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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (131)transporters (1) Show 132 proteins XML

enzymes (131)transporters (1) Show 132 proteins

Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-18 02:25:43 UTC

Update Date

2022-11-30 20:09:06 UTC

HMDB ID

HMDB0294593

Secondary Accession Numbers

None

Metabolite Identification

Common Name

DG(10:0/PGD1/0:0)

Description

DG(10:0/PGD1/0:0) belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on DG(10:0/PGD1/0:0).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309182104262D          

 41 41  0  0  1  0            999 V2000
    4.0815  -13.6190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3670  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3670  -12.3815    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6525  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9381  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2236  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5091  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2053  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9198  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6343  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3488  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0632  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7960  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5104  -13.6190    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5104  -14.4440    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2249  -14.8565    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2249  -13.2065    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9394  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9394  -14.4440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6538  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3683  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0828  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7973  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5117  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2262  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9407  -13.2065    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.0269  -12.3860    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4138  -11.8340    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8339  -12.2145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2464  -12.9290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0669  -13.0152    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.6943  -13.5421    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.8659  -14.3490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2528  -14.9011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4243  -15.7080    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.8112  -16.2601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.2089  -15.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3804  -16.7700    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1651  -17.0249    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3366  -17.8319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1212  -18.0868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  1 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  1  0  0  0
 27 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 26 32  1  0  0  0  0
 32 33  1  6  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  6  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
M  END

HMDB0294593
     RDKit          3D
DG(10:0/PGD1/0:0)
 99 99  0  0  0  0  0  0  0  0999 V2000
  -12.8483    2.7948    2.4919 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5693    1.6658    1.8578 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0967    1.2476    0.5077 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7319    0.7106    0.3769 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6068    1.5839    0.7647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2639    0.9036    0.4977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1470   -0.3719    1.2829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8241   -1.0639    1.0674 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5988   -1.4349   -0.3715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3004   -2.1141   -0.4967 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1812   -3.3255   -0.1304 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1507   -1.4916   -1.0107 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9444   -2.2400   -1.0908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8907   -1.3106   -1.6843 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3873   -1.0019   -3.1037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4899   -2.2224   -3.7668 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6583   -1.9357   -1.8264 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4613   -1.4772   -1.3653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4173   -0.3812   -0.7433 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7664   -2.2789   -1.6057 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4979   -1.8165   -2.8199 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9843   -0.4149   -2.8004 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9696   -0.0833   -1.7133 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2178   -0.9113   -1.7968 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2490   -0.6277   -0.7734 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7943   -0.8341    0.6216 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3402   -2.2187    0.9625 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3435   -3.1533    0.6242 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3563   -2.1705    2.4974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3356   -1.1219    2.8464 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5682   -0.6860    3.9437 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9882   -0.6967    1.5866 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5399    0.6622    1.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8316    0.7969    1.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5201    2.1274    1.2300 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7805    3.0934    1.8975 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8582    1.9536    1.9160 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7416    0.9780    1.2434 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1939    1.2477   -0.1351 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0913    2.4209   -0.3586 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5188    3.7416    0.0183 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2046    2.5121    3.3516 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -13.8251    0.5037    0.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6831   -0.2085    1.0213 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6168    0.3331   -0.6724 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6292    1.7301    1.8743 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5565    2.5639    0.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1790    0.6911   -0.6049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4844    1.6265    0.7587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2589   -0.1642    2.3501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9156   -1.0936    0.9007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8696   -2.0191    1.6401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9865   -0.4733    1.4940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6781   -0.5712   -1.0743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3910   -2.1749   -0.6434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6699   -2.5186   -0.0537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0672   -3.1052   -1.7541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7748   -0.3778   -1.1339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6640   -0.3113   -3.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3451   -0.4811   -2.9865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8347   -2.8682   -3.4147 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4450   -3.3257   -1.7838 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3787   -2.1867   -0.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3471   -1.9756    2.8998 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9884    1.5253    1.8982 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4060   -0.0646    0.9507 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7036    2.3673    0.1638 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8011    3.9438    1.3629 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3827    2.8791    2.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5958    1.5035    2.9264 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6898    0.9186    1.8843 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3700   -0.0755    1.2864 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8133    0.3406   -0.4447 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3560    1.2203   -0.8856 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0540    2.2597    0.2043 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4115    2.4325   -1.4549 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9195    4.5018   -0.7428 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9560    4.1397    0.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4429    3.8528   -0.0304 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
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 32 84  1  6
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 38 92  1  0
 39 93  1  0
 39 94  1  0
 40 95  1  0
 40 96  1  0
 41 97  1  0
 41 98  1  0
 41 99  1  0
M  END


  Mrv1652309182104262D          

 41 41  0  0  1  0            999 V2000
    4.0815  -13.6190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3670  -13.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3670  -12.3815    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6525  -13.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 22 23  1  0  0  0  0
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 26 25  1  1  0  0  0
 26 27  1  0  0  0  0
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 30 32  1  0  0  0  0
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 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0294593

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCC(=O)OC[C@H](CO)OC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C33H58O8/c1-3-5-7-8-9-10-15-19-32(38)40-25-27(24-34)41-33(39)20-16-12-11-14-18-28-29(31(37)23-30(28)36)22-21-26(35)17-13-6-4-2/h21-22,26-30,34-36H,3-20,23-25H2,1-2H3/b22-21+/t26-,27-,28+,29+,30-/m0/s1

> <INCHI_KEY>
CJVKFQYIFDGHGR-AKDCUWDLSA-N

> <FORMULA>
C33H58O8

> <MOLECULAR_WEIGHT>
582.819

> <EXACT_MASS>
582.413168828

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
99

> <JCHEM_AVERAGE_POLARIZABILITY>
70.49298839624305

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-3-hydroxy-2-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl decanoate

> <ALOGPS_LOGP>
5.59

> <JCHEM_LOGP>
6.666290807999998

> <ALOGPS_LOGS>
-5.48

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.710114412550638

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.043431580887248

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5973943599725011

> <JCHEM_POLAR_SURFACE_AREA>
130.36

> <JCHEM_REFRACTIVITY>
161.32779999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
27

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.93e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-3-hydroxy-2-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl decanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0294593
     RDKit          3D
DG(10:0/PGD1/0:0)
 99 99  0  0  0  0  0  0  0  0999 V2000
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 39 93  1  0
 39 94  1  0
 40 95  1  0
 40 96  1  0
 41 97  1  0
 41 98  1  0
 41 99  1  0
M  END

HEADER    PROTEIN                                 18-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-SEP-21         0                                  
HETATM    1  O   UNK     0       7.619 -25.422   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       6.285 -24.652   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       6.285 -23.112   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.951 -25.422   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.618 -24.652   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.284 -25.422   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.950 -24.652   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.383 -25.422   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.717 -24.652   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.051 -25.422   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.384 -24.652   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.718 -25.422   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.952 -24.652   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.286 -25.422   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.286 -26.962   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      11.620 -27.732   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      11.620 -24.652   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      12.953 -25.422   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      12.953 -26.962   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      14.287 -24.652   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.621 -25.422   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      16.955 -24.652   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      18.288 -25.422   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      19.622 -24.652   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      20.956 -25.422   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      22.289 -24.652   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      22.450 -23.121   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      21.306 -22.090   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      23.957 -22.800   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      24.727 -24.134   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      26.258 -24.295   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      23.696 -25.279   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      24.016 -26.785   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      22.872 -27.815   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      23.192 -29.322   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      22.048 -30.352   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      24.657 -29.798   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      24.977 -31.304   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      26.441 -31.780   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      26.762 -33.286   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      28.226 -33.762   0.000  0.00  0.00           C+0
CONECT    1    2   13                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11                                                            
CONECT   13    1   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   32                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   26   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   82    0
END

COMPND    HMDB0294593
HETATM    1  C1  UNL     1     -12.848   2.795   2.492  1.00  0.00           C  
HETATM    2  C2  UNL     1     -13.569   1.666   1.858  1.00  0.00           C  
HETATM    3  C3  UNL     1     -13.097   1.248   0.508  1.00  0.00           C  
HETATM    4  C4  UNL     1     -11.732   0.711   0.377  1.00  0.00           C  
HETATM    5  C5  UNL     1     -10.607   1.584   0.765  1.00  0.00           C  
HETATM    6  C6  UNL     1      -9.264   0.904   0.498  1.00  0.00           C  
HETATM    7  C7  UNL     1      -9.147  -0.372   1.283  1.00  0.00           C  
HETATM    8  C8  UNL     1      -7.824  -1.064   1.067  1.00  0.00           C  
HETATM    9  C9  UNL     1      -7.599  -1.435  -0.371  1.00  0.00           C  
HETATM   10  C10 UNL     1      -6.300  -2.114  -0.497  1.00  0.00           C  
HETATM   11  O1  UNL     1      -6.181  -3.326  -0.130  1.00  0.00           O  
HETATM   12  O2  UNL     1      -5.151  -1.492  -1.011  1.00  0.00           O  
HETATM   13  C11 UNL     1      -3.944  -2.240  -1.091  1.00  0.00           C  
HETATM   14  C12 UNL     1      -2.891  -1.311  -1.684  1.00  0.00           C  
HETATM   15  C13 UNL     1      -3.387  -1.002  -3.104  1.00  0.00           C  
HETATM   16  O3  UNL     1      -3.490  -2.222  -3.767  1.00  0.00           O  
HETATM   17  O4  UNL     1      -1.658  -1.936  -1.826  1.00  0.00           O  
HETATM   18  C14 UNL     1      -0.461  -1.477  -1.365  1.00  0.00           C  
HETATM   19  O5  UNL     1      -0.417  -0.381  -0.743  1.00  0.00           O  
HETATM   20  C15 UNL     1       0.766  -2.279  -1.606  1.00  0.00           C  
HETATM   21  C16 UNL     1       1.498  -1.817  -2.820  1.00  0.00           C  
HETATM   22  C17 UNL     1       1.984  -0.415  -2.800  1.00  0.00           C  
HETATM   23  C18 UNL     1       2.970  -0.083  -1.713  1.00  0.00           C  
HETATM   24  C19 UNL     1       4.218  -0.911  -1.797  1.00  0.00           C  
HETATM   25  C20 UNL     1       5.249  -0.628  -0.773  1.00  0.00           C  
HETATM   26  C21 UNL     1       4.794  -0.834   0.622  1.00  0.00           C  
HETATM   27  C22 UNL     1       4.340  -2.219   0.962  1.00  0.00           C  
HETATM   28  O6  UNL     1       5.343  -3.153   0.624  1.00  0.00           O  
HETATM   29  C23 UNL     1       4.356  -2.171   2.497  1.00  0.00           C  
HETATM   30  C24 UNL     1       5.336  -1.122   2.846  1.00  0.00           C  
HETATM   31  O7  UNL     1       5.568  -0.686   3.944  1.00  0.00           O  
HETATM   32  C25 UNL     1       5.988  -0.697   1.587  1.00  0.00           C  
HETATM   33  C26 UNL     1       6.540   0.662   1.613  1.00  0.00           C  
HETATM   34  C27 UNL     1       7.832   0.797   1.248  1.00  0.00           C  
HETATM   35  C28 UNL     1       8.520   2.127   1.230  1.00  0.00           C  
HETATM   36  O8  UNL     1       7.780   3.093   1.897  1.00  0.00           O  
HETATM   37  C29 UNL     1       9.858   1.954   1.916  1.00  0.00           C  
HETATM   38  C30 UNL     1      10.742   0.978   1.243  1.00  0.00           C  
HETATM   39  C31 UNL     1      11.194   1.248  -0.135  1.00  0.00           C  
HETATM   40  C32 UNL     1      12.091   2.421  -0.359  1.00  0.00           C  
HETATM   41  C33 UNL     1      11.519   3.742   0.018  1.00  0.00           C  
HETATM   42  H1  UNL     1     -12.205   2.512   3.352  1.00  0.00           H  
HETATM   43  H2  UNL     1     -13.585   3.586   2.881  1.00  0.00           H  
HETATM   44  H3  UNL     1     -12.266   3.358   1.738  1.00  0.00           H  
HETATM   45  H4  UNL     1     -13.557   0.744   2.520  1.00  0.00           H  
HETATM   46  H5  UNL     1     -14.660   1.969   1.789  1.00  0.00           H  
HETATM   47  H6  UNL     1     -13.243   2.152  -0.183  1.00  0.00           H  
HETATM   48  H7  UNL     1     -13.825   0.504   0.049  1.00  0.00           H  
HETATM   49  H8  UNL     1     -11.683  -0.209   1.021  1.00  0.00           H  
HETATM   50  H9  UNL     1     -11.617   0.333  -0.672  1.00  0.00           H  
HETATM   51  H10 UNL     1     -10.629   1.730   1.874  1.00  0.00           H  
HETATM   52  H11 UNL     1     -10.556   2.564   0.267  1.00  0.00           H  
HETATM   53  H12 UNL     1      -9.179   0.691  -0.605  1.00  0.00           H  
HETATM   54  H13 UNL     1      -8.484   1.626   0.759  1.00  0.00           H  
HETATM   55  H14 UNL     1      -9.259  -0.164   2.350  1.00  0.00           H  
HETATM   56  H15 UNL     1      -9.916  -1.094   0.901  1.00  0.00           H  
HETATM   57  H16 UNL     1      -7.870  -2.019   1.640  1.00  0.00           H  
HETATM   58  H17 UNL     1      -6.987  -0.473   1.494  1.00  0.00           H  
HETATM   59  H18 UNL     1      -7.678  -0.571  -1.074  1.00  0.00           H  
HETATM   60  H19 UNL     1      -8.391  -2.175  -0.643  1.00  0.00           H  
HETATM   61  H20 UNL     1      -3.670  -2.519  -0.054  1.00  0.00           H  
HETATM   62  H21 UNL     1      -4.067  -3.105  -1.754  1.00  0.00           H  
HETATM   63  H22 UNL     1      -2.775  -0.378  -1.134  1.00  0.00           H  
HETATM   64  H23 UNL     1      -2.664  -0.311  -3.616  1.00  0.00           H  
HETATM   65  H24 UNL     1      -4.345  -0.481  -2.987  1.00  0.00           H  
HETATM   66  H25 UNL     1      -2.835  -2.868  -3.415  1.00  0.00           H  
HETATM   67  H26 UNL     1       0.445  -3.326  -1.784  1.00  0.00           H  
HETATM   68  H27 UNL     1       1.379  -2.187  -0.680  1.00  0.00           H  
HETATM   69  H28 UNL     1       2.319  -2.520  -3.122  1.00  0.00           H  
HETATM   70  H29 UNL     1       0.768  -1.883  -3.678  1.00  0.00           H  
HETATM   71  H30 UNL     1       2.468  -0.221  -3.789  1.00  0.00           H  
HETATM   72  H31 UNL     1       1.113   0.272  -2.765  1.00  0.00           H  
HETATM   73  H32 UNL     1       3.272   0.976  -1.858  1.00  0.00           H  
HETATM   74  H33 UNL     1       2.451  -0.147  -0.749  1.00  0.00           H  
HETATM   75  H34 UNL     1       4.016  -2.000  -1.796  1.00  0.00           H  
HETATM   76  H35 UNL     1       4.671  -0.705  -2.808  1.00  0.00           H  
HETATM   77  H36 UNL     1       5.543   0.445  -0.873  1.00  0.00           H  
HETATM   78  H37 UNL     1       6.113  -1.302  -0.956  1.00  0.00           H  
HETATM   79  H38 UNL     1       4.043  -0.117   0.977  1.00  0.00           H  
HETATM   80  H39 UNL     1       3.376  -2.522   0.568  1.00  0.00           H  
HETATM   81  H40 UNL     1       5.390  -3.895   1.269  1.00  0.00           H  
HETATM   82  H41 UNL     1       3.347  -1.976   2.900  1.00  0.00           H  
HETATM   83  H42 UNL     1       4.710  -3.123   2.932  1.00  0.00           H  
HETATM   84  H43 UNL     1       6.711  -1.461   1.242  1.00  0.00           H  
HETATM   85  H44 UNL     1       5.988   1.525   1.898  1.00  0.00           H  
HETATM   86  H45 UNL     1       8.406  -0.065   0.951  1.00  0.00           H  
HETATM   87  H46 UNL     1       8.704   2.367   0.164  1.00  0.00           H  
HETATM   88  H47 UNL     1       7.801   3.944   1.363  1.00  0.00           H  
HETATM   89  H48 UNL     1      10.383   2.879   2.140  1.00  0.00           H  
HETATM   90  H49 UNL     1       9.596   1.503   2.926  1.00  0.00           H  
HETATM   91  H50 UNL     1      11.690   0.919   1.884  1.00  0.00           H  
HETATM   92  H51 UNL     1      10.370  -0.075   1.286  1.00  0.00           H  
HETATM   93  H52 UNL     1      11.813   0.341  -0.445  1.00  0.00           H  
HETATM   94  H53 UNL     1      10.356   1.220  -0.886  1.00  0.00           H  
HETATM   95  H54 UNL     1      13.054   2.260   0.204  1.00  0.00           H  
HETATM   96  H55 UNL     1      12.411   2.432  -1.455  1.00  0.00           H  
HETATM   97  H56 UNL     1      11.920   4.502  -0.743  1.00  0.00           H  
HETATM   98  H57 UNL     1      11.956   4.140   0.975  1.00  0.00           H  
HETATM   99  H58 UNL     1      10.443   3.853  -0.030  1.00  0.00           H  
CONECT    1    2   42   43   44
CONECT    2    3   45   46
CONECT    3    4   47   48
CONECT    4    5   49   50
CONECT    5    6   51   52
CONECT    6    7   53   54
CONECT    7    8   55   56
CONECT    8    9   57   58
CONECT    9   10   59   60
CONECT   10   11   11   12
CONECT   12   13
CONECT   13   14   61   62
CONECT   14   15   17   63
CONECT   15   16   64   65
CONECT   16   66
CONECT   17   18
CONECT   18   19   19   20
CONECT   20   21   67   68
CONECT   21   22   69   70
CONECT   22   23   71   72
CONECT   23   24   73   74
CONECT   24   25   75   76
CONECT   25   26   77   78
CONECT   26   27   32   79
CONECT   27   28   29   80
CONECT   28   81
CONECT   29   30   82   83
CONECT   30   31   31   32
CONECT   32   33   84
CONECT   33   34   34   85
CONECT   34   35   86
CONECT   35   36   37   87
CONECT   36   88
CONECT   37   38   89   90
CONECT   38   39   91   92
CONECT   39   40   93   94
CONECT   40   41   95   96
CONECT   41   97   98   99
END

HMDB0294593
     RDKit          3D
DG(10:0/PGD1/0:0)
 99 99  0  0  0  0  0  0  0  0999 V2000
  -12.8483    2.7948    2.4919 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5693    1.6658    1.8578 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0967    1.2476    0.5077 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7319    0.7106    0.3769 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6068    1.5839    0.7647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2639    0.9036    0.4977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1470   -0.3719    1.2829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8241   -1.0639    1.0674 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5988   -1.4349   -0.3715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3004   -2.1141   -0.4967 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1812   -3.3255   -0.1304 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1507   -1.4916   -1.0107 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9444   -2.2400   -1.0908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8907   -1.3106   -1.6843 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3873   -1.0019   -3.1037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4899   -2.2224   -3.7668 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6583   -1.9357   -1.8264 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4613   -1.4772   -1.3653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4173   -0.3812   -0.7433 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7664   -2.2789   -1.6057 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4979   -1.8165   -2.8199 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9843   -0.4149   -2.8004 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9696   -0.0833   -1.7133 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2178   -0.9113   -1.7968 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2490   -0.6277   -0.7734 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7943   -0.8341    0.6216 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3402   -2.2187    0.9625 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3435   -3.1533    0.6242 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3563   -2.1705    2.4974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3356   -1.1219    2.8464 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5682   -0.6860    3.9437 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9882   -0.6967    1.5866 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5399    0.6622    1.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8316    0.7969    1.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5201    2.1274    1.2300 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7805    3.0934    1.8975 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8582    1.9536    1.9160 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7416    0.9780    1.2434 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1939    1.2477   -0.1351 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0913    2.4209   -0.3586 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5188    3.7416    0.0183 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2046    2.5121    3.3516 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5847    3.5861    2.8812 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2656    3.3582    1.7380 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5572    0.7438    2.5197 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6603    1.9686    1.7891 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2433    2.1517   -0.1831 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8251    0.5037    0.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6831   -0.2085    1.0213 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6168    0.3331   -0.6724 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6292    1.7301    1.8743 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5565    2.5639    0.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1790    0.6911   -0.6049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4844    1.6265    0.7587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2589   -0.1642    2.3501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9156   -1.0936    0.9007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8696   -2.0191    1.6401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9865   -0.4733    1.4940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6781   -0.5712   -1.0743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3910   -2.1749   -0.6434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6699   -2.5186   -0.0537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0672   -3.1052   -1.7541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7748   -0.3778   -1.1339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6640   -0.3113   -3.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3451   -0.4811   -2.9865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8347   -2.8682   -3.4147 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4450   -3.3257   -1.7838 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3787   -2.1867   -0.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3185   -2.5196   -3.1222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7681   -1.8831   -3.6784 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4682   -0.2207   -3.7893 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1133    0.2717   -2.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2722    0.9757   -1.8577 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4513   -0.1465   -0.7486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0162   -2.0005   -1.7961 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6713   -0.7049   -2.8076 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5431    0.4450   -0.8727 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1131   -1.3021   -0.9560 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0432   -0.1172    0.9774 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3756   -2.5216    0.5682 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3900   -3.8947    1.2689 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3471   -1.9756    2.8998 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7102   -3.1229    2.9316 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7107   -1.4608    1.2416 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9884    1.5253    1.8982 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4060   -0.0646    0.9507 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7036    2.3673    0.1638 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8011    3.9438    1.3629 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3827    2.8791    2.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5958    1.5035    2.9264 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6898    0.9186    1.8843 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3700   -0.0755    1.2864 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8133    0.3406   -0.4447 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3560    1.2203   -0.8856 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0540    2.2597    0.2043 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4115    2.4325   -1.4549 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9195    4.5018   -0.7428 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9560    4.1397    0.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4429    3.8528   -0.0304 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 32 33  1  0
 33 34  2  0
 34 35  1  0
 35 36  1  0
 35 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 40 41  1  0
 32 26  1  0
  1 42  1  0
  1 43  1  0
  1 44  1  0
  2 45  1  0
  2 46  1  0
  3 47  1  0
  3 48  1  0
  4 49  1  0
  4 50  1  0
  5 51  1  0
  5 52  1  0
  6 53  1  0
  6 54  1  0
  7 55  1  0
  7 56  1  0
  8 57  1  0
  8 58  1  0
  9 59  1  0
  9 60  1  0
 13 61  1  0
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 14 63  1  1
 15 64  1  0
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 20 67  1  0
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 37 89  1  0
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 40 96  1  0
 41 97  1  0
 41 98  1  0
 41 99  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2S)-3-Hydroxy-2-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl decanoic acid	HMDB

Chemical Formula

C₃₃H₅₈O₈

Average Molecular Weight

582.819

Monoisotopic Molecular Weight

582.413168828

IUPAC Name

(2S)-3-hydroxy-2-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl decanoate

Traditional Name

(2S)-3-hydroxy-2-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl decanoate

CAS Registry Number

Not Available

SMILES

CCCCCCCCCC(=O)OC[C@H](CO)OC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C33H58O8/c1-3-5-7-8-9-10-15-19-32(38)40-25-27(24-34)41-33(39)20-16-12-11-14-18-28-29(31(37)23-30(28)36)22-21-26(35)17-13-6-4-2/h21-22,26-30,34-36H,3-20,23-25H2,1-2H3/b22-21+/t26-,27-,28+,29+,30-/m0/s1

InChI Key

CJVKFQYIFDGHGR-AKDCUWDLSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Diradylglycerol
Diacylglycerol
1,2-acyl-sn-glycerol
Fatty alcohol
Glycerolipid
Fatty acid ester
Dicarboxylic acid or derivatives
Cyclopentanol
Cyclic alcohol
Cyclic ketone
Secondary alcohol
Ketone
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Endogenous (HMDB: HMDB0294593)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	5.59	ALOGPS
logP	6.67	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	14.04	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	130.36 Å²	ChemAxon
Rotatable Bond Count	27	ChemAxon
Refractivity	161.33 m³·mol⁻¹	ChemAxon
Polarizability	70.49 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	249.473	32859911
AllCCS	[M+H-H2O]+	248.698	32859911
AllCCS	[M+Na]+	250.347	32859911
AllCCS	[M+NH4]+	250.157	32859911
AllCCS	[M-H]-	238.182	32859911
AllCCS	[M+Na-2H]-	242.202	32859911
AllCCS	[M+HCOO]-	246.749	32859911
DeepCCS	[M+H]+	238.713	30932474
DeepCCS	[M-H]-	236.888	30932474
DeepCCS	[M-2H]-	270.129	30932474
DeepCCS	[M+Na]+	244.319	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	9.33 minutes	32390414
Predicted by Siyang on May 30, 2022	21.1644 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	0.82 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	4260.4 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	224.8 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	279.4 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	182.8 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	703.3 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1059.2 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	906.2 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	175.3 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	2135.5 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	810.0 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	2357.7 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	642.3 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	581.2 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	222.1 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	310.3 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.3 seconds	40023050

Predicted Kovats Retention Indices

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
DG(10:0/PGD1/0:0),4TMS,isomer #1	CCCCCCCCCC(=O)OC[C@H](CO[Si](C)(C)C)OC(=O)CCCCCC[C@@H]1C(/C=C/[C@H](CCCCC)O[Si](C)(C)C)=C(O[Si](C)(C)C)C[C@@H]1O[Si](C)(C)C	4224.4	Semi standard non polar	33892256
DG(10:0/PGD1/0:0),4TMS,isomer #1	CCCCCCCCCC(=O)OC[C@H](CO[Si](C)(C)C)OC(=O)CCCCCC[C@@H]1C(/C=C/[C@H](CCCCC)O[Si](C)(C)C)=C(O[Si](C)(C)C)C[C@@H]1O[Si](C)(C)C	3625.8	Standard non polar	33892256
DG(10:0/PGD1/0:0),4TMS,isomer #1	CCCCCCCCCC(=O)OC[C@H](CO[Si](C)(C)C)OC(=O)CCCCCC[C@@H]1C(/C=C/[C@H](CCCCC)O[Si](C)(C)C)=C(O[Si](C)(C)C)C[C@@H]1O[Si](C)(C)C	4539.8	Standard polar	33892256
DG(10:0/PGD1/0:0),4TMS,isomer #2	CCCCCCCCCC(=O)OC[C@H](CO[Si](C)(C)C)OC(=O)CCCCCC[C@H]1[C@@H](O[Si](C)(C)C)C=C(O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C	4135.6	Semi standard non polar	33892256
DG(10:0/PGD1/0:0),4TMS,isomer #2	CCCCCCCCCC(=O)OC[C@H](CO[Si](C)(C)C)OC(=O)CCCCCC[C@H]1[C@@H](O[Si](C)(C)C)C=C(O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C	3464.7	Standard non polar	33892256
DG(10:0/PGD1/0:0),4TMS,isomer #2	CCCCCCCCCC(=O)OC[C@H](CO[Si](C)(C)C)OC(=O)CCCCCC[C@H]1[C@@H](O[Si](C)(C)C)C=C(O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C	4580.3	Standard polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(10:0/PGD1/0:0) 10V, Positive-QTOF	splash10-0udi-0000009000-cd81168591647619f070	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(10:0/PGD1/0:0) 20V, Positive-QTOF	splash10-0429-0090971000-0e65fbc3fa8f15519209	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(10:0/PGD1/0:0) 40V, Positive-QTOF	splash10-0ior-0090936000-63dda10d798503e01a35	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(10:0/PGD1/0:0) 10V, Positive-QTOF	splash10-0a4i-0000009000-d0db935ca04486c5777d	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(10:0/PGD1/0:0) 20V, Positive-QTOF	splash10-0a4i-0000009000-d0db935ca04486c5777d	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(10:0/PGD1/0:0) 40V, Positive-QTOF	splash10-0uf0-0191901000-9fe1be2917b359374fc1	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

157002700

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Diacylglycerol kinase theta

General function:: Involved in diacylglycerol kinase activity
Specific function:: Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:: DGKQ
Uniprot ID:: P52824
Molecular weight:: 101154.0

Enzyme Details

2. Pancreatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Not Available
Gene Name:: PNLIP
Uniprot ID:: P16233
Molecular weight:: 51156.48

Enzyme Details

3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB1
Uniprot ID:: Q9NQ66
Molecular weight:: 138565.805

Enzyme Details

4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:: PLCB4
Uniprot ID:: Q15147
Molecular weight:: 136105.065

Enzyme Details

5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB2
Uniprot ID:: Q00722
Molecular weight:: 134023.21

Enzyme Details

6. Diacylglycerol kinase gamma

General function:: Involved in diacylglycerol kinase activity
Specific function:: Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:: DGKG
Uniprot ID:: P49619
Molecular weight:: 89095.3

Enzyme Details

7. Hepatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:: LIPC
Uniprot ID:: P11150
Molecular weight:: 55914.1

Enzyme Details

8. Lysosomal acid lipase/cholesteryl ester hydrolase

General function:: Involved in lipid metabolic process
Specific function:: Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:: LIPA
Uniprot ID:: P38571
Molecular weight:: 45418.71

Enzyme Details

9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB3
Uniprot ID:: Q01970
Molecular weight:: 138797.725

Enzyme Details

10. Inactive pancreatic lipase-related protein 1

General function:: Involved in catalytic activity
Specific function:: May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:: PNLIPRP1
Uniprot ID:: P54315
Molecular weight:: Not Available

Transporters

Enzyme Details

1. Long-chain fatty acid transport protein 1

General function:: Lipid transport and metabolism
Specific function:: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:: SLC27A1
Uniprot ID:: Q6PCB7
Molecular weight:: 71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Showing metabocard for DG(10:0/PGD1/0:0) (HMDB0294593)

MOL for HMDB0294593 (DG(10:0/PGD1/0:0))

3D MOL for HMDB0294593 (DG(10:0/PGD1/0:0))

3D SDF for HMDB0294593 (DG(10:0/PGD1/0:0))

3D-SDF for HMDB0294593 (DG(10:0/PGD1/0:0))

PDB for HMDB0294593 (DG(10:0/PGD1/0:0))

3D PDB for HMDB0294593 (DG(10:0/PGD1/0:0))

SMILES for HMDB0294593 (DG(10:0/PGD1/0:0))

INCHI for HMDB0294593 (DG(10:0/PGD1/0:0))

Structure for HMDB0294593 (DG(10:0/PGD1/0:0))

3D Structure for HMDB0294593 (DG(10:0/PGD1/0:0))

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Derivatized

MS/MS Spectra

Enzymes

Transporters