H  
HETATM  153  H80 UNL     1      11.390  -0.010  -3.702  1.00  0.00           H  
HETATM  154  H81 UNL     1      10.081   1.031  -4.233  1.00  0.00           H  
HETATM  155  H82 UNL     1       8.625  -0.324  -2.376  1.00  0.00           H  
HETATM  156  H83 UNL     1      10.129  -1.199  -2.114  1.00  0.00           H  
HETATM  157  H84 UNL     1       8.845  -0.984  -4.882  1.00  0.00           H  
HETATM  158  H85 UNL     1      10.274  -1.932  -4.403  1.00  0.00           H  
HETATM  159  H86 UNL     1       8.292  -2.584  -2.459  1.00  0.00           H  
HETATM  160  H87 UNL     1       8.799  -3.633  -3.801  1.00  0.00           H  
HETATM  161  H88 UNL     1       7.417  -2.565  -4.050  1.00  0.00           H  
CONECT    1    2   74   75   76
CONECT    2    3   77   78
CONECT    3    4   79   80
CONECT    4    5   81   82
CONECT    5    6   83   84
CONECT    6    7    7   85
CONECT    7    8   86
CONECT    8    9   87   88
CONECT    9   10   10   89
CONECT   10   11   90
CONECT   11   12   91   92
CONECT   12   13   93   94
CONECT   13   14   95   96
CONECT   14   15   97   98
CONECT   15   16   99  100
CONECT   16   17  101  102
CONECT   17   18  103  104
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22  105  106
CONECT   22   23   52  107
CONECT   23   24  108  109
CONECT   24   25
CONECT   25   26   26   27   28
CONECT   27  110
CONECT   28   29
CONECT   29   30   50  111
CONECT   30   31   32  112
CONECT   31  113
CONECT   32   33   38  114
CONECT   33   34
CONECT   34   35   35   36   37
CONECT   36  115
CONECT   37  116
CONECT   38   39   44  117
CONECT   39   40
CONECT   40   41   41   42   43
CONECT   42  118
CONECT   43  119
CONECT   44   45   50  120
CONECT   45   46
CONECT   46   47   47   48   49
CONECT   48  121
CONECT   49  122
CONECT   50   51  123
CONECT   51  124
CONECT   52   53
CONECT   53   54   54   55
CONECT   55   56  125  126
CONECT   56   57  127  128
CONECT   57   58  129  130
CONECT   58   59  131  132
CONECT   59   60  133  134
CONECT   60   61  135  136
CONECT   61   62  137  138
CONECT   62   63  139  140
CONECT   63   64  141  142
CONECT   64   65   65  143
CONECT   65   66  144
CONECT   66   67  145  146
CONECT   67   68  147  148
CONECT   68   69  149  150
CONECT   69   70  151  152
CONECT   70   71  153  154
CONECT   71   72  155  156
CONECT   72   73  157  158
CONECT   73  159  160  161
END
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SMILES for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))

CCCCCCCC\C=C/CCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)COP(O)(=O)O[C@H]1C(O)C(OP(=O)(O)O)C(OP(=O)(O)O)[C@@H](OP(=O)(O)O)C1O
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INCHI for HMDB0010162 (PIP3(18:2(9Z,12Z)/20:1(11Z)))

InChI=1S/C47H88O22P4/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-30-32-34-36-41(49)65-39(37-63-40(48)35-33-31-29-27-25-23-21-18-16-14-12-10-8-6-4-2)38-64-73(61,62)69-44-42(50)45(66-70(52,53)54)47(68-72(58,59)60)46(43(44)51)67-71(55,56)57/h12,14,17-19,21,39,42-47,50-51H,3-11,13,15-16,20,22-38H2,1-2H3,(H,61,62)(H2,52,53,54)(H2,55,56,57)(H2,58,59,60)/b14-12-,19-17-,21-18-/t39-,42?,43?,44-,45+,46?,47?/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
1-(9Z,12Z-Octadecadienoyl)-2-(11-eicosenoyl)-sn-glycero-3-phospho-(1'-myo-inositol-3',4',5'-trisphosphate)HMDB
1-Linoleoyl-2-eicosenoyl-sn-glycero-3-phosphoinositol-trisphosphateHMDB
Phosphatidylinositol triphosphate(18:2/20:1)HMDB
Phosphatidylinositol triphosphate(18:2n6/20:1n9)HMDB
Phosphatidylinositol triphosphate(18:2W6/20:1W9)HMDB
Phosphatidylinositol triphosphate(38:3)HMDB
PIP3(18:2/20:1)HMDB
PIP3(18:2n6/20:1n9)HMDB
PIP3(18:2W6/20:1W9)HMDB
PIP3(38:3)HMDB
PIP3[3',4',5'](18:2(9Z,12Z)/20:1(11Z))HMDB
{[(1S,3S)-2,4-dihydroxy-3-({hydroxy[(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy]phosphoryl}oxy)-5,6-bis(phosphonooxy)cyclohexyl]oxy}phosphonateHMDB
Chemical FormulaC47H88O22P4
Average Molecular Weight1129.0835
Monoisotopic Molecular Weight1128.471770548
IUPAC Name{[(3s,5S)-2,4-dihydroxy-3-({hydroxy[(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy]phosphoryl}oxy)-5,6-bis(phosphonooxy)cyclohexyl]oxy}phosphonic acid
Traditional Name[(3s,5S)-2,4-dihydroxy-3-{[hydroxy(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxyphosphoryl]oxy}-5,6-bis(phosphonooxy)cyclohexyl]oxyphosphonic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCC\C=C/CCCCCCCCCC(=O)O[C@]([H])(COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)COP(O)(=O)O[C@H]1C(O)C(OP(=O)(O)O)C(OP(=O)(O)O)[C@@H](OP(=O)(O)O)C1O
InChI Identifier
InChI=1S/C47H88O22P4/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-30-32-34-36-41(49)65-39(37-63-40(48)35-33-31-29-27-25-23-21-18-16-14-12-10-8-6-4-2)38-64-73(61,62)69-44-42(50)45(66-70(52,53)54)47(68-72(58,59)60)46(43(44)51)67-71(55,56)57/h12,14,17-19,21,39,42-47,50-51H,3-11,13,15-16,20,22-38H2,1-2H3,(H,61,62)(H2,52,53,54)(H2,55,56,57)(H2,58,59,60)/b14-12-,19-17-,21-18-/t39-,42?,43?,44-,45+,46?,47?/m1/s1
InChI KeyQEEUXPHLRVCBQV-IVRQCHDLSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylinositol-3,4,5-trisphosphates. These are phosphatidylinositol bisphosphates in which the inositol moiety is substituted by a phosphate group at the C-3, C-4, and C-5 positions.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoinositol phosphates
Direct ParentPhosphatidylinositol-3,4,5-trisphosphates
Alternative Parents
Substituents
  • Diacylglycerophosphoinositol-3,4,5-trisphosphate
  • Diacylglycerophosphoinositol
  • Glycerophosphoinositol
  • Inositol phosphate
  • Cyclohexanol
  • Dialkyl phosphate
  • Monoalkyl phosphate
  • Fatty acid ester
  • Cyclitol or derivatives
  • Dicarboxylic acid or derivatives
  • Fatty acyl
  • Alkyl phosphate
  • Phosphoric acid ester
  • Organic phosphoric acid derivative
  • Cyclic alcohol
  • Secondary alcohol
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Hydrocarbon derivative
  • Organic oxide
  • Alcohol
  • Carbonyl group
  • Organic oxygen compound
  • Organooxygen compound
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.15 g/LALOGPS
logP5.11ALOGPS
logP10.21ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)0.38ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-7ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area349.1 ŲChemAxon
Rotatable Bond Count47ChemAxon
Refractivity274.14 m³·mol⁻¹ChemAxon
Polarizability117.47 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+350.84530932474
DeepCCS[M-H]-348.1430932474
DeepCCS[M-2H]-383.77930932474
DeepCCS[M+Na]+358.49930932474
AllCCS[M+H]+327.832859911
AllCCS[M+H-H2O]+328.432859911
AllCCS[M+NH4]+327.332859911
AllCCS[M+Na]+327.132859911
AllCCS[M-H]-322.232859911
AllCCS[M+Na-2H]-328.532859911
AllCCS[M+HCOO]-335.232859911

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PIP3(18:2(9Z,12Z)/20:1(11Z)) 10V, Positive-QTOFsplash10-004i-9801001000-a394c71e7fdbbb0b94712021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PIP3(18:2(9Z,12Z)/20:1(11Z)) 20V, Positive-QTOFsplash10-0zfr-9200000001-e4f69ed4f6b0bd2607702021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PIP3(18:2(9Z,12Z)/20:1(11Z)) 40V, Positive-QTOFsplash10-000t-1312000950-a99b1d4187bb9ed8a1f12021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PIP3(18:2(9Z,12Z)/20:1(11Z)) 10V, Negative-QTOFsplash10-004i-0900000000-6321c9b99b893777a8762021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PIP3(18:2(9Z,12Z)/20:1(11Z)) 20V, Negative-QTOFsplash10-056r-5342300190-bad9a6859f8cfa7f0fc42021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PIP3(18:2(9Z,12Z)/20:1(11Z)) 40V, Negative-QTOFsplash10-0kdi-9021130000-c3dabb9523b3079e36cc2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue Locations
  • All Tissues
  • Brain
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB027345
KNApSAcK IDNot Available
Chemspider ID24768039
KEGG Compound IDC00626
BioCyc IDPhosphatidylinositols
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Only showing the first 10 proteins. There are 81 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB1
Uniprot ID:
Q9NQ66
Molecular weight:
138565.805
Enzyme Details
2. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:
PLCB4
Uniprot ID:
Q15147
Molecular weight:
136105.065
Enzyme Details
3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB2
Uniprot ID:
Q00722
Molecular weight:
134023.21
Enzyme Details
4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB3
Uniprot ID:
Q01970
Molecular weight:
138797.725
Enzyme Details
5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2
General function:
Involved in phosphoinositide phospholipase C activity
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. It is a crucial enzyme in transmembrane signaling.
Gene Name:
PLCG2
Uniprot ID:
P16885
Molecular weight:
147868.67
Enzyme Details
6. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1
General function:
Involved in calcium ion binding
Specific function:
Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. Becomes activated in response to ligand-mediated activation of receptor-type tyrosine kinases, such as PDGFRA, PDGFRB, FGFR1, FGFR2, FGFR3 and FGFR4. Plays a role in actin reorganization and cell migration.
Gene Name:
PLCG1
Uniprot ID:
P19174
Molecular weight:
148658.92
Enzyme Details
7. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. Essential for trophoblast and placental development.
Gene Name:
PLCD1
Uniprot ID:
P51178
Molecular weight:
88134.23
Enzyme Details
8. N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
General function:
Involved in N-acetylglucosaminylphosphatidylinositol de
Specific function:
Involved in the second step of GPI biosynthesis. De-N-acetylation of N-acetylglucosaminyl-phosphatidylinositol.
Gene Name:
PIGL
Uniprot ID:
Q9Y2B2
Molecular weight:
28530.965
Enzyme Details
9. Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGQ
Uniprot ID:
Q9BRB3
Molecular weight:
65343.25
Enzyme Details
10. Phosphatidylinositol N-acetylglucosaminyltransferase subunit A
General function:
Involved in biosynthetic process
Specific function:
Necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, the very early intermediate in GPI-anchor biosynthesis.
Gene Name:
PIGA
Uniprot ID:
P37287
Molecular weight:
54126.065

Only showing the first 10 proteins. There are 81 proteins in total.

Show all enzymes and transporters